Wall clock time and date at job start Tue Mar 31 2020 21:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.44548 * 2 1 4 4 C 1.53043 * 109.45821 * 119.96370 * 2 1 3 5 5 C 1.53189 * 109.31079 * 181.38348 * 4 2 1 6 6 N 1.46925 * 108.77486 * 305.36696 * 5 4 2 7 7 C 1.36939 * 120.62667 * 233.62798 * 6 5 4 8 8 H 1.07990 * 120.00529 * 27.68595 * 7 6 5 9 9 C 1.38815 * 119.99827 * 207.68073 * 7 6 5 10 10 N 1.31623 * 120.00073 * 17.33572 * 9 7 6 11 11 Si 1.86796 * 120.00109 * 197.33468 * 9 7 6 12 12 H 1.48500 * 109.47447 * 60.00030 * 11 9 7 13 13 H 1.48505 * 109.47290 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47372 * 300.00123 * 11 9 7 15 15 C 1.46923 * 118.74153 * 53.61206 * 6 5 4 16 16 C 1.53041 * 109.45941 * 240.03185 * 2 1 3 17 17 H 1.09005 * 109.52039 * 58.64889 * 16 2 1 18 18 N 1.46493 * 109.49753 * 298.56893 * 16 2 1 19 19 C 1.34777 * 120.00095 * 155.16395 * 18 16 2 20 20 O 1.21281 * 120.00138 * 359.97438 * 19 18 16 21 21 C 1.50699 * 120.00107 * 180.02562 * 19 18 16 22 22 N 1.46500 * 109.47236 * 179.97438 * 21 19 18 23 23 C 1.34769 * 124.18134 * 269.70068 * 22 21 19 24 24 O 1.21240 * 127.15076 * 359.97438 * 23 22 21 25 25 C 1.51576 * 105.68816 * 179.97438 * 23 22 21 26 26 N 1.47314 * 103.59276 * 0.32152 * 25 23 22 27 27 C 1.46504 * 126.68783 * 179.84241 * 26 25 23 28 28 C 1.33797 * 124.17778 * 89.99422 * 22 21 19 29 29 O 1.21538 * 123.76973 * 359.97002 * 28 22 21 30 30 H 1.08994 * 109.47668 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47120 * 299.96945 * 1 2 3 32 32 H 1.09004 * 109.46779 * 59.96127 * 1 2 3 33 33 H 1.09006 * 109.49469 * 61.43633 * 4 2 1 34 34 H 1.08992 * 109.52589 * 301.35554 * 4 2 1 35 35 H 1.09002 * 109.58690 * 185.58132 * 5 4 2 36 36 H 1.08996 * 109.70589 * 65.22418 * 5 4 2 37 37 H 0.96993 * 120.00081 * 179.97438 * 10 9 7 38 38 H 1.08998 * 109.59007 * 186.60423 * 15 6 5 39 39 H 1.08998 * 109.58556 * 66.17429 * 15 6 5 40 40 H 0.97000 * 119.99970 * 335.16139 * 18 16 2 41 41 H 1.09000 * 109.47554 * 59.99806 * 21 19 18 42 42 H 1.09000 * 109.46912 * 299.99674 * 21 19 18 43 43 H 1.08998 * 110.76832 * 241.71392 * 25 23 22 44 44 H 1.09002 * 110.43315 * 118.76168 * 25 23 22 45 45 H 1.09004 * 109.46488 * 179.97438 * 27 26 25 46 46 H 1.09001 * 109.46932 * 299.97228 * 27 26 25 47 47 H 1.08997 * 109.47211 * 59.97769 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0398 -0.7207 1.2501 5 6 3.5713 -0.6886 1.2643 6 7 4.0678 -1.2489 0.0000 7 6 4.9757 -2.2740 0.0001 8 1 5.0083 -2.9664 0.8282 9 6 5.8540 -2.4233 -1.0644 10 7 6.0601 -1.4216 -1.8930 11 14 6.7436 -4.0457 -1.3208 12 1 5.7486 -5.1295 -1.5222 13 1 7.6179 -3.9472 -2.5172 14 1 7.5722 -4.3502 -0.1266 15 6 3.5714 -0.6886 -1.2642 16 6 2.0399 -0.7208 -1.2501 17 1 1.6572 -0.2212 -2.1401 18 7 1.5801 -2.1116 -1.2342 19 6 1.4547 -2.7931 -2.3902 20 8 1.7220 -2.2549 -3.4436 21 6 0.9812 -4.2237 -2.3739 22 7 0.9293 -4.7366 -3.7453 23 6 -0.1546 -4.6585 -4.5423 24 8 -1.2301 -4.1695 -4.2699 25 6 0.2506 -5.3091 -5.8500 26 7 1.6442 -5.7236 -5.6133 27 6 2.5256 -6.4116 -6.5600 28 6 1.9504 -5.3454 -4.3592 29 8 3.0329 -5.5369 -3.8410 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5134 0.8903 32 1 -0.3633 0.5145 -0.8897 33 1 1.6978 -1.7556 1.2383 34 1 1.6572 -0.2212 2.1401 35 1 3.9416 -1.2845 2.0985 36 1 3.9164 0.3400 1.3685 37 1 6.6742 -1.5258 -2.6366 38 1 3.9416 -1.2846 -2.0984 39 1 3.9143 0.3409 -1.3673 40 1 1.3660 -2.5421 -0.3918 41 1 -0.0133 -4.2723 -1.9304 42 1 1.6714 -4.8282 -1.7855 43 1 0.1974 -4.5936 -6.6705 44 1 -0.3778 -6.1760 -6.0545 45 1 3.4961 -6.5828 -6.0941 46 1 2.0830 -7.3677 -6.8394 47 1 2.6535 -5.7962 -7.4504 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968628203.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:22 Heat of formation + Delta-G solvation = -69.255320 kcal Electronic energy + Delta-G solvation = -31700.395978 eV Core-core repulsion = 27498.201718 eV Total energy + Delta-G solvation = -4202.194260 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.43398 -41.08587 -39.75493 -39.15151 -37.33440 -36.21473 -35.92469 -34.39938 -32.86495 -31.68586 -30.54011 -29.02864 -28.40052 -27.19848 -25.81327 -23.95991 -23.49758 -22.78111 -22.39202 -21.13978 -20.32023 -19.04837 -18.76044 -18.48538 -17.84254 -17.63199 -16.99818 -16.85770 -16.32680 -16.12314 -15.81793 -15.73282 -15.51713 -15.34928 -15.10059 -14.99041 -14.81215 -14.71340 -14.49744 -14.11285 -13.61386 -13.42288 -13.39603 -13.25950 -13.13573 -13.03847 -12.71555 -12.62287 -12.49883 -12.29533 -12.14602 -11.96803 -11.68444 -11.56066 -11.39928 -11.30686 -11.08038 -10.69192 -10.53080 -10.01112 -9.99675 -8.66836 -7.89426 -5.32793 0.56601 0.89960 1.34456 1.44143 1.48254 1.56341 1.79812 2.01712 2.38726 2.46611 2.99543 3.28351 3.63074 3.65973 3.70363 3.88823 3.98938 4.02855 4.12110 4.14667 4.23052 4.30190 4.33466 4.51361 4.64806 4.66876 4.70817 4.80529 4.84300 4.89123 4.92379 4.96311 5.09214 5.17323 5.24553 5.26132 5.36700 5.46939 5.51736 5.58403 5.68786 5.69337 5.99626 6.26591 6.36435 6.56786 6.94042 7.12557 7.25815 7.86716 8.36201 9.15076 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010195 B = 0.005267 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.882051 B = 5315.335365 C = 7456.739828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.086 4.086 3 H 0.075 0.925 4 C -0.115 4.115 5 C 0.135 3.865 6 N -0.599 5.599 7 C -0.246 4.246 8 H 0.072 0.928 9 C -0.047 4.047 10 N -0.933 5.933 11 Si 0.948 3.052 12 H -0.288 1.288 13 H -0.305 1.305 14 H -0.265 1.265 15 C 0.171 3.829 16 C 0.139 3.861 17 H 0.060 0.940 18 N -0.682 5.682 19 C 0.493 3.507 20 O -0.585 6.585 21 C 0.102 3.898 22 N -0.566 5.566 23 C 0.522 3.478 24 O -0.495 6.495 25 C 0.078 3.922 26 N -0.623 5.623 27 C 0.113 3.887 28 C 0.688 3.312 29 O -0.587 6.587 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.012 0.988 37 H 0.242 0.758 38 H 0.044 0.956 39 H -0.005 1.005 40 H 0.410 0.590 41 H 0.159 0.841 42 H 0.125 0.875 43 H 0.148 0.852 44 H 0.170 0.830 45 H 0.063 0.937 46 H 0.107 0.893 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.959 -8.452 -3.758 20.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.105 4.105 3 H 0.093 0.907 4 C -0.154 4.154 5 C 0.010 3.990 6 N -0.323 5.323 7 C -0.377 4.377 8 H 0.090 0.910 9 C -0.242 4.242 10 N -0.579 5.579 11 Si 0.778 3.222 12 H -0.215 1.215 13 H -0.232 1.232 14 H -0.191 1.191 15 C 0.044 3.956 16 C 0.033 3.967 17 H 0.078 0.922 18 N -0.333 5.333 19 C 0.279 3.721 20 O -0.466 6.466 21 C -0.023 4.023 22 N -0.310 5.310 23 C 0.312 3.688 24 O -0.367 6.367 25 C -0.046 4.046 26 N -0.362 5.362 27 C -0.026 4.026 28 C 0.390 3.610 29 O -0.464 6.464 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.077 0.923 36 H 0.030 0.970 37 H 0.051 0.949 38 H 0.062 0.938 39 H 0.013 0.987 40 H 0.247 0.753 41 H 0.176 0.824 42 H 0.143 0.857 43 H 0.165 0.835 44 H 0.188 0.812 45 H 0.082 0.918 46 H 0.125 0.875 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.568 -7.954 -4.219 19.741 hybrid contribution 1.455 -0.479 -0.083 1.534 sum -16.113 -8.433 -4.302 18.689 Atomic orbital electron populations 1.21757 0.92873 1.02330 1.02187 1.21269 0.96969 0.99046 0.93241 0.90673 1.21961 0.95378 1.00639 0.97417 1.21168 0.93876 0.95888 0.88035 1.44161 1.48069 1.39379 1.00657 1.19371 1.09207 1.03525 1.05577 0.91038 1.25617 0.98860 0.99358 1.00382 1.70153 1.38714 1.30724 1.18323 0.85616 0.78268 0.81407 0.76918 1.21460 1.23161 1.19052 1.20850 0.90221 0.94820 0.89676 1.21462 0.95037 0.81552 0.98682 0.92209 1.45590 1.65790 1.13609 1.08359 1.21173 0.77493 0.89150 0.84300 1.90660 1.52335 1.70974 1.32609 1.21546 1.07173 0.91632 0.81985 1.45974 1.14959 1.54142 1.15969 1.21536 0.82525 0.77351 0.87392 1.90785 1.23248 1.44117 1.78568 1.22755 0.82579 1.04007 0.95296 1.47659 1.15280 1.61039 1.12220 1.21816 0.92716 0.97647 0.90466 1.16205 0.83071 0.78473 0.83277 1.91027 1.23917 1.61656 1.69794 0.92206 0.90413 0.93455 0.91610 0.88876 0.92314 0.96961 0.94858 0.93754 0.98687 0.75289 0.82365 0.85726 0.83485 0.81246 0.91819 0.87515 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 9.05 71.98 0.65 -2.33 16 2 C -0.09 -2.53 2.48 -10.76 -0.03 -2.55 16 3 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 4 C -0.12 -3.22 5.20 30.67 0.16 -3.06 16 5 C 0.14 5.22 6.52 86.36 0.56 5.79 16 6 N -0.60 -29.82 2.91 -699.13 -2.04 -31.86 16 7 C -0.25 -13.81 9.59 84.03 0.81 -13.00 16 8 H 0.07 3.83 7.89 -2.92 -0.02 3.81 16 9 C -0.05 -2.81 4.91 84.86 0.42 -2.39 16 10 N -0.93 -60.18 11.19 21.65 0.24 -59.94 16 11 Si 0.95 50.00 29.59 68.60 2.03 52.03 16 12 H -0.29 -15.56 7.11 99.48 0.71 -14.85 16 13 H -0.30 -16.54 7.11 99.48 0.71 -15.84 16 14 H -0.27 -12.93 7.11 99.48 0.71 -12.23 16 15 C 0.17 8.80 4.91 86.36 0.42 9.22 16 16 C 0.14 5.43 2.24 45.07 0.10 5.53 16 17 H 0.06 2.52 7.58 -2.38 -0.02 2.50 16 18 N -0.68 -24.18 4.25 -442.17 -1.88 -26.06 16 19 C 0.49 19.31 7.86 87.66 0.69 20.00 16 20 O -0.59 -28.36 16.09 -3.03 -0.05 -28.41 16 21 C 0.10 3.08 6.18 85.63 0.53 3.61 16 22 N -0.57 -17.39 2.09 -777.22 -1.63 -19.01 16 23 C 0.52 13.08 8.31 87.94 0.73 13.81 16 24 O -0.50 -14.26 17.75 -2.91 -0.05 -14.31 16 25 C 0.08 1.16 7.66 85.76 0.66 1.81 16 26 N -0.62 -13.90 3.42 -866.96 -2.96 -16.86 16 27 C 0.11 1.75 11.33 127.77 1.45 3.20 16 28 C 0.69 23.32 8.31 179.44 1.49 24.81 16 29 O -0.59 -26.46 16.92 -3.83 -0.06 -26.52 16 30 H 0.06 1.24 7.54 -2.39 -0.02 1.23 16 31 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 1.73 6.40 -2.38 -0.02 1.72 16 34 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.06 2.20 7.93 -2.39 -0.02 2.18 16 36 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.24 15.58 8.31 -92.71 -0.77 14.81 16 38 H 0.04 2.76 6.04 -2.39 -0.01 2.75 16 39 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 40 H 0.41 12.00 6.64 -92.71 -0.62 11.39 16 41 H 0.16 3.39 8.00 -2.39 -0.02 3.37 16 42 H 0.12 3.80 7.86 -2.39 -0.02 3.78 16 43 H 0.15 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.17 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.06 1.37 7.67 -2.38 -0.02 1.35 16 46 H 0.11 0.82 8.14 -2.39 -0.02 0.81 16 47 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -91.96 383.36 2.62 -89.35 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.38 Total: 17.15 kcal Atomic # 6 Polarization: 55.81 SS G_CDS: 8.64 Total: 64.45 kcal Atomic # 7 Polarization: -145.47 SS G_CDS: -8.27 Total: -153.73 kcal Atomic # 8 Polarization: -69.08 SS G_CDS: -0.17 Total: -69.24 kcal Atomic # 14 Polarization: 50.00 SS G_CDS: 2.03 Total: 52.03 kcal Total: -91.96 2.62 -89.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968628203.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.093 kcal (2) G-P(sol) polarization free energy of solvation -91.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds