Wall clock time and date at job start Tue Mar 31 2020 21:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.44553 * 2 1 4 4 C 1.53045 * 109.45806 * 119.96299 * 2 1 3 5 5 C 1.53195 * 109.30759 * 181.38469 * 4 2 1 6 6 N 1.46924 * 108.77977 * 305.36596 * 5 4 2 7 7 C 1.36934 * 120.63255 * 233.63295 * 6 5 4 8 8 H 1.08001 * 120.00143 * 27.66763 * 7 6 5 9 9 C 1.38808 * 120.00056 * 207.66352 * 7 6 5 10 10 N 1.31617 * 120.00002 * 17.36111 * 9 7 6 11 11 Si 1.86801 * 120.00070 * 197.35950 * 9 7 6 12 12 H 1.48500 * 109.47144 * 60.00268 * 11 9 7 13 13 H 1.48504 * 109.47101 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47002 * 300.00244 * 11 9 7 15 15 C 1.46931 * 118.73651 * 53.60794 * 6 5 4 16 16 C 1.53038 * 109.46057 * 240.03001 * 2 1 3 17 17 H 1.08996 * 109.53064 * 298.58744 * 16 2 1 18 18 N 1.46505 * 109.49327 * 58.66580 * 16 2 1 19 19 C 1.34784 * 119.99703 * 204.83819 * 18 16 2 20 20 O 1.21285 * 120.00008 * 359.97438 * 19 18 16 21 21 C 1.50696 * 119.99929 * 180.02562 * 19 18 16 22 22 N 1.46498 * 109.47207 * 179.97438 * 21 19 18 23 23 C 1.34776 * 124.17756 * 90.02111 * 22 21 19 24 24 O 1.21231 * 127.15381 * 359.97438 * 23 22 21 25 25 C 1.51579 * 105.68448 * 179.97438 * 23 22 21 26 26 N 1.47309 * 103.73052 * 359.91946 * 25 23 22 27 27 C 1.46506 * 126.68868 * 180.02562 * 26 25 23 28 28 C 1.33790 * 124.17997 * 269.98248 * 22 21 19 29 29 O 1.21537 * 123.77014 * 0.02838 * 28 22 21 30 30 H 1.08998 * 109.46806 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47245 * 299.96658 * 1 2 3 32 32 H 1.08996 * 109.47237 * 59.96849 * 1 2 3 33 33 H 1.09005 * 109.49652 * 61.44187 * 4 2 1 34 34 H 1.08994 * 109.49789 * 301.34223 * 4 2 1 35 35 H 1.08999 * 109.58229 * 185.57978 * 5 4 2 36 36 H 1.08998 * 109.70303 * 65.22934 * 5 4 2 37 37 H 0.97000 * 120.00230 * 179.97438 * 10 9 7 38 38 H 1.08999 * 109.58538 * 186.60415 * 15 6 5 39 39 H 1.08995 * 109.69862 * 66.25020 * 15 6 5 40 40 H 0.97001 * 120.00270 * 24.83378 * 18 16 2 41 41 H 1.08995 * 109.47352 * 59.99432 * 21 19 18 42 42 H 1.09007 * 109.46841 * 299.99417 * 21 19 18 43 43 H 1.08994 * 110.59709 * 118.52812 * 25 23 22 44 44 H 1.09008 * 110.59413 * 241.31694 * 25 23 22 45 45 H 1.08998 * 109.47067 * 90.00386 * 27 26 25 46 46 H 1.09001 * 109.46952 * 210.00140 * 27 26 25 47 47 H 1.08997 * 109.46959 * 330.00493 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7207 1.2502 5 6 3.5714 -0.6885 1.2643 6 7 4.0679 -1.2488 0.0001 7 6 4.9758 -2.2739 0.0001 8 1 5.0086 -2.9662 0.8283 9 6 5.8539 -2.4233 -1.0645 10 7 6.0602 -1.4216 -1.8930 11 14 6.7429 -4.0460 -1.3213 12 1 5.7474 -5.1294 -1.5227 13 1 7.6170 -3.9477 -2.5178 14 1 7.5715 -4.3509 -0.1272 15 6 3.5714 -0.6886 -1.2642 16 6 2.0399 -0.7208 -1.2500 17 1 1.6978 -1.7557 -1.2389 18 7 1.5256 -0.0487 -2.4459 19 6 1.4002 -0.7315 -3.6012 20 8 1.7135 -1.9021 -3.6509 21 6 0.8717 -0.0400 -4.8315 22 7 0.8323 -0.9896 -5.9464 23 6 -0.2270 -1.7696 -6.2394 24 8 -1.2866 -1.8164 -5.6521 25 6 0.1820 -2.5761 -7.4559 26 7 1.5523 -2.1143 -7.7370 27 6 2.4256 -2.5729 -8.8202 28 6 1.8430 -1.1890 -6.7999 29 8 2.9048 -0.6008 -6.7390 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5133 0.8903 32 1 -0.3633 0.5143 -0.8897 33 1 1.6979 -1.7557 1.2384 34 1 1.6572 -0.2207 2.1398 35 1 3.9417 -1.2844 2.0984 36 1 3.9164 0.3402 1.3686 37 1 6.6742 -1.5259 -2.6367 38 1 3.9417 -1.2845 -2.0984 39 1 3.9143 0.3407 -1.3698 40 1 1.2753 0.8876 -2.4062 41 1 1.5245 0.7942 -5.0881 42 1 -0.1338 0.3324 -4.6353 43 1 0.1755 -3.6422 -7.2291 44 1 -0.4758 -2.3604 -8.2979 45 1 2.2686 -1.9511 -9.7015 46 1 3.4661 -2.4989 -8.5040 47 1 2.1919 -3.6100 -9.0609 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968628202.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:17 Heat of formation + Delta-G solvation = -73.215443 kcal Electronic energy + Delta-G solvation = -31033.853702 eV Core-core repulsion = 26831.487719 eV Total energy + Delta-G solvation = -4202.365983 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.41843 -41.02716 -39.75123 -39.21357 -37.32730 -36.29014 -36.05035 -34.75569 -32.87926 -31.67979 -30.36701 -29.07897 -28.38752 -27.18526 -25.88927 -24.07304 -23.49856 -22.71072 -21.98783 -21.36471 -20.75936 -18.93884 -18.77281 -18.65674 -17.83834 -17.58001 -17.23260 -16.87579 -16.39660 -16.16711 -15.88084 -15.64643 -15.49916 -15.30648 -15.21253 -15.08601 -14.97989 -14.60677 -14.40212 -14.12293 -13.60070 -13.49378 -13.42425 -13.30855 -13.23020 -13.07997 -12.75025 -12.61848 -12.38273 -12.22137 -12.11448 -11.95214 -11.74181 -11.65903 -11.42959 -11.38516 -11.23895 -10.67552 -10.58514 -10.14318 -9.99424 -8.73683 -7.93391 -5.39089 0.55956 0.89276 1.34979 1.41208 1.46124 1.50648 1.75617 2.00741 2.26688 2.45432 2.99190 3.22720 3.56137 3.63975 3.77189 3.83478 3.98109 4.04798 4.12775 4.15437 4.21673 4.30623 4.33283 4.44943 4.55893 4.64892 4.65172 4.71505 4.84988 4.91047 4.93546 4.96594 5.10507 5.16620 5.19018 5.25541 5.36849 5.40778 5.44659 5.50183 5.57270 5.75176 5.98254 6.25289 6.31134 6.50796 6.92855 7.07055 7.21871 7.81324 8.30005 9.10859 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010191 B = 0.004281 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.953145 B = 6538.816439 C = 8546.667681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.082 0.918 4 C -0.116 4.116 5 C 0.135 3.865 6 N -0.610 5.610 7 C -0.267 4.267 8 H 0.069 0.931 9 C -0.050 4.050 10 N -0.930 5.930 11 Si 0.960 3.040 12 H -0.286 1.286 13 H -0.295 1.295 14 H -0.263 1.263 15 C 0.179 3.821 16 C 0.143 3.857 17 H 0.045 0.955 18 N -0.699 5.699 19 C 0.489 3.511 20 O -0.582 6.582 21 C 0.104 3.896 22 N -0.567 5.567 23 C 0.521 3.479 24 O -0.496 6.496 25 C 0.075 3.925 26 N -0.624 5.624 27 C 0.115 3.885 28 C 0.689 3.311 29 O -0.584 6.584 30 H 0.039 0.961 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.098 0.902 35 H 0.055 0.945 36 H 0.023 0.977 37 H 0.246 0.754 38 H 0.038 0.962 39 H -0.001 1.001 40 H 0.417 0.583 41 H 0.139 0.861 42 H 0.162 0.838 43 H 0.144 0.856 44 H 0.171 0.829 45 H 0.085 0.915 46 H 0.056 0.944 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.885 3.883 -11.290 21.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.103 4.103 3 H 0.101 0.899 4 C -0.155 4.155 5 C 0.011 3.989 6 N -0.333 5.333 7 C -0.397 4.397 8 H 0.087 0.913 9 C -0.246 4.246 10 N -0.575 5.575 11 Si 0.788 3.212 12 H -0.212 1.212 13 H -0.221 1.221 14 H -0.188 1.188 15 C 0.052 3.948 16 C 0.036 3.964 17 H 0.064 0.936 18 N -0.352 5.352 19 C 0.275 3.725 20 O -0.461 6.461 21 C -0.021 4.021 22 N -0.311 5.311 23 C 0.311 3.689 24 O -0.368 6.368 25 C -0.049 4.049 26 N -0.363 5.363 27 C -0.024 4.024 28 C 0.391 3.609 29 O -0.460 6.460 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.117 0.883 35 H 0.074 0.926 36 H 0.041 0.959 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.017 0.983 40 H 0.254 0.746 41 H 0.157 0.843 42 H 0.179 0.821 43 H 0.162 0.838 44 H 0.188 0.812 45 H 0.103 0.897 46 H 0.075 0.925 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -17.463 3.333 -11.158 20.990 hybrid contribution 1.234 -0.465 -0.073 1.320 sum -16.230 2.868 -11.231 19.944 Atomic orbital electron populations 1.21769 0.92790 1.01551 1.03048 1.21276 0.97046 0.99443 0.92578 0.89929 1.21973 0.95600 1.00181 0.97754 1.21185 0.93657 0.96226 0.87863 1.44236 1.48197 1.39840 1.01074 1.19472 1.09793 1.04122 1.06341 0.91333 1.25797 0.98660 1.00314 0.99843 1.70165 1.38348 1.30907 1.18090 0.85446 0.78078 0.80194 0.77495 1.21231 1.22110 1.18768 1.20763 0.89914 0.94915 0.89188 1.21484 0.94637 0.95732 0.84543 0.93641 1.45745 1.65021 1.15084 1.09308 1.21456 0.77812 0.87282 0.85952 1.90731 1.51254 1.18982 1.85172 1.21622 1.07312 0.91271 0.81902 1.45993 1.16631 1.40203 1.28318 1.21524 0.82362 0.79023 0.85958 1.90791 1.24016 1.65475 1.56492 1.22757 0.83699 1.01611 0.96857 1.47750 1.17166 1.40581 1.30843 1.21799 0.92336 1.02036 0.86214 1.16241 0.82833 0.81470 0.80310 1.90980 1.24973 1.54287 1.75789 0.94166 0.90231 0.91509 0.93339 0.88347 0.92647 0.95931 0.94546 0.94324 0.98276 0.74583 0.84324 0.82076 0.83835 0.81235 0.89657 0.92473 0.86739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 9.02 71.98 0.65 -2.40 16 2 C -0.08 -2.55 2.27 -10.76 -0.02 -2.57 16 3 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 4 C -0.12 -3.73 5.36 30.67 0.16 -3.57 16 5 C 0.14 5.66 6.52 86.36 0.56 6.22 16 6 N -0.61 -32.68 2.99 -699.11 -2.09 -34.78 16 7 C -0.27 -15.89 9.58 84.03 0.81 -15.08 16 8 H 0.07 3.93 7.89 -2.91 -0.02 3.90 16 9 C -0.05 -3.09 4.91 84.86 0.42 -2.67 16 10 N -0.93 -60.45 11.19 21.65 0.24 -60.21 16 11 Si 0.96 49.36 29.59 68.60 2.03 51.39 16 12 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 13 H -0.29 -15.24 7.11 99.48 0.71 -14.54 16 14 H -0.26 -12.54 7.11 99.48 0.71 -11.84 16 15 C 0.18 9.41 4.89 86.36 0.42 9.84 16 16 C 0.14 5.73 2.06 45.07 0.09 5.83 16 17 H 0.05 2.17 7.58 -2.39 -0.02 2.16 16 18 N -0.70 -22.77 4.37 -442.16 -1.93 -24.70 16 19 C 0.49 17.92 7.86 87.65 0.69 18.61 16 20 O -0.58 -28.29 16.10 -3.05 -0.05 -28.34 16 21 C 0.10 2.69 6.18 85.63 0.53 3.22 16 22 N -0.57 -15.86 2.09 -776.91 -1.63 -17.48 16 23 C 0.52 12.40 8.32 87.94 0.73 13.13 16 24 O -0.50 -13.90 17.76 -2.88 -0.05 -13.95 16 25 C 0.08 1.05 7.65 85.76 0.66 1.70 16 26 N -0.62 -12.84 3.43 -866.43 -2.97 -15.82 16 27 C 0.12 1.61 11.19 127.77 1.43 3.03 16 28 C 0.69 21.31 8.32 179.33 1.49 22.81 16 29 O -0.58 -23.53 17.17 -3.83 -0.07 -23.60 16 30 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.07 1.30 7.35 -2.39 -0.02 1.28 16 33 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.05 2.27 7.93 -2.39 -0.02 2.25 16 36 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.25 15.74 8.31 -92.71 -0.77 14.97 16 38 H 0.04 2.46 6.03 -2.39 -0.01 2.45 16 39 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 40 H 0.42 9.55 8.30 -92.71 -0.77 8.78 16 41 H 0.14 3.21 7.86 -2.39 -0.02 3.19 16 42 H 0.16 2.79 8.01 -2.38 -0.02 2.77 16 43 H 0.14 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.17 0.81 8.14 -2.38 -0.02 0.80 16 45 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.06 1.13 8.04 -2.39 -0.02 1.11 16 47 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -95.70 387.01 2.32 -93.39 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.22 Total: 16.00 kcal Atomic # 6 Polarization: 49.48 SS G_CDS: 8.62 Total: 58.09 kcal Atomic # 7 Polarization: -144.60 SS G_CDS: -8.38 Total: -152.99 kcal Atomic # 8 Polarization: -65.72 SS G_CDS: -0.17 Total: -65.89 kcal Atomic # 14 Polarization: 49.36 SS G_CDS: 2.03 Total: 51.39 kcal Total: -95.70 2.32 -93.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968628202.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.171 kcal (2) G-P(sol) polarization free energy of solvation -95.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds