Wall clock time and date at job start Tue Mar 31 2020 21:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.99661 * 2 1 4 4 C 1.54326 * 109.88167 * 238.91242 * 2 1 3 5 5 H 1.09004 * 110.72342 * 100.02709 * 4 2 1 6 6 N 1.46501 * 110.87135 * 336.82163 * 4 2 1 7 7 C 1.36937 * 119.99791 * 96.86836 * 6 4 2 8 8 H 1.07996 * 120.00204 * 359.97438 * 7 6 4 9 9 C 1.38818 * 119.99312 * 180.02562 * 7 6 4 10 10 N 1.31613 * 120.00266 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99541 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47342 * 59.99585 * 11 9 7 13 13 H 1.48492 * 109.47302 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.46964 * 300.00015 * 11 9 7 15 15 C 1.55157 * 102.94114 * 218.38960 * 4 2 1 16 16 C 1.54911 * 101.58094 * 35.49815 * 15 4 2 17 17 N 1.47012 * 109.88341 * 121.09934 * 2 1 3 18 18 C 1.34779 * 125.65049 * 298.62436 * 17 2 1 19 19 O 1.21281 * 119.99900 * 359.71496 * 18 17 2 20 20 C 1.50697 * 120.00084 * 179.71515 * 18 17 2 21 21 N 1.46498 * 109.47041 * 180.02562 * 20 18 17 22 22 C 1.34530 * 126.69081 * 90.02832 * 21 20 18 23 23 O 1.21540 * 123.76874 * 359.95839 * 22 21 20 24 24 N 1.33790 * 112.45758 * 179.97438 * 22 21 20 25 25 C 1.34771 * 111.64522 * 359.97438 * 24 22 21 26 26 O 1.21229 * 127.15842 * 179.97438 * 25 24 22 27 27 C 1.47317 * 126.69124 * 269.70542 * 21 20 18 28 28 C 1.52999 * 110.60135 * 298.56794 * 27 21 20 29 29 C 1.53002 * 110.59472 * 61.51383 * 27 21 20 30 30 H 1.09006 * 109.47245 * 304.35080 * 1 2 3 31 31 H 1.09004 * 109.47434 * 64.34749 * 1 2 3 32 32 H 1.08995 * 109.47142 * 184.35190 * 1 2 3 33 33 H 0.97001 * 119.99571 * 276.86909 * 6 4 2 34 34 H 0.97001 * 119.99992 * 180.02562 * 10 9 7 35 35 H 1.09009 * 110.99923 * 277.42823 * 15 4 2 36 36 H 1.09000 * 111.03953 * 153.59303 * 15 4 2 37 37 H 1.08999 * 110.36605 * 204.15602 * 16 15 4 38 38 H 1.08999 * 110.36368 * 81.83106 * 16 15 4 39 39 H 1.09001 * 109.47387 * 300.00312 * 20 18 17 40 40 H 1.09003 * 109.47303 * 60.00039 * 20 18 17 41 41 H 0.96999 * 124.17952 * 180.02562 * 24 22 21 42 42 H 1.09000 * 109.47292 * 59.99680 * 28 27 21 43 43 H 1.08993 * 109.47276 * 179.97438 * 28 27 21 44 44 H 1.09005 * 109.46977 * 300.00080 * 28 27 21 45 45 H 1.08998 * 109.47289 * 59.99978 * 29 27 21 46 46 H 1.08996 * 109.47207 * 180.02562 * 29 27 21 47 47 H 1.09000 * 109.46865 * 300.00092 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7494 -1.2428 5 1 2.3529 -0.0457 -2.0202 6 7 1.0489 -1.6852 -1.7515 7 6 0.2318 -1.3161 -2.7865 8 1 0.3286 -0.3351 -3.2275 9 6 -0.7217 -2.2027 -3.2680 10 7 -0.8399 -3.3981 -2.7301 11 14 -1.8369 -1.6991 -4.6794 12 1 -1.0120 -1.3770 -5.8714 13 1 -2.7598 -2.8162 -5.0040 14 1 -2.6250 -0.5037 -4.2853 15 6 3.2876 -1.5142 -0.6926 16 6 2.8145 -1.8794 0.7366 17 7 2.0300 -0.7141 1.1838 18 6 1.8038 -0.3646 2.4657 19 8 1.1402 0.6187 2.7181 20 6 2.3753 -1.1957 3.5853 21 7 1.9898 -0.6121 4.8725 22 6 0.8854 -0.8972 5.5859 23 8 0.0440 -1.7013 5.2359 24 7 0.8168 -0.1963 6.7235 25 6 1.8777 0.6222 6.8679 26 8 2.0987 1.3788 7.7889 27 6 2.7392 0.3966 5.6414 28 6 4.1150 -0.1421 6.0387 29 6 2.8780 1.6916 4.8383 30 1 -0.3634 0.5799 0.8485 31 1 -0.3634 0.4449 -0.9264 32 1 -0.3633 -1.0246 0.0780 33 1 0.9618 -2.5662 -1.3550 34 1 -1.5059 -4.0177 -3.0669 35 1 4.1654 -0.8686 -0.6605 36 1 3.4859 -2.4108 -1.2797 37 1 3.6716 -2.0338 1.3920 38 1 2.1886 -2.7715 0.7125 39 1 1.9882 -2.2124 3.5173 40 1 3.4622 -1.2147 3.5055 41 1 0.0932 -0.2689 7.3654 42 1 4.6799 -0.3934 5.1410 43 1 4.6530 0.6178 6.6053 44 1 3.9923 -1.0346 6.6525 45 1 1.8877 2.0855 4.6101 46 1 3.4348 2.4238 5.4230 47 1 3.4108 1.4877 3.9095 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987314344.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:23 Heat of formation + Delta-G solvation = -75.016555 kcal Electronic energy + Delta-G solvation = -31056.220469 eV Core-core repulsion = 26853.776384 eV Total energy + Delta-G solvation = -4202.444085 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.62108 -41.14536 -39.86619 -38.87533 -37.71477 -35.94437 -35.72340 -33.61849 -33.03934 -32.10403 -30.78944 -28.81195 -28.44805 -26.77970 -25.47134 -25.26291 -24.01256 -22.63462 -21.88431 -21.10342 -19.83929 -19.35260 -19.20057 -18.26664 -17.61437 -17.54108 -17.30448 -16.99658 -16.47755 -16.34654 -15.83947 -15.61291 -15.38032 -15.31146 -15.15930 -14.99746 -14.50008 -14.29125 -13.96375 -13.82092 -13.62222 -13.55578 -13.14612 -13.12022 -13.01263 -12.83631 -12.74585 -12.56555 -12.36349 -12.27495 -12.23163 -12.01427 -11.81493 -11.66608 -11.56571 -11.47151 -11.29478 -11.12703 -10.90668 -10.06589 -9.53599 -8.96951 -7.90948 -5.17034 0.45498 1.02090 1.48014 1.49766 1.54719 1.63381 1.81375 1.87342 2.24586 2.57986 2.84591 3.39561 3.49200 3.53609 3.78451 3.80931 3.85466 3.95033 4.12983 4.25067 4.35550 4.45109 4.48180 4.57826 4.59807 4.65577 4.69013 4.75789 4.81094 4.84822 4.86190 4.95398 5.04635 5.09465 5.16460 5.18954 5.24685 5.32605 5.38433 5.51436 5.55452 5.60210 5.87712 6.23985 6.30939 6.67960 6.93971 7.22425 7.38967 8.14014 8.35949 9.31807 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021314 B = 0.002827 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.364013 B = 9901.844818 C =10311.712339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.118 3.882 3 H 0.069 0.931 4 C 0.160 3.840 5 H 0.077 0.923 6 N -0.717 5.717 7 C -0.226 4.226 8 H 0.075 0.925 9 C -0.071 4.071 10 N -0.966 5.966 11 Si 0.959 3.041 12 H -0.276 1.276 13 H -0.301 1.301 14 H -0.286 1.286 15 C -0.130 4.130 16 C 0.097 3.903 17 N -0.603 5.603 18 C 0.498 3.502 19 O -0.572 6.572 20 C 0.138 3.862 21 N -0.593 5.593 22 C 0.702 3.298 23 O -0.582 6.582 24 N -0.674 5.674 25 C 0.538 3.462 26 O -0.487 6.487 27 C 0.122 3.878 28 C -0.140 4.140 29 C -0.133 4.133 30 H 0.027 0.973 31 H 0.048 0.952 32 H 0.030 0.970 33 H 0.375 0.625 34 H 0.248 0.752 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.124 0.876 38 H 0.054 0.946 39 H 0.122 0.878 40 H 0.170 0.830 41 H 0.437 0.563 42 H 0.105 0.895 43 H 0.097 0.903 44 H 0.071 0.929 45 H 0.042 0.958 46 H 0.096 0.904 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.895 5.472 17.413 25.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.012 3.988 3 H 0.087 0.913 4 C 0.049 3.951 5 H 0.095 0.905 6 N -0.355 5.355 7 C -0.358 4.358 8 H 0.093 0.907 9 C -0.263 4.263 10 N -0.617 5.617 11 Si 0.789 3.211 12 H -0.202 1.202 13 H -0.228 1.228 14 H -0.213 1.213 15 C -0.168 4.168 16 C -0.024 4.024 17 N -0.336 5.336 18 C 0.286 3.714 19 O -0.451 6.451 20 C 0.014 3.986 21 N -0.330 5.330 22 C 0.403 3.597 23 O -0.458 6.458 24 N -0.343 5.343 25 C 0.325 3.675 26 O -0.358 6.358 27 C 0.034 3.966 28 C -0.198 4.198 29 C -0.191 4.191 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.207 0.793 34 H 0.057 0.943 35 H 0.126 0.874 36 H 0.103 0.897 37 H 0.142 0.858 38 H 0.073 0.927 39 H 0.140 0.860 40 H 0.187 0.813 41 H 0.281 0.719 42 H 0.124 0.876 43 H 0.115 0.885 44 H 0.090 0.910 45 H 0.061 0.939 46 H 0.114 0.886 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 17.259 6.042 17.591 25.374 hybrid contribution -2.353 -0.221 -0.563 2.430 sum 14.906 5.821 17.027 23.367 Atomic orbital electron populations 1.21551 0.96827 0.99968 0.99153 1.22409 0.93421 0.96228 0.86774 0.91325 1.21507 0.89208 0.92128 0.92262 0.90532 1.42432 1.39321 1.15081 1.38668 1.19476 1.10156 0.98385 1.07778 0.90690 1.25368 1.01798 0.96628 1.02541 1.69771 1.38450 1.07708 1.45746 0.85426 0.78968 0.76332 0.80340 1.20155 1.22793 1.21305 1.23083 0.97372 1.01687 0.94690 1.22562 0.95589 0.87331 0.96963 1.48665 1.51814 1.28792 1.04376 1.21359 0.80791 0.85843 0.83424 1.90679 1.41155 1.29688 1.83621 1.21377 1.04211 0.96427 0.76615 1.47327 1.22007 1.43214 1.20502 1.16006 0.82561 0.80639 0.80516 1.91025 1.43171 1.38508 1.73103 1.44278 1.26465 1.40455 1.23128 1.21021 0.81419 0.77762 0.87304 1.90810 1.73751 1.35631 1.35573 1.21795 0.94870 0.91377 0.88577 1.22050 0.90507 1.02645 1.04577 1.21902 1.02903 0.93836 1.00478 0.95425 0.93336 0.95033 0.79293 0.94342 0.87412 0.89697 0.85838 0.92715 0.86020 0.81314 0.71933 0.87588 0.88471 0.90985 0.93855 0.88570 0.89754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.94 8.07 71.98 0.58 -4.36 16 2 C 0.12 3.94 3.44 45.34 0.16 4.09 16 3 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 4 C 0.16 5.30 3.52 46.18 0.16 5.46 16 5 H 0.08 2.52 8.05 -2.38 -0.02 2.50 16 6 N -0.72 -32.13 3.83 -317.32 -1.22 -33.35 16 7 C -0.23 -11.63 8.60 84.03 0.72 -10.91 16 8 H 0.08 3.73 7.83 -2.91 -0.02 3.71 16 9 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 10 N -0.97 -57.34 13.06 21.65 0.28 -57.06 16 11 Si 0.96 45.48 29.55 68.60 2.03 47.51 16 12 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 13 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 14 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 15 C -0.13 -2.90 6.70 31.99 0.21 -2.69 16 16 C 0.10 1.98 6.62 86.86 0.58 2.56 16 17 N -0.60 -16.26 3.07 -788.07 -2.42 -18.68 16 18 C 0.50 13.54 7.30 87.66 0.64 14.18 16 19 O -0.57 -20.28 13.83 -3.03 -0.04 -20.32 16 20 C 0.14 2.40 5.34 85.63 0.46 2.86 16 21 N -0.59 -11.90 1.99 -798.94 -1.59 -13.49 16 22 C 0.70 18.34 8.68 179.44 1.56 19.90 16 23 O -0.58 -20.38 17.71 -3.84 -0.07 -20.45 16 24 N -0.67 -13.97 5.70 -441.12 -2.52 -16.48 16 25 C 0.54 10.56 7.48 87.94 0.66 11.21 16 26 O -0.49 -11.29 18.02 -2.87 -0.05 -11.34 16 27 C 0.12 1.88 1.14 2.98 0.00 1.89 16 28 C -0.14 -1.01 8.80 71.98 0.63 -0.38 16 29 C -0.13 -2.18 7.58 71.98 0.55 -1.64 16 30 H 0.03 1.19 7.00 -2.38 -0.02 1.17 16 31 H 0.05 2.16 7.32 -2.39 -0.02 2.14 16 32 H 0.03 1.52 7.55 -2.39 -0.02 1.50 16 33 H 0.37 18.35 7.85 -92.71 -0.73 17.63 16 34 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 35 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.12 1.19 7.49 -2.39 -0.02 1.18 16 38 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.12 2.18 8.03 -2.39 -0.02 2.16 16 40 H 0.17 1.04 7.07 -2.39 -0.02 1.02 16 41 H 0.44 7.46 8.96 -92.71 -0.83 6.63 16 42 H 0.11 0.25 7.43 -2.39 -0.02 0.24 16 43 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 45 H 0.04 1.02 7.55 -2.39 -0.02 1.01 16 46 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.08 1.25 7.90 -2.39 -0.02 1.23 16 Total: -1.00 -79.26 382.17 1.23 -78.03 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: -0.55 Total: 26.90 kcal Atomic # 6 Polarization: 31.35 SS G_CDS: 7.37 Total: 38.72 kcal Atomic # 7 Polarization: -131.60 SS G_CDS: -7.46 Total: -139.05 kcal Atomic # 8 Polarization: -51.94 SS G_CDS: -0.16 Total: -52.10 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -79.26 1.23 -78.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987314344.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.010 kcal (2) G-P(sol) polarization free energy of solvation -79.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds