Wall clock time and date at job start Tue Mar 31 2020 21:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46271 * 2 1 4 4 C 1.53043 * 109.45965 * 240.04156 * 2 1 3 5 5 C 1.53185 * 109.31380 * 178.61039 * 4 2 1 6 6 N 1.46929 * 108.77590 * 54.64014 * 5 4 2 7 7 C 1.36936 * 120.63495 * 126.41109 * 6 5 4 8 8 H 1.07998 * 119.99901 * 207.67317 * 7 6 5 9 9 C 1.38808 * 119.99799 * 27.66612 * 7 6 5 10 10 N 1.31615 * 119.99919 * 17.37347 * 9 7 6 11 11 Si 1.86803 * 119.99890 * 197.36546 * 9 7 6 12 12 H 1.48503 * 109.47142 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46750 * 120.00271 * 11 9 7 14 14 H 1.48496 * 109.47304 * 240.00264 * 11 9 7 15 15 C 1.46929 * 118.73367 * 306.39079 * 6 5 4 16 16 C 1.53040 * 109.46236 * 119.97514 * 2 1 3 17 17 H 1.09000 * 109.52142 * 61.41658 * 16 2 1 18 18 N 1.46503 * 109.49536 * 301.33484 * 16 2 1 19 19 C 1.34774 * 119.99900 * 155.16544 * 18 16 2 20 20 O 1.21280 * 120.00057 * 359.97438 * 19 18 16 21 21 C 1.50701 * 120.00065 * 180.02562 * 19 18 16 22 22 N 1.46498 * 109.47108 * 179.97438 * 21 19 18 23 23 C 1.47310 * 126.69114 * 89.99610 * 22 21 19 24 24 C 1.51583 * 103.59655 * 179.97438 * 23 22 21 25 25 O 1.21235 * 127.16235 * 179.97438 * 24 23 22 26 26 N 1.34770 * 105.68144 * 0.02562 * 24 23 22 27 27 C 1.46506 * 124.17939 * 179.97438 * 26 24 23 28 28 C 1.33791 * 111.64747 * 359.76814 * 26 24 23 29 29 O 1.21537 * 123.77639 * 180.24709 * 28 26 24 30 30 H 1.08999 * 109.46854 * 300.02288 * 1 2 3 31 31 H 1.08993 * 109.47869 * 60.02650 * 1 2 3 32 32 H 1.09007 * 109.47145 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.49504 * 58.65884 * 4 2 1 34 34 H 1.08995 * 109.49650 * 298.56887 * 4 2 1 35 35 H 1.09001 * 109.59288 * 294.84864 * 5 4 2 36 36 H 1.09006 * 109.58566 * 174.41925 * 5 4 2 37 37 H 0.97007 * 119.99487 * 179.97438 * 10 9 7 38 38 H 1.09000 * 109.58514 * 173.39639 * 15 6 5 39 39 H 1.09003 * 109.58578 * 293.81373 * 15 6 5 40 40 H 0.96996 * 120.00023 * 335.16364 * 18 16 2 41 41 H 1.08999 * 109.46913 * 299.99374 * 21 19 18 42 42 H 1.09002 * 109.46845 * 59.99862 * 21 19 18 43 43 H 1.08998 * 110.60088 * 298.49144 * 23 22 21 44 44 H 1.09010 * 110.59570 * 61.28253 * 23 22 21 45 45 H 1.09007 * 109.46919 * 0.03005 * 27 26 24 46 46 H 1.08995 * 109.47148 * 120.02336 * 27 26 24 47 47 H 1.08991 * 109.47309 * 240.03090 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7206 -1.2502 5 6 3.5713 -0.6883 -1.2645 6 7 4.0679 -1.2488 -0.0003 7 6 4.9764 -2.2734 -0.0005 8 1 5.0096 -2.9658 0.8277 9 6 5.8546 -2.4220 -1.0651 10 7 6.0604 -1.4199 -1.8932 11 14 6.7446 -4.0442 -1.3223 12 1 6.3422 -5.0030 -0.2621 13 1 6.3874 -4.5991 -2.6526 14 1 8.2111 -3.8200 -1.2569 15 6 3.5714 -0.6887 1.2640 16 6 2.0399 -0.7209 1.2500 17 1 1.6978 -1.7558 1.2386 18 7 1.5256 -0.0490 2.4459 19 6 1.4003 -0.7318 3.6011 20 8 1.7128 -1.9026 3.6505 21 6 0.8708 -0.0408 4.8312 22 7 0.8306 -0.9907 5.9458 23 6 1.9066 -1.2547 6.9166 24 6 1.3143 -2.3127 7.8262 25 8 1.8457 -2.8392 8.7802 26 7 0.0744 -2.5473 7.3530 27 6 -0.8615 -3.5104 7.9385 28 6 -0.1980 -1.7888 6.2850 29 8 -1.2554 -1.8190 5.6867 30 1 -0.3633 0.5142 0.8898 31 1 -0.3634 0.5134 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 1.6571 -0.2204 -2.1399 34 1 1.6977 -1.7554 -1.2386 35 1 3.9142 0.3412 -1.3674 36 1 3.9415 -1.2843 -2.0987 37 1 6.6744 -1.5238 -2.6370 38 1 3.9417 -1.2848 2.0981 39 1 3.9144 0.3407 1.3673 40 1 1.2753 0.8873 2.4064 41 1 1.5230 0.7939 5.0882 42 1 -0.1348 0.3309 4.6346 43 1 2.7938 -1.6365 6.4114 44 1 2.1456 -0.3519 7.4790 45 1 -0.3967 -3.9915 8.7992 46 1 -1.7654 -2.9912 8.2568 47 1 -1.1186 -4.2651 7.1954 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968541077.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:49 Heat of formation + Delta-G solvation = -72.477715 kcal Electronic energy + Delta-G solvation = -30326.175243 eV Core-core repulsion = 26123.841250 eV Total energy + Delta-G solvation = -4202.333993 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.36907 -41.03952 -39.78162 -39.14667 -37.27989 -36.31203 -36.05361 -34.48131 -33.03152 -31.73760 -30.30600 -28.97494 -28.15111 -27.46831 -25.85164 -24.14638 -23.40905 -22.69617 -21.82803 -21.30583 -20.77840 -18.79871 -18.70450 -18.57844 -17.77911 -17.68962 -17.16493 -16.83995 -16.69989 -16.08987 -15.81293 -15.56311 -15.38760 -15.28953 -15.17639 -15.03007 -14.96357 -14.59155 -14.30804 -14.13295 -13.71763 -13.56985 -13.54288 -13.23196 -13.14875 -13.09433 -12.76840 -12.64301 -12.29645 -12.08809 -12.01003 -11.96120 -11.66761 -11.46472 -11.41669 -11.24024 -11.15338 -10.93644 -10.60728 -10.08687 -9.98827 -8.69751 -7.92020 -5.36645 0.52666 0.95953 1.41315 1.43800 1.54539 1.65927 1.79344 1.90376 2.32855 2.50764 3.00554 3.22185 3.65333 3.67903 3.77114 3.88359 4.03100 4.13483 4.19452 4.23667 4.34889 4.38213 4.38565 4.47211 4.47818 4.55911 4.68064 4.68702 4.75781 4.81461 4.94085 4.97890 5.04068 5.12622 5.18606 5.24825 5.25951 5.46162 5.47938 5.59613 5.62345 5.77540 5.97628 6.25598 6.35713 6.63161 6.92644 7.11928 7.34999 7.82571 8.31283 9.13523 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013258 B = 0.002967 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.409929 B = 9435.352003 C =10814.834704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.082 4.082 3 H 0.087 0.913 4 C -0.125 4.125 5 C 0.172 3.828 6 N -0.608 5.608 7 C -0.266 4.266 8 H 0.051 0.949 9 C -0.042 4.042 10 N -0.927 5.927 11 Si 0.961 3.039 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.286 1.286 15 C 0.147 3.853 16 C 0.151 3.849 17 H 0.046 0.954 18 N -0.701 5.701 19 C 0.483 3.517 20 O -0.585 6.585 21 C 0.139 3.861 22 N -0.606 5.606 23 C 0.069 3.931 24 C 0.525 3.475 25 O -0.500 6.500 26 N -0.584 5.584 27 C 0.083 3.917 28 C 0.699 3.301 29 O -0.577 6.577 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.035 0.965 33 H 0.081 0.919 34 H 0.040 0.960 35 H 0.008 0.992 36 H 0.052 0.948 37 H 0.252 0.748 38 H 0.030 0.970 39 H 0.028 0.972 40 H 0.420 0.580 41 H 0.175 0.825 42 H 0.140 0.860 43 H 0.126 0.874 44 H 0.174 0.826 45 H 0.103 0.897 46 H 0.091 0.909 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.804 9.394 16.513 24.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.101 4.101 3 H 0.105 0.895 4 C -0.164 4.164 5 C 0.047 3.953 6 N -0.332 5.332 7 C -0.396 4.396 8 H 0.069 0.931 9 C -0.238 4.238 10 N -0.573 5.573 11 Si 0.789 3.211 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.213 1.213 15 C 0.020 3.980 16 C 0.044 3.956 17 H 0.064 0.936 18 N -0.354 5.354 19 C 0.269 3.731 20 O -0.464 6.464 21 C 0.015 3.985 22 N -0.342 5.342 23 C -0.056 4.056 24 C 0.315 3.685 25 O -0.372 6.372 26 N -0.329 5.329 27 C -0.057 4.057 28 C 0.401 3.599 29 O -0.453 6.453 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.100 0.900 34 H 0.059 0.941 35 H 0.026 0.974 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.049 0.951 39 H 0.046 0.954 40 H 0.258 0.742 41 H 0.192 0.808 42 H 0.158 0.842 43 H 0.144 0.856 44 H 0.191 0.809 45 H 0.122 0.878 46 H 0.110 0.890 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.804 8.296 16.568 23.717 hybrid contribution 0.818 -1.088 -0.610 1.491 sum -13.986 7.209 15.958 22.411 Atomic orbital electron populations 1.21775 0.93137 1.01320 1.03034 1.21227 0.96715 0.99573 0.92564 0.89484 1.22093 0.96810 0.99582 0.97947 1.20702 0.90531 0.95507 0.88543 1.44226 1.48144 1.39785 1.01056 1.19385 1.10401 1.03737 1.06066 0.93115 1.25659 0.98192 1.00294 0.99685 1.70161 1.38415 1.30399 1.18308 0.85310 0.77969 0.80218 0.77576 1.20109 1.21152 1.21290 1.21220 0.92715 0.95989 0.88100 1.21180 0.93756 0.95936 0.84725 0.93589 1.45796 1.65275 1.15330 1.08997 1.22005 0.77586 0.87323 0.86208 1.90755 1.51410 1.18868 1.85376 1.21501 1.07061 0.89857 0.80084 1.47133 1.14401 1.42095 1.30585 1.22766 0.92159 1.00751 0.89880 1.21231 0.80818 0.82677 0.83796 1.90807 1.65465 1.53445 1.27524 1.46381 1.17893 1.39208 1.29461 1.21984 0.92749 0.91354 0.99649 1.15987 0.84495 0.79233 0.80145 1.90947 1.26710 1.70614 1.57061 0.90744 0.91025 0.94575 0.90029 0.94146 0.97376 0.92970 0.93866 0.95130 0.95428 0.74237 0.80809 0.84232 0.85625 0.80932 0.87804 0.89017 0.90810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.02 71.98 0.65 -2.29 16 2 C -0.08 -2.30 2.27 -10.77 -0.02 -2.33 16 3 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 4 C -0.12 -4.45 5.36 30.67 0.16 -4.29 16 5 C 0.17 8.13 5.31 86.36 0.46 8.58 16 6 N -0.61 -31.14 3.00 -699.09 -2.09 -33.23 16 7 C -0.27 -15.32 9.59 84.03 0.81 -14.52 16 8 H 0.05 3.01 7.89 -2.91 -0.02 2.98 16 9 C -0.04 -2.42 4.91 84.86 0.42 -2.00 16 10 N -0.93 -54.67 11.19 21.65 0.24 -54.43 16 11 Si 0.96 46.26 29.59 68.60 2.03 48.29 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 13 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 14 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 15 C 0.15 6.15 6.09 86.36 0.53 6.68 16 16 C 0.15 4.99 2.06 45.07 0.09 5.09 16 17 H 0.05 1.92 7.58 -2.39 -0.02 1.90 16 18 N -0.70 -15.60 4.37 -442.17 -1.93 -17.54 16 19 C 0.48 11.84 7.86 87.66 0.69 12.53 16 20 O -0.58 -21.75 16.09 -3.03 -0.05 -21.80 16 21 C 0.14 1.77 6.63 85.63 0.57 2.34 16 22 N -0.61 -10.70 2.51 -846.23 -2.12 -12.82 16 23 C 0.07 0.92 7.66 85.76 0.66 1.58 16 24 C 0.53 10.30 8.32 87.94 0.73 11.03 16 25 O -0.50 -12.26 17.51 -2.89 -0.05 -12.31 16 26 N -0.58 -12.20 3.01 -796.64 -2.39 -14.59 16 27 C 0.08 1.35 10.76 127.77 1.37 2.72 16 28 C 0.70 16.75 8.31 179.44 1.49 18.24 16 29 O -0.58 -17.68 17.34 -3.83 -0.07 -17.74 16 30 H 0.07 1.25 7.35 -2.39 -0.02 1.23 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.05 2.83 6.04 -2.38 -0.01 2.82 16 37 H 0.25 14.28 8.31 -92.70 -0.77 13.51 16 38 H 0.03 1.41 7.93 -2.39 -0.02 1.39 16 39 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.42 5.40 8.30 -92.71 -0.77 4.63 16 41 H 0.17 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.14 1.33 8.02 -2.39 -0.02 1.31 16 43 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.17 0.69 8.14 -2.38 -0.02 0.67 16 45 H 0.10 1.44 7.64 -2.38 -0.02 1.42 16 46 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -86.86 386.84 2.38 -84.48 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 0.22 Total: 8.32 kcal Atomic # 6 Polarization: 34.77 SS G_CDS: 8.60 Total: 43.37 kcal Atomic # 7 Polarization: -124.31 SS G_CDS: -8.30 Total: -132.61 kcal Atomic # 8 Polarization: -51.68 SS G_CDS: -0.17 Total: -51.85 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -86.86 2.38 -84.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968541077.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.002 kcal (2) G-P(sol) polarization free energy of solvation -86.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds