Wall clock time and date at job start Tue Mar 31 2020 21:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.44548 * 2 1 4 4 C 1.53043 * 109.45821 * 119.96370 * 2 1 3 5 5 C 1.53189 * 109.31079 * 181.38348 * 4 2 1 6 6 N 1.46925 * 108.77486 * 305.36696 * 5 4 2 7 7 C 1.36939 * 120.62667 * 233.62798 * 6 5 4 8 8 H 1.07990 * 120.00529 * 27.68595 * 7 6 5 9 9 C 1.38815 * 119.99827 * 207.68073 * 7 6 5 10 10 N 1.31623 * 120.00073 * 17.33572 * 9 7 6 11 11 Si 1.86796 * 120.00109 * 197.33468 * 9 7 6 12 12 H 1.48500 * 109.47447 * 60.00030 * 11 9 7 13 13 H 1.48505 * 109.47290 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47372 * 300.00123 * 11 9 7 15 15 C 1.46923 * 118.74153 * 53.61206 * 6 5 4 16 16 C 1.53041 * 109.45941 * 240.03185 * 2 1 3 17 17 H 1.09005 * 109.52039 * 58.64889 * 16 2 1 18 18 N 1.46493 * 109.49753 * 298.56893 * 16 2 1 19 19 C 1.34777 * 120.00095 * 155.16395 * 18 16 2 20 20 O 1.21281 * 120.00138 * 359.97438 * 19 18 16 21 21 C 1.50699 * 120.00107 * 180.02562 * 19 18 16 22 22 N 1.46500 * 109.47236 * 179.97438 * 21 19 18 23 23 C 1.34769 * 124.18134 * 269.70068 * 22 21 19 24 24 O 1.21240 * 127.15076 * 359.97438 * 23 22 21 25 25 C 1.51576 * 105.68816 * 179.97438 * 23 22 21 26 26 N 1.47314 * 103.59276 * 0.32152 * 25 23 22 27 27 C 1.46504 * 126.68783 * 179.84241 * 26 25 23 28 28 C 1.33797 * 124.17778 * 89.99422 * 22 21 19 29 29 O 1.21538 * 123.76973 * 359.97002 * 28 22 21 30 30 H 1.08994 * 109.47668 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47120 * 299.96945 * 1 2 3 32 32 H 1.09004 * 109.46779 * 59.96127 * 1 2 3 33 33 H 1.09006 * 109.49469 * 61.43633 * 4 2 1 34 34 H 1.08992 * 109.52589 * 301.35554 * 4 2 1 35 35 H 1.09002 * 109.58690 * 185.58132 * 5 4 2 36 36 H 1.08996 * 109.70589 * 65.22418 * 5 4 2 37 37 H 0.96993 * 120.00081 * 179.97438 * 10 9 7 38 38 H 1.08998 * 109.59007 * 186.60423 * 15 6 5 39 39 H 1.08998 * 109.58556 * 66.17429 * 15 6 5 40 40 H 0.97000 * 119.99970 * 335.16139 * 18 16 2 41 41 H 1.09000 * 109.47554 * 59.99806 * 21 19 18 42 42 H 1.09000 * 109.46912 * 299.99674 * 21 19 18 43 43 H 1.08998 * 110.76832 * 241.71392 * 25 23 22 44 44 H 1.09002 * 110.43315 * 118.76168 * 25 23 22 45 45 H 1.09004 * 109.46488 * 179.97438 * 27 26 25 46 46 H 1.09001 * 109.46932 * 299.97228 * 27 26 25 47 47 H 1.08997 * 109.47211 * 59.97769 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0398 -0.7207 1.2501 5 6 3.5713 -0.6886 1.2643 6 7 4.0678 -1.2489 0.0000 7 6 4.9757 -2.2740 0.0001 8 1 5.0083 -2.9664 0.8282 9 6 5.8540 -2.4233 -1.0644 10 7 6.0601 -1.4216 -1.8930 11 14 6.7436 -4.0457 -1.3208 12 1 5.7486 -5.1295 -1.5222 13 1 7.6179 -3.9472 -2.5172 14 1 7.5722 -4.3502 -0.1266 15 6 3.5714 -0.6886 -1.2642 16 6 2.0399 -0.7208 -1.2501 17 1 1.6572 -0.2212 -2.1401 18 7 1.5801 -2.1116 -1.2342 19 6 1.4547 -2.7931 -2.3902 20 8 1.7220 -2.2549 -3.4436 21 6 0.9812 -4.2237 -2.3739 22 7 0.9293 -4.7366 -3.7453 23 6 -0.1546 -4.6585 -4.5423 24 8 -1.2301 -4.1695 -4.2699 25 6 0.2506 -5.3091 -5.8500 26 7 1.6442 -5.7236 -5.6133 27 6 2.5256 -6.4116 -6.5600 28 6 1.9504 -5.3454 -4.3592 29 8 3.0329 -5.5369 -3.8410 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5134 0.8903 32 1 -0.3633 0.5145 -0.8897 33 1 1.6978 -1.7556 1.2383 34 1 1.6572 -0.2212 2.1401 35 1 3.9416 -1.2845 2.0985 36 1 3.9164 0.3400 1.3685 37 1 6.6742 -1.5258 -2.6366 38 1 3.9416 -1.2846 -2.0984 39 1 3.9143 0.3409 -1.3673 40 1 1.3660 -2.5421 -0.3918 41 1 -0.0133 -4.2723 -1.9304 42 1 1.6714 -4.8282 -1.7855 43 1 0.1974 -4.5936 -6.6705 44 1 -0.3778 -6.1760 -6.0545 45 1 3.4961 -6.5828 -6.0941 46 1 2.0830 -7.3677 -6.8394 47 1 2.6535 -5.7962 -7.4504 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968628203.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:23 Heat of formation + Delta-G solvation = -40.673949 kcal Electronic energy + Delta-G solvation = -31699.156596 eV Core-core repulsion = 27498.201718 eV Total energy + Delta-G solvation = -4200.954878 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.32399 -39.54231 -38.58730 -37.57912 -36.12310 -35.06693 -34.08938 -32.81884 -31.00137 -30.44859 -29.16009 -27.63912 -27.04578 -26.18662 -24.00210 -22.51889 -22.28394 -21.11171 -21.04036 -19.91824 -18.67191 -17.77568 -17.49583 -16.75553 -16.70332 -16.34271 -15.64778 -15.13229 -14.92185 -14.81744 -14.47765 -14.36906 -14.11683 -14.01080 -13.77121 -13.68882 -13.32095 -13.21586 -13.02634 -12.74860 -12.55386 -12.51104 -12.05012 -11.91334 -11.53922 -11.35235 -11.06809 -10.91264 -10.84273 -10.58700 -10.48097 -10.27937 -10.23196 -10.17642 -9.86437 -9.64977 -9.47089 -9.21801 -9.05054 -8.38367 -8.35175 -6.59183 -5.69580 -3.12682 1.62149 1.96625 2.84094 3.04308 3.10777 3.48060 3.55883 3.62201 3.75801 3.96630 4.56804 4.60236 4.80878 4.98391 5.04390 5.06411 5.22313 5.23248 5.26051 5.28885 5.37621 5.46530 5.49573 5.51976 5.60870 5.79398 5.89857 5.95005 6.02474 6.17090 6.30975 6.32790 6.38549 6.46504 6.56019 6.67705 6.77817 6.90252 7.01579 7.08789 7.30344 7.40071 7.72078 7.87277 8.03294 8.13824 8.53390 8.72817 9.28609 9.93254 10.47996 11.38152 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010195 B = 0.005267 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.882051 B = 5315.335365 C = 7456.739828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.077 0.923 4 C -0.128 4.128 5 C 0.142 3.858 6 N -0.587 5.587 7 C -0.257 4.257 8 H 0.063 0.937 9 C 0.011 3.989 10 N -0.898 5.898 11 Si 0.896 3.104 12 H -0.277 1.277 13 H -0.292 1.292 14 H -0.286 1.286 15 C 0.161 3.839 16 C 0.128 3.872 17 H 0.074 0.926 18 N -0.692 5.692 19 C 0.503 3.497 20 O -0.538 6.538 21 C 0.099 3.901 22 N -0.557 5.557 23 C 0.528 3.472 24 O -0.474 6.474 25 C 0.068 3.932 26 N -0.632 5.632 27 C 0.121 3.879 28 C 0.701 3.299 29 O -0.524 6.524 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.017 0.983 37 H 0.254 0.746 38 H 0.097 0.903 39 H 0.024 0.976 40 H 0.396 0.604 41 H 0.119 0.881 42 H 0.126 0.874 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.090 0.910 46 H 0.066 0.934 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.789 -7.209 -4.575 17.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.096 0.904 4 C -0.168 4.168 5 C 0.016 3.984 6 N -0.309 5.309 7 C -0.387 4.387 8 H 0.081 0.919 9 C -0.189 4.189 10 N -0.541 5.541 11 Si 0.726 3.274 12 H -0.203 1.203 13 H -0.218 1.218 14 H -0.212 1.212 15 C 0.034 3.966 16 C 0.022 3.978 17 H 0.093 0.907 18 N -0.343 5.343 19 C 0.287 3.713 20 O -0.415 6.415 21 C -0.026 4.026 22 N -0.302 5.302 23 C 0.316 3.684 24 O -0.345 6.345 25 C -0.058 4.058 26 N -0.373 5.373 27 C -0.020 4.020 28 C 0.403 3.597 29 O -0.395 6.395 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.035 0.965 37 H 0.064 0.936 38 H 0.115 0.885 39 H 0.042 0.958 40 H 0.231 0.769 41 H 0.137 0.863 42 H 0.144 0.856 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.109 0.891 46 H 0.084 0.916 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.336 -6.690 -5.061 16.609 hybrid contribution 0.491 -0.910 0.176 1.049 sum -13.845 -7.600 -4.885 16.532 Atomic orbital electron populations 1.21847 0.95962 1.01361 1.00946 1.21314 0.94590 0.99886 0.95477 0.90448 1.22078 0.99264 0.99391 0.96039 1.20925 0.90669 0.96510 0.90325 1.43963 1.48337 1.39570 0.99057 1.19000 1.10237 1.03168 1.06276 0.91931 1.24980 0.97095 0.97131 0.99654 1.69988 1.37383 1.29078 1.17667 0.86470 0.79425 0.84589 0.76961 1.20277 1.21801 1.21219 1.21192 0.86607 0.97715 0.91104 1.21804 0.99000 0.80146 0.96877 0.90748 1.45689 1.66648 1.14141 1.07836 1.20379 0.78441 0.87693 0.84821 1.90692 1.50330 1.69573 1.30905 1.21485 1.05307 0.94746 0.81065 1.45800 1.14392 1.54309 1.15683 1.20819 0.83412 0.77834 0.86362 1.90798 1.22679 1.43077 1.77897 1.22416 0.84028 1.01891 0.97451 1.47380 1.13764 1.62365 1.13780 1.21513 0.93908 0.95532 0.91077 1.15824 0.83658 0.78387 0.81866 1.91082 1.21479 1.58885 1.68045 0.93040 0.93146 0.93146 0.92702 0.92786 0.92840 0.96521 0.93639 0.88485 0.95803 0.76945 0.86303 0.85578 0.86088 0.86256 0.89101 0.91553 0.91444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.05 37.16 0.34 -1.52 16 2 C -0.09 -1.47 2.48 -90.57 -0.22 -1.70 16 3 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 4 C -0.13 -2.01 5.20 -26.61 -0.14 -2.15 16 5 C 0.14 2.85 6.52 -3.71 -0.02 2.82 16 6 N -0.59 -14.38 2.91 -172.33 -0.50 -14.88 16 7 C -0.26 -7.10 9.59 -15.06 -0.14 -7.25 16 8 H 0.06 1.69 7.89 -52.49 -0.41 1.28 16 9 C 0.01 0.32 4.91 -17.43 -0.09 0.23 16 10 N -0.90 -27.39 11.19 55.49 0.62 -26.77 16 11 Si 0.90 23.35 29.59 -169.99 -5.03 18.32 16 12 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 13 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 14 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 15 C 0.16 3.93 4.91 -3.71 -0.02 3.91 16 16 C 0.13 2.46 2.24 -67.81 -0.15 2.31 16 17 H 0.07 1.51 7.58 -51.93 -0.39 1.11 16 18 N -0.69 -12.35 4.25 -53.69 -0.23 -12.58 16 19 C 0.50 9.66 7.86 -10.99 -0.09 9.57 16 20 O -0.54 -12.47 16.09 5.56 0.09 -12.38 16 21 C 0.10 1.51 6.18 -5.19 -0.03 1.48 16 22 N -0.56 -8.64 2.09 -122.02 -0.26 -8.90 16 23 C 0.53 7.08 8.31 -10.56 -0.09 6.99 16 24 O -0.47 -7.26 17.75 5.59 0.10 -7.16 16 25 C 0.07 0.62 7.66 -4.32 -0.03 0.59 16 26 N -0.63 -7.56 3.42 -187.94 -0.64 -8.20 16 27 C 0.12 1.04 11.33 59.85 0.68 1.72 16 28 C 0.70 11.73 8.31 -88.02 -0.73 11.00 16 29 O -0.52 -11.21 16.92 5.33 0.09 -11.12 16 30 H 0.05 0.64 7.54 -51.93 -0.39 0.25 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.83 6.40 -51.93 -0.33 0.50 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 38 H 0.10 2.84 6.04 -51.93 -0.31 2.52 16 39 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.40 6.14 6.64 -40.82 -0.27 5.87 16 41 H 0.12 1.39 8.00 -51.93 -0.42 0.97 16 42 H 0.13 1.89 7.86 -51.93 -0.41 1.49 16 43 H 0.12 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.09 0.96 7.67 -51.93 -0.40 0.56 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 383.36 15.07 5.78 5.78 Total: -1.00 -38.32 383.36 -7.84 -46.15 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -7.11 Total: 3.72 kcal Atomic # 6 Polarization: 28.75 SS G_CDS: -0.74 Total: 28.01 kcal Atomic # 7 Polarization: -70.32 SS G_CDS: -1.01 Total: -71.32 kcal Atomic # 8 Polarization: -30.93 SS G_CDS: 0.28 Total: -30.65 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -5.03 Total: 18.32 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -38.32 -7.84 -46.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968628203.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.480 kcal (2) G-P(sol) polarization free energy of solvation -38.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds