Wall clock time and date at job start Tue Mar 31 2020 21:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46271 * 2 1 4 4 C 1.53043 * 109.45965 * 240.04156 * 2 1 3 5 5 C 1.53185 * 109.31380 * 178.61039 * 4 2 1 6 6 N 1.46929 * 108.77590 * 54.64014 * 5 4 2 7 7 C 1.36936 * 120.63495 * 126.41109 * 6 5 4 8 8 H 1.07998 * 119.99901 * 207.67317 * 7 6 5 9 9 C 1.38808 * 119.99799 * 27.66612 * 7 6 5 10 10 N 1.31615 * 119.99919 * 17.37347 * 9 7 6 11 11 Si 1.86803 * 119.99890 * 197.36546 * 9 7 6 12 12 H 1.48503 * 109.47142 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46750 * 120.00271 * 11 9 7 14 14 H 1.48496 * 109.47304 * 240.00264 * 11 9 7 15 15 C 1.46929 * 118.73367 * 306.39079 * 6 5 4 16 16 C 1.53040 * 109.46236 * 119.97514 * 2 1 3 17 17 H 1.08999 * 109.49903 * 61.43494 * 16 2 1 18 18 N 1.46497 * 109.52265 * 301.35197 * 16 2 1 19 19 C 1.34779 * 120.00312 * 155.14759 * 18 16 2 20 20 O 1.21282 * 119.99697 * 359.97438 * 19 18 16 21 21 C 1.50696 * 120.00390 * 180.02562 * 19 18 16 22 22 N 1.46495 * 109.47217 * 179.97438 * 21 19 18 23 23 C 1.34770 * 124.18051 * 269.70019 * 22 21 19 24 24 O 1.21229 * 127.14980 * 359.97438 * 23 22 21 25 25 C 1.51580 * 105.68702 * 179.97438 * 23 22 21 26 26 N 1.47313 * 103.59368 * 0.31933 * 25 23 22 27 27 C 1.46499 * 126.69219 * 179.76734 * 26 25 23 28 28 C 1.33792 * 124.17701 * 89.99768 * 22 21 19 29 29 O 1.21543 * 123.77102 * 359.96390 * 28 22 21 30 30 H 1.08999 * 109.46854 * 300.02288 * 1 2 3 31 31 H 1.08993 * 109.47869 * 60.02650 * 1 2 3 32 32 H 1.09007 * 109.47145 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.49504 * 58.65884 * 4 2 1 34 34 H 1.08995 * 109.49650 * 298.56887 * 4 2 1 35 35 H 1.09001 * 109.59288 * 294.84864 * 5 4 2 36 36 H 1.09006 * 109.58566 * 174.41925 * 5 4 2 37 37 H 0.97007 * 119.99487 * 179.97438 * 10 9 7 38 38 H 1.09000 * 109.58514 * 173.39639 * 15 6 5 39 39 H 1.09003 * 109.58578 * 293.81373 * 15 6 5 40 40 H 0.97002 * 120.00038 * 335.14274 * 18 16 2 41 41 H 1.09005 * 109.46868 * 299.99761 * 21 19 18 42 42 H 1.08999 * 109.47145 * 59.99509 * 21 19 18 43 43 H 1.08996 * 110.76750 * 241.71219 * 25 23 22 44 44 H 1.08998 * 110.43459 * 118.76487 * 25 23 22 45 45 H 1.09001 * 109.47275 * 180.02562 * 27 26 25 46 46 H 1.08997 * 109.46957 * 300.02232 * 27 26 25 47 47 H 1.09004 * 109.46828 * 60.02196 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7206 -1.2502 5 6 3.5713 -0.6883 -1.2645 6 7 4.0679 -1.2488 -0.0003 7 6 4.9764 -2.2734 -0.0005 8 1 5.0096 -2.9658 0.8277 9 6 5.8546 -2.4220 -1.0651 10 7 6.0604 -1.4199 -1.8932 11 14 6.7446 -4.0442 -1.3223 12 1 6.3422 -5.0030 -0.2621 13 1 6.3874 -4.5991 -2.6526 14 1 8.2111 -3.8200 -1.2569 15 6 3.5714 -0.6887 1.2640 16 6 2.0399 -0.7209 1.2500 17 1 1.6979 -1.7558 1.2380 18 7 1.5256 -0.0497 2.4463 19 6 1.4003 -0.7332 3.6012 20 8 1.7128 -1.9040 3.6498 21 6 0.8708 -0.0429 4.8316 22 7 0.8305 -0.9934 5.9456 23 6 -0.2308 -1.7699 6.2403 24 8 -1.2922 -1.8117 5.6560 25 6 0.1787 -2.5801 7.4543 26 7 1.5492 -2.1175 7.7331 27 6 2.4240 -2.5743 8.8158 28 6 1.8408 -1.1937 6.7995 29 8 2.9028 -0.6057 6.7396 30 1 -0.3633 0.5142 0.8898 31 1 -0.3634 0.5134 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 1.6571 -0.2204 -2.1399 34 1 1.6977 -1.7554 -1.2386 35 1 3.9142 0.3412 -1.3674 36 1 3.9415 -1.2843 -2.0987 37 1 6.6744 -1.5238 -2.6370 38 1 3.9417 -1.2848 2.0981 39 1 3.9144 0.3407 1.3673 40 1 1.2754 0.8867 2.4073 41 1 1.5230 0.7917 5.0890 42 1 -0.1348 0.3290 4.6352 43 1 0.1725 -3.6462 7.2274 44 1 -0.4783 -2.3624 8.2963 45 1 3.3759 -2.0460 8.7612 46 1 1.9502 -2.3710 9.7760 47 1 2.5969 -3.6459 8.7155 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968628200.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:09 Heat of formation + Delta-G solvation = -44.103700 kcal Electronic energy + Delta-G solvation = -30570.698298 eV Core-core repulsion = 26369.594695 eV Total energy + Delta-G solvation = -4201.103604 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.56723 -39.71885 -38.81287 -37.69750 -36.37034 -35.33515 -34.47176 -33.04379 -31.10885 -30.65450 -29.09007 -27.81116 -27.08245 -26.36160 -24.05165 -22.75964 -22.44941 -21.13066 -20.79768 -20.12037 -19.36588 -17.87852 -17.74892 -16.96675 -16.77505 -16.57885 -15.97150 -15.42489 -15.16146 -14.94350 -14.68684 -14.59823 -14.29124 -14.22627 -13.78373 -13.65550 -13.49596 -13.37417 -13.14350 -12.91611 -12.71134 -12.47479 -12.35729 -12.00327 -11.63222 -11.48508 -11.16815 -11.01976 -10.79260 -10.66593 -10.56022 -10.47396 -10.24446 -10.12499 -9.87711 -9.80545 -9.62342 -9.42558 -9.26800 -8.82228 -8.38028 -6.64670 -5.75580 -3.17257 1.41419 1.72507 2.60261 2.71869 2.78431 3.37915 3.41175 3.48883 3.53373 3.74617 4.35750 4.53674 4.63816 4.72469 4.79744 4.82736 4.93938 5.06132 5.11790 5.20442 5.29910 5.33399 5.40328 5.49254 5.56400 5.62526 5.90814 5.97208 6.07472 6.09881 6.18307 6.23996 6.30736 6.56070 6.64232 6.68079 6.74955 6.83562 6.85370 7.01545 7.09600 7.37770 7.64995 7.67034 7.85369 7.86656 8.34069 8.49196 9.25349 9.87522 10.43043 11.33217 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012706 B = 0.003221 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.167886 B = 8690.770507 C =10135.695214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.068 0.932 4 C -0.133 4.133 5 C 0.167 3.833 6 N -0.588 5.588 7 C -0.249 4.249 8 H 0.066 0.934 9 C 0.002 3.998 10 N -0.904 5.904 11 Si 0.902 3.098 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.290 1.290 15 C 0.142 3.858 16 C 0.134 3.866 17 H 0.086 0.914 18 N -0.715 5.715 19 C 0.498 3.502 20 O -0.526 6.526 21 C 0.100 3.900 22 N -0.560 5.560 23 C 0.528 3.472 24 O -0.469 6.469 25 C 0.067 3.933 26 N -0.630 5.630 27 C 0.119 3.881 28 C 0.705 3.295 29 O -0.535 6.535 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.019 0.981 36 H 0.090 0.910 37 H 0.253 0.747 38 H 0.057 0.943 39 H 0.018 0.982 40 H 0.396 0.604 41 H 0.126 0.874 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.122 0.878 45 H 0.091 0.909 46 H 0.067 0.933 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.305 3.620 18.476 24.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.086 0.914 4 C -0.173 4.173 5 C 0.041 3.959 6 N -0.310 5.310 7 C -0.378 4.378 8 H 0.084 0.916 9 C -0.196 4.196 10 N -0.549 5.549 11 Si 0.731 3.269 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.217 1.217 15 C 0.014 3.986 16 C 0.029 3.971 17 H 0.104 0.896 18 N -0.366 5.366 19 C 0.281 3.719 20 O -0.402 6.402 21 C -0.026 4.026 22 N -0.305 5.305 23 C 0.315 3.685 24 O -0.338 6.338 25 C -0.059 4.059 26 N -0.370 5.370 27 C -0.021 4.021 28 C 0.407 3.593 29 O -0.408 6.408 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.037 0.963 36 H 0.108 0.892 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.036 0.964 40 H 0.230 0.770 41 H 0.144 0.856 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.110 0.890 46 H 0.086 0.914 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.847 3.040 18.078 23.590 hybrid contribution 0.376 -0.335 -0.284 0.578 sum -14.471 2.705 17.794 23.094 Atomic orbital electron populations 1.21852 0.95951 1.01588 1.00731 1.21308 0.94573 0.99690 0.95410 0.91390 1.22249 1.00676 0.99551 0.94842 1.20852 0.87310 0.97323 0.90374 1.44010 1.48067 1.39824 0.99122 1.19265 1.09653 1.02775 1.06139 0.91584 1.25006 0.97215 0.97523 0.99865 1.70051 1.37831 1.28958 1.18016 0.86224 0.79107 0.83761 0.77763 1.20203 1.21535 1.21718 1.21186 0.90010 0.96705 0.90682 1.21791 0.96755 0.96908 0.81668 0.89626 1.46008 1.65958 1.14290 1.10327 1.20583 0.78910 0.87726 0.84663 1.90756 1.49023 1.16087 1.84287 1.21485 1.05362 0.91612 0.84117 1.45818 1.16260 1.39906 1.28534 1.20842 0.83169 0.79360 0.85094 1.90821 1.23082 1.64649 1.55267 1.22455 0.84564 1.01552 0.97318 1.47394 1.15960 1.42083 1.31560 1.21547 0.93868 1.00320 0.86400 1.15768 0.83284 0.80766 0.79484 1.91008 1.23049 1.52330 1.74393 0.93392 0.92931 0.92953 0.92673 0.92445 0.96307 0.89223 0.93742 0.92433 0.96415 0.77042 0.85603 0.85910 0.85854 0.86035 0.89048 0.91409 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.02 37.16 0.34 -1.54 16 2 C -0.09 -1.45 2.27 -90.58 -0.21 -1.66 16 3 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 4 C -0.13 -2.51 5.36 -26.61 -0.14 -2.65 16 5 C 0.17 3.99 5.31 -3.71 -0.02 3.97 16 6 N -0.59 -15.25 3.00 -172.32 -0.52 -15.76 16 7 C -0.25 -7.16 9.59 -15.06 -0.14 -7.31 16 8 H 0.07 1.93 7.89 -52.49 -0.41 1.52 16 9 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 10 N -0.90 -26.63 11.19 55.49 0.62 -26.01 16 11 Si 0.90 22.46 29.59 -169.99 -5.03 17.43 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 15 C 0.14 3.19 6.09 -3.71 -0.02 3.16 16 16 C 0.13 2.43 2.06 -67.81 -0.14 2.29 16 17 H 0.09 1.82 7.58 -51.93 -0.39 1.42 16 18 N -0.71 -10.17 4.37 -53.69 -0.23 -10.40 16 19 C 0.50 7.74 7.86 -10.99 -0.09 7.65 16 20 O -0.53 -10.74 16.09 5.56 0.09 -10.65 16 21 C 0.10 1.11 6.18 -5.20 -0.03 1.08 16 22 N -0.56 -6.87 2.09 -122.03 -0.26 -7.12 16 23 C 0.53 5.85 8.31 -10.56 -0.09 5.77 16 24 O -0.47 -6.31 17.75 5.60 0.10 -6.21 16 25 C 0.07 0.47 7.66 -4.32 -0.03 0.44 16 26 N -0.63 -5.81 3.42 -187.95 -0.64 -6.45 16 27 C 0.12 0.72 11.33 59.85 0.68 1.40 16 28 C 0.70 9.27 8.31 -88.02 -0.73 8.54 16 29 O -0.54 -8.89 16.92 5.33 0.09 -8.80 16 30 H 0.05 0.54 7.36 -51.93 -0.38 0.15 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.09 2.40 6.04 -51.93 -0.31 2.09 16 37 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.06 1.42 7.93 -51.93 -0.41 1.00 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.40 4.14 8.30 -40.82 -0.34 3.80 16 41 H 0.13 1.19 7.86 -51.93 -0.41 0.78 16 42 H 0.12 1.01 8.00 -51.93 -0.42 0.59 16 43 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.09 0.68 7.67 -51.93 -0.40 0.28 16 46 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 47 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 386.51 15.07 5.82 5.82 Total: -1.00 -38.30 386.51 -7.93 -46.23 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -7.26 Total: 0.81 kcal Atomic # 6 Polarization: 21.83 SS G_CDS: -0.72 Total: 21.12 kcal Atomic # 7 Polarization: -64.72 SS G_CDS: -1.03 Total: -65.75 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: 0.28 Total: -25.66 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.03 Total: 17.43 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -38.30 -7.93 -46.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968628200.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.129 kcal (2) G-P(sol) polarization free energy of solvation -38.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds