Wall clock time and date at job start Tue Mar 31 2020 21:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.87443 * 2 1 4 4 C 1.54325 * 109.88128 * 121.01569 * 2 1 3 5 5 H 1.08997 * 110.72163 * 215.58982 * 4 2 1 6 6 N 1.46497 * 110.72131 * 338.86112 * 4 2 1 7 7 C 1.36935 * 120.00023 * 199.98015 * 6 4 2 8 8 H 1.07998 * 120.00224 * 359.97438 * 7 6 4 9 9 C 1.38813 * 119.99817 * 180.02562 * 7 6 4 10 10 N 1.31620 * 120.00358 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99999 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47130 * 59.99472 * 11 9 7 13 13 H 1.48496 * 109.47333 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47092 * 300.00199 * 11 9 7 15 15 C 1.55154 * 102.94303 * 97.22539 * 4 2 1 16 16 C 1.54908 * 101.58289 * 35.49976 * 15 4 2 17 17 N 1.47290 * 109.85675 * 238.85037 * 2 1 3 18 18 C 1.34774 * 125.79121 * 59.50355 * 17 2 1 19 19 O 1.21280 * 120.00501 * 0.02562 * 18 17 2 20 20 C 1.50698 * 119.99753 * 180.02562 * 18 17 2 21 21 N 1.46503 * 109.47151 * 180.02562 * 20 18 17 22 22 C 1.34519 * 126.69406 * 90.02141 * 21 20 18 23 23 O 1.21545 * 123.77185 * 359.96125 * 22 21 20 24 24 N 1.33796 * 112.46023 * 179.97438 * 22 21 20 25 25 C 1.34760 * 111.64378 * 359.97438 * 24 22 21 26 26 O 1.21233 * 127.16176 * 180.02562 * 25 24 22 27 27 C 1.47315 * 126.68850 * 269.70459 * 21 20 18 28 28 C 1.53001 * 110.60197 * 298.56735 * 27 21 20 29 29 C 1.53003 * 110.59568 * 61.50816 * 27 21 20 30 30 H 1.09005 * 109.47227 * 298.98333 * 1 2 3 31 31 H 1.09002 * 109.47214 * 58.98361 * 1 2 3 32 32 H 1.09004 * 109.46879 * 178.98623 * 1 2 3 33 33 H 0.97001 * 120.00178 * 19.97534 * 6 4 2 34 34 H 0.97000 * 120.00067 * 180.02562 * 10 9 7 35 35 H 1.09008 * 111.00345 * 277.42446 * 15 4 2 36 36 H 1.09000 * 111.03743 * 153.59413 * 15 4 2 37 37 H 1.09002 * 110.36632 * 81.83114 * 16 15 4 38 38 H 1.08995 * 110.36781 * 204.04351 * 16 15 4 39 39 H 1.09001 * 109.47204 * 299.99785 * 20 18 17 40 40 H 1.09000 * 109.47543 * 59.99762 * 20 18 17 41 41 H 0.96997 * 124.17727 * 180.02562 * 24 22 21 42 42 H 1.08998 * 109.47040 * 59.99179 * 28 27 21 43 43 H 1.08994 * 109.47443 * 179.97438 * 28 27 21 44 44 H 1.09001 * 109.46572 * 299.99745 * 28 27 21 45 45 H 1.09004 * 109.47253 * 60.00050 * 29 27 21 46 46 H 1.08999 * 109.46957 * 179.97438 * 29 27 21 47 47 H 1.08999 * 109.47243 * 300.00150 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0548 -0.7478 1.2438 5 1 2.9656 -0.2809 1.6187 6 7 1.0293 -0.7994 2.2886 7 6 1.3878 -1.0366 3.5888 8 1 2.4265 -1.1860 3.8439 9 6 0.4159 -1.0860 4.5787 10 7 -0.8501 -0.9045 4.2678 11 14 0.9048 -1.4102 6.3522 12 1 1.8322 -0.3456 6.8126 13 1 -0.3089 -1.4128 7.2078 14 1 1.5802 -2.7295 6.4462 15 6 2.3519 -2.1685 0.6955 16 6 2.8568 -1.8509 -0.7341 17 7 2.0303 -0.7166 -1.1856 18 6 1.7762 -0.3914 -2.4686 19 8 1.0797 0.5679 -2.7246 20 6 2.3576 -1.2198 -3.5852 21 7 1.9382 -0.6647 -4.8745 22 6 2.5830 0.2707 -5.5948 23 8 3.6280 0.7871 -5.2506 24 7 1.9452 0.5693 -6.7325 25 6 0.8121 -0.1471 -6.8698 26 8 0.0234 -0.1010 -7.7893 27 6 0.7315 -1.0267 -5.6379 28 6 0.7643 -2.5061 -6.0270 29 6 -0.5302 -0.7082 -4.8332 30 1 -0.3634 0.4980 0.8990 31 1 -0.3634 0.5295 -0.8807 32 1 -0.3633 -1.0276 -0.0182 33 1 0.0963 -0.6655 2.0595 34 1 -1.5291 -0.9386 4.9596 35 1 1.4451 -2.7728 0.6643 36 1 3.1267 -2.6607 1.2832 37 1 3.9092 -1.5678 -0.7106 38 1 2.7106 -2.7106 -1.3879 39 1 3.4456 -1.2047 -3.5202 40 1 2.0027 -2.2467 -3.4986 41 1 2.2599 1.2204 -7.3789 42 1 0.8090 -3.1178 -5.1259 43 1 -0.1357 -2.7539 -6.5897 44 1 1.6429 -2.7006 -6.6421 45 1 -0.5598 0.3585 -4.6109 46 1 -1.4107 -0.9824 -5.4144 47 1 -0.5191 -1.2734 -3.9012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987314345.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:28 Heat of formation + Delta-G solvation = -46.278307 kcal Electronic energy + Delta-G solvation = -30774.530456 eV Core-core repulsion = 26573.332554 eV Total energy + Delta-G solvation = -4201.197902 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.80775 -40.08019 -38.94875 -37.71365 -36.78762 -35.10707 -34.26501 -32.69804 -31.69573 -30.77790 -29.41340 -27.90275 -27.83699 -25.28573 -24.68245 -23.65452 -22.86698 -21.78799 -21.12505 -19.70445 -18.75198 -18.39659 -17.65857 -17.28930 -16.78313 -16.57002 -16.21768 -15.95083 -15.58041 -15.02057 -14.87252 -14.62566 -14.47168 -14.17393 -13.82054 -13.64532 -13.33782 -13.18549 -12.94910 -12.82817 -12.59592 -12.54230 -12.20745 -12.13664 -11.93001 -11.79381 -11.58805 -11.28275 -11.10858 -11.01700 -10.85528 -10.66579 -10.51636 -10.45760 -10.31374 -10.12548 -10.02226 -9.71919 -9.15354 -8.99223 -8.49450 -7.07629 -5.86074 -3.16146 1.28239 1.80438 2.56801 2.63633 2.70827 3.14619 3.38545 3.43718 3.44485 3.60400 4.13976 4.31721 4.46065 4.51405 4.53934 4.86756 4.95090 5.03577 5.07945 5.16297 5.22808 5.28856 5.38363 5.47790 5.48307 5.51514 5.53366 5.57386 5.68955 5.74550 5.90441 5.94399 6.00004 6.05406 6.15372 6.24917 6.49131 6.49993 6.63111 6.70527 6.76120 6.92034 7.02888 7.61708 7.64016 7.80955 8.20404 8.32525 9.44139 9.98641 10.33365 11.36258 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.026226 B = 0.002507 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.400477 B =11165.269493 C =11473.156302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.130 3.870 3 H 0.071 0.929 4 C 0.174 3.826 5 H 0.063 0.937 6 N -0.717 5.717 7 C -0.246 4.246 8 H 0.071 0.929 9 C -0.010 4.010 10 N -0.931 5.931 11 Si 0.909 3.091 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.285 1.285 15 C -0.153 4.153 16 C 0.094 3.906 17 N -0.607 5.607 18 C 0.507 3.493 19 O -0.528 6.528 20 C 0.136 3.864 21 N -0.598 5.598 22 C 0.709 3.291 23 O -0.539 6.539 24 N -0.679 5.679 25 C 0.538 3.462 26 O -0.467 6.467 27 C 0.120 3.880 28 C -0.146 4.146 29 C -0.141 4.141 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.391 0.609 34 H 0.257 0.743 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.431 0.569 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.067 0.933 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.580 -4.948 -21.437 22.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.027 3.973 3 H 0.089 0.911 4 C 0.062 3.938 5 H 0.081 0.919 6 N -0.361 5.361 7 C -0.377 4.377 8 H 0.089 0.911 9 C -0.206 4.206 10 N -0.579 5.579 11 Si 0.739 3.261 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.194 4.194 16 C -0.030 4.030 17 N -0.342 5.342 18 C 0.293 3.707 19 O -0.405 6.405 20 C 0.011 3.989 21 N -0.336 5.336 22 C 0.410 3.590 23 O -0.412 6.412 24 N -0.349 5.349 25 C 0.323 3.677 26 O -0.336 6.336 27 C 0.031 3.969 28 C -0.204 4.204 29 C -0.199 4.199 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.229 0.771 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.273 0.727 42 H 0.099 0.901 43 H 0.105 0.895 44 H 0.086 0.914 45 H 0.096 0.904 46 H 0.097 0.903 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.363 -4.240 -21.589 22.646 hybrid contribution 0.175 0.139 0.754 0.787 sum 5.538 -4.101 -20.835 21.945 Atomic orbital electron populations 1.21991 0.94498 1.02325 1.02700 1.21883 0.95375 0.95790 0.84295 0.91051 1.21172 0.93270 0.92043 0.87363 0.91908 1.42668 1.05175 1.85295 1.02937 1.19187 0.93022 1.41478 0.84007 0.91101 1.24754 0.95295 1.02395 0.98153 1.69643 0.99352 1.56153 1.32740 0.86253 0.77043 0.78075 0.84686 1.21197 1.21683 1.21209 1.23549 1.01718 1.01364 0.92780 1.22450 0.94801 0.88206 0.97513 1.48665 1.50154 1.30565 1.04800 1.20557 0.81650 0.85893 0.82646 1.90696 1.38386 1.28498 1.82893 1.21122 1.01959 0.97136 0.78684 1.47177 1.24217 1.41955 1.20284 1.15738 0.83332 0.79976 0.79949 1.91031 1.22112 1.55728 1.72367 1.44316 1.24970 1.42132 1.23442 1.20732 0.79995 0.79886 0.87085 1.90824 1.42492 1.65446 1.34849 1.21583 0.88582 0.96856 0.89886 1.21990 1.04039 0.91110 1.03224 1.21970 0.93523 1.04514 0.99862 0.90214 0.92224 0.92541 0.77084 0.93290 0.90610 0.90505 0.91334 0.91344 0.86321 0.86633 0.72653 0.90138 0.89534 0.91405 0.90381 0.90306 0.90457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 7.95 37.16 0.30 -2.46 16 2 C 0.13 2.15 3.49 -66.80 -0.23 1.92 16 3 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 4 C 0.17 3.12 3.46 -66.10 -0.23 2.90 16 5 H 0.06 1.15 8.12 -51.93 -0.42 0.72 16 6 N -0.72 -16.61 5.02 -51.66 -0.26 -16.87 16 7 C -0.25 -6.40 9.98 -15.06 -0.15 -6.55 16 8 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 9 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 10 N -0.93 -26.95 13.06 55.49 0.72 -26.22 16 11 Si 0.91 21.48 29.55 -169.99 -5.02 16.45 16 12 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 15 C -0.15 -2.23 6.77 -24.58 -0.17 -2.40 16 16 C 0.09 1.02 6.68 -2.53 -0.02 1.00 16 17 N -0.61 -8.19 3.09 -162.82 -0.50 -8.69 16 18 C 0.51 6.74 7.30 -10.99 -0.08 6.66 16 19 O -0.53 -8.80 13.66 5.56 0.08 -8.72 16 20 C 0.14 1.25 5.33 -5.19 -0.03 1.22 16 21 N -0.60 -6.02 1.99 -166.44 -0.33 -6.35 16 22 C 0.71 8.43 8.68 -88.02 -0.76 7.67 16 23 O -0.54 -8.21 17.71 5.33 0.09 -8.11 16 24 N -0.68 -6.46 5.70 -15.79 -0.09 -6.55 16 25 C 0.54 5.30 7.48 -10.56 -0.08 5.22 16 26 O -0.47 -5.51 18.02 5.60 0.10 -5.41 16 27 C 0.12 1.03 1.14 -132.09 -0.15 0.88 16 28 C -0.15 -0.83 8.80 37.16 0.33 -0.50 16 29 C -0.14 -1.32 7.58 37.16 0.28 -1.04 16 30 H 0.08 1.57 6.67 -51.93 -0.35 1.22 16 31 H 0.06 1.04 6.78 -51.93 -0.35 0.69 16 32 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 33 H 0.39 9.60 4.92 -40.82 -0.20 9.40 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.08 1.22 8.14 -51.92 -0.42 0.79 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.54 7.47 -51.93 -0.39 0.15 16 39 H 0.12 0.99 8.03 -51.93 -0.42 0.57 16 40 H 0.12 0.67 7.06 -51.93 -0.37 0.31 16 41 H 0.43 3.17 8.96 -40.82 -0.37 2.80 16 42 H 0.08 0.35 7.43 -51.93 -0.39 -0.03 16 43 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.08 0.93 7.55 -51.93 -0.39 0.54 16 46 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.08 0.74 7.90 -51.93 -0.41 0.33 16 LS Contribution 381.40 15.07 5.75 5.75 Total: -1.00 -33.86 381.40 -7.52 -41.39 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -6.97 Total: 9.16 kcal Atomic # 6 Polarization: 15.25 SS G_CDS: -1.09 Total: 14.17 kcal Atomic # 7 Polarization: -64.22 SS G_CDS: -0.46 Total: -64.68 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: 0.27 Total: -22.24 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.86 -7.52 -41.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987314345.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.889 kcal (2) G-P(sol) polarization free energy of solvation -33.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds