Wall clock time and date at job start Tue Mar 31 2020 21:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.99661 * 2 1 4 4 C 1.54326 * 109.88167 * 238.91242 * 2 1 3 5 5 H 1.09004 * 110.72342 * 100.02709 * 4 2 1 6 6 N 1.46501 * 110.87135 * 336.82163 * 4 2 1 7 7 C 1.36937 * 119.99791 * 96.86836 * 6 4 2 8 8 H 1.07996 * 120.00204 * 359.97438 * 7 6 4 9 9 C 1.38818 * 119.99312 * 180.02562 * 7 6 4 10 10 N 1.31613 * 120.00266 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99541 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47342 * 59.99585 * 11 9 7 13 13 H 1.48492 * 109.47302 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.46964 * 300.00015 * 11 9 7 15 15 C 1.55157 * 102.94114 * 218.38960 * 4 2 1 16 16 C 1.54911 * 101.58094 * 35.49815 * 15 4 2 17 17 N 1.47012 * 109.88341 * 121.09934 * 2 1 3 18 18 C 1.34779 * 125.65049 * 298.62436 * 17 2 1 19 19 O 1.21281 * 119.99900 * 359.71496 * 18 17 2 20 20 C 1.50697 * 120.00084 * 179.71515 * 18 17 2 21 21 N 1.46498 * 109.47041 * 180.02562 * 20 18 17 22 22 C 1.34530 * 126.69081 * 90.02832 * 21 20 18 23 23 O 1.21540 * 123.76874 * 359.95839 * 22 21 20 24 24 N 1.33790 * 112.45758 * 179.97438 * 22 21 20 25 25 C 1.34771 * 111.64522 * 359.97438 * 24 22 21 26 26 O 1.21229 * 127.15842 * 179.97438 * 25 24 22 27 27 C 1.47317 * 126.69124 * 269.70542 * 21 20 18 28 28 C 1.52999 * 110.60135 * 298.56794 * 27 21 20 29 29 C 1.53002 * 110.59472 * 61.51383 * 27 21 20 30 30 H 1.09006 * 109.47245 * 304.35080 * 1 2 3 31 31 H 1.09004 * 109.47434 * 64.34749 * 1 2 3 32 32 H 1.08995 * 109.47142 * 184.35190 * 1 2 3 33 33 H 0.97001 * 119.99571 * 276.86909 * 6 4 2 34 34 H 0.97001 * 119.99992 * 180.02562 * 10 9 7 35 35 H 1.09009 * 110.99923 * 277.42823 * 15 4 2 36 36 H 1.09000 * 111.03953 * 153.59303 * 15 4 2 37 37 H 1.08999 * 110.36605 * 204.15602 * 16 15 4 38 38 H 1.08999 * 110.36368 * 81.83106 * 16 15 4 39 39 H 1.09001 * 109.47387 * 300.00312 * 20 18 17 40 40 H 1.09003 * 109.47303 * 60.00039 * 20 18 17 41 41 H 0.96999 * 124.17952 * 180.02562 * 24 22 21 42 42 H 1.09000 * 109.47292 * 59.99680 * 28 27 21 43 43 H 1.08993 * 109.47276 * 179.97438 * 28 27 21 44 44 H 1.09005 * 109.46977 * 300.00080 * 28 27 21 45 45 H 1.08998 * 109.47289 * 59.99978 * 29 27 21 46 46 H 1.08996 * 109.47207 * 180.02562 * 29 27 21 47 47 H 1.09000 * 109.46865 * 300.00092 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7494 -1.2428 5 1 2.3529 -0.0457 -2.0202 6 7 1.0489 -1.6852 -1.7515 7 6 0.2318 -1.3161 -2.7865 8 1 0.3286 -0.3351 -3.2275 9 6 -0.7217 -2.2027 -3.2680 10 7 -0.8399 -3.3981 -2.7301 11 14 -1.8369 -1.6991 -4.6794 12 1 -1.0120 -1.3770 -5.8714 13 1 -2.7598 -2.8162 -5.0040 14 1 -2.6250 -0.5037 -4.2853 15 6 3.2876 -1.5142 -0.6926 16 6 2.8145 -1.8794 0.7366 17 7 2.0300 -0.7141 1.1838 18 6 1.8038 -0.3646 2.4657 19 8 1.1402 0.6187 2.7181 20 6 2.3753 -1.1957 3.5853 21 7 1.9898 -0.6121 4.8725 22 6 0.8854 -0.8972 5.5859 23 8 0.0440 -1.7013 5.2359 24 7 0.8168 -0.1963 6.7235 25 6 1.8777 0.6222 6.8679 26 8 2.0987 1.3788 7.7889 27 6 2.7392 0.3966 5.6414 28 6 4.1150 -0.1421 6.0387 29 6 2.8780 1.6916 4.8383 30 1 -0.3634 0.5799 0.8485 31 1 -0.3634 0.4449 -0.9264 32 1 -0.3633 -1.0246 0.0780 33 1 0.9618 -2.5662 -1.3550 34 1 -1.5059 -4.0177 -3.0669 35 1 4.1654 -0.8686 -0.6605 36 1 3.4859 -2.4108 -1.2797 37 1 3.6716 -2.0338 1.3920 38 1 2.1886 -2.7715 0.7125 39 1 1.9882 -2.2124 3.5173 40 1 3.4622 -1.2147 3.5055 41 1 0.0932 -0.2689 7.3654 42 1 4.6799 -0.3934 5.1410 43 1 4.6530 0.6178 6.6053 44 1 3.9923 -1.0346 6.6525 45 1 1.8877 2.0855 4.6101 46 1 3.4348 2.4238 5.4230 47 1 3.4108 1.4877 3.9095 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987314344.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:24 Heat of formation + Delta-G solvation = -49.686017 kcal Electronic energy + Delta-G solvation = -31055.122055 eV Core-core repulsion = 26853.776384 eV Total energy + Delta-G solvation = -4201.345671 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.73178 -39.94619 -38.87449 -37.62851 -36.70893 -35.02895 -34.05048 -32.60968 -31.55616 -30.76567 -29.29648 -27.88151 -27.71835 -25.27265 -24.61790 -23.45231 -22.86667 -21.60832 -21.06434 -19.83466 -18.64316 -18.29925 -17.60319 -17.12122 -16.70163 -16.46439 -16.17088 -15.98015 -15.36736 -14.90631 -14.73018 -14.61560 -14.23837 -13.98495 -13.66249 -13.55989 -13.46389 -13.10850 -12.95218 -12.79615 -12.63943 -12.53609 -12.49503 -12.08167 -11.86036 -11.52123 -11.36570 -11.02566 -10.90897 -10.87310 -10.64893 -10.58712 -10.55785 -10.39059 -10.22851 -10.11440 -9.99254 -9.69252 -9.09118 -8.95328 -8.30862 -7.07331 -5.84301 -3.13957 1.34384 1.89124 2.64681 2.76772 2.81821 3.32068 3.40478 3.45784 3.46298 3.65707 4.18113 4.37912 4.52251 4.55301 4.62822 4.90448 4.96689 5.08970 5.10598 5.21197 5.27487 5.32959 5.38410 5.51612 5.52049 5.55808 5.66524 5.68649 5.76529 5.80447 5.93228 6.04479 6.05135 6.19128 6.24151 6.40947 6.52038 6.62351 6.79280 6.81175 7.00039 7.09460 7.33380 7.63042 7.80739 7.91088 8.32683 8.36660 9.45138 9.98443 10.33294 11.37570 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021314 B = 0.002827 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.364013 B = 9901.844818 C =10311.712339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.110 3.890 3 H 0.059 0.941 4 C 0.171 3.829 5 H 0.075 0.925 6 N -0.708 5.708 7 C -0.243 4.243 8 H 0.071 0.929 9 C -0.007 4.007 10 N -0.929 5.929 11 Si 0.905 3.095 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.285 1.285 15 C -0.145 4.145 16 C 0.098 3.902 17 N -0.602 5.602 18 C 0.505 3.495 19 O -0.532 6.532 20 C 0.135 3.865 21 N -0.598 5.598 22 C 0.707 3.293 23 O -0.534 6.534 24 N -0.679 5.679 25 C 0.538 3.462 26 O -0.470 6.470 27 C 0.120 3.880 28 C -0.145 4.145 29 C -0.139 4.139 30 H 0.038 0.962 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.385 0.615 34 H 0.257 0.743 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.119 0.881 40 H 0.113 0.887 41 H 0.431 0.569 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.067 0.933 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.160 4.922 16.644 22.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.005 3.995 3 H 0.077 0.923 4 C 0.058 3.942 5 H 0.093 0.907 6 N -0.347 5.347 7 C -0.374 4.374 8 H 0.089 0.911 9 C -0.204 4.204 10 N -0.577 5.577 11 Si 0.736 3.264 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.184 4.184 16 C -0.025 4.025 17 N -0.337 5.337 18 C 0.291 3.709 19 O -0.408 6.408 20 C 0.010 3.990 21 N -0.337 5.337 22 C 0.408 3.592 23 O -0.406 6.406 24 N -0.348 5.348 25 C 0.323 3.677 26 O -0.339 6.339 27 C 0.031 3.969 28 C -0.203 4.203 29 C -0.197 4.197 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.219 0.781 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.137 0.863 40 H 0.131 0.869 41 H 0.273 0.727 42 H 0.098 0.902 43 H 0.104 0.896 44 H 0.086 0.914 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 13.448 5.441 16.803 22.199 hybrid contribution -1.203 -0.183 -0.390 1.278 sum 12.245 5.259 16.412 21.142 Atomic orbital electron populations 1.21750 0.93723 1.02864 1.00707 1.22749 0.96196 0.95294 0.85291 0.92265 1.21239 0.88495 0.92227 0.92254 0.90728 1.42315 1.38480 1.14687 1.39210 1.19135 1.11051 0.98883 1.08297 0.91124 1.24722 0.99678 0.96191 0.99806 1.69633 1.37423 1.06662 1.43942 0.86305 0.80554 0.77300 0.82234 1.21246 1.21730 1.21200 1.23157 0.98605 1.01872 0.94794 1.22368 0.94481 0.89294 0.96337 1.48641 1.51702 1.28390 1.04922 1.20531 0.81530 0.86045 0.82828 1.90682 1.39464 1.27672 1.83024 1.21145 1.01331 0.97702 0.78801 1.47171 1.22636 1.43329 1.20528 1.15763 0.82518 0.80978 0.79955 1.91060 1.41400 1.36314 1.71861 1.44324 1.26031 1.40881 1.23607 1.20728 0.81535 0.78429 0.86994 1.90815 1.73414 1.35014 1.34646 1.21556 0.93679 0.91788 0.89896 1.21983 0.92917 1.02295 1.03108 1.21951 1.04588 0.93442 0.99740 0.94295 0.91525 0.91589 0.78053 0.93349 0.91047 0.89436 0.91514 0.90872 0.86315 0.86877 0.72655 0.90218 0.89634 0.91385 0.90389 0.90445 0.90615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 8.07 37.16 0.30 -2.42 16 2 C 0.11 1.90 3.44 -66.96 -0.23 1.67 16 3 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 4 C 0.17 2.96 3.52 -66.09 -0.23 2.73 16 5 H 0.07 1.30 8.05 -51.93 -0.42 0.88 16 6 N -0.71 -15.81 3.83 -51.65 -0.20 -16.00 16 7 C -0.24 -6.20 8.60 -15.06 -0.13 -6.33 16 8 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 9 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 10 N -0.93 -26.77 13.06 55.49 0.72 -26.04 16 11 Si 0.91 21.70 29.55 -169.99 -5.02 16.67 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 15 C -0.15 -1.89 6.70 -24.58 -0.16 -2.06 16 16 C 0.10 1.19 6.62 -2.53 -0.02 1.17 16 17 N -0.60 -8.82 3.07 -163.02 -0.50 -9.32 16 18 C 0.50 7.38 7.30 -10.99 -0.08 7.30 16 19 O -0.53 -9.54 13.83 5.56 0.08 -9.46 16 20 C 0.14 1.41 5.34 -5.20 -0.03 1.39 16 21 N -0.60 -6.66 1.99 -166.45 -0.33 -6.99 16 22 C 0.71 9.40 8.68 -88.02 -0.76 8.64 16 23 O -0.53 -9.18 17.71 5.33 0.09 -9.09 16 24 N -0.68 -7.16 5.70 -15.79 -0.09 -7.25 16 25 C 0.54 5.63 7.48 -10.56 -0.08 5.55 16 26 O -0.47 -5.74 18.02 5.60 0.10 -5.64 16 27 C 0.12 1.09 1.14 -132.09 -0.15 0.94 16 28 C -0.14 -0.85 8.80 37.16 0.33 -0.53 16 29 C -0.14 -1.31 7.58 37.16 0.28 -1.03 16 30 H 0.04 0.81 7.00 -51.93 -0.36 0.45 16 31 H 0.07 1.44 7.32 -51.93 -0.38 1.06 16 32 H 0.07 1.54 7.55 -51.93 -0.39 1.15 16 33 H 0.39 9.28 7.85 -40.82 -0.32 8.96 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 36 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.07 0.55 7.49 -51.93 -0.39 0.16 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.12 1.24 8.03 -51.93 -0.42 0.83 16 40 H 0.11 0.72 7.07 -51.93 -0.37 0.36 16 41 H 0.43 3.63 8.96 -40.82 -0.37 3.26 16 42 H 0.08 0.35 7.43 -51.93 -0.39 -0.04 16 43 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 0.95 7.55 -51.93 -0.39 0.56 16 46 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.07 0.69 7.90 -51.93 -0.41 0.28 16 LS Contribution 382.17 15.07 5.76 5.76 Total: -1.00 -33.96 382.17 -7.56 -41.51 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -7.11 Total: 9.13 kcal Atomic # 6 Polarization: 17.79 SS G_CDS: -1.06 Total: 16.73 kcal Atomic # 7 Polarization: -65.21 SS G_CDS: -0.39 Total: -65.61 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: 0.27 Total: -24.19 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.96 -7.56 -41.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987314344.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.176 kcal (2) G-P(sol) polarization free energy of solvation -33.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds