Wall clock time and date at job start Tue Mar 31 2020 21:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.87443 * 2 1 4 4 C 1.54325 * 109.88128 * 121.01569 * 2 1 3 5 5 H 1.08997 * 110.72163 * 215.58982 * 4 2 1 6 6 N 1.46497 * 110.72131 * 338.86112 * 4 2 1 7 7 C 1.36935 * 120.00023 * 199.98015 * 6 4 2 8 8 H 1.07998 * 120.00224 * 359.97438 * 7 6 4 9 9 C 1.38813 * 119.99817 * 180.02562 * 7 6 4 10 10 N 1.31620 * 120.00358 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99999 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47130 * 59.99472 * 11 9 7 13 13 H 1.48496 * 109.47333 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47092 * 300.00199 * 11 9 7 15 15 C 1.55154 * 102.94303 * 97.22539 * 4 2 1 16 16 C 1.54908 * 101.58289 * 35.49976 * 15 4 2 17 17 N 1.47290 * 109.85675 * 238.85037 * 2 1 3 18 18 C 1.34774 * 125.79121 * 59.50355 * 17 2 1 19 19 O 1.21280 * 120.00501 * 0.02562 * 18 17 2 20 20 C 1.50698 * 119.99753 * 180.02562 * 18 17 2 21 21 N 1.46503 * 109.47151 * 180.02562 * 20 18 17 22 22 C 1.34519 * 126.69406 * 90.02141 * 21 20 18 23 23 O 1.21545 * 123.77185 * 359.96125 * 22 21 20 24 24 N 1.33796 * 112.46023 * 179.97438 * 22 21 20 25 25 C 1.34760 * 111.64378 * 359.97438 * 24 22 21 26 26 O 1.21233 * 127.16176 * 180.02562 * 25 24 22 27 27 C 1.47315 * 126.68850 * 269.70459 * 21 20 18 28 28 C 1.53001 * 110.60197 * 298.56735 * 27 21 20 29 29 C 1.53003 * 110.59568 * 61.50816 * 27 21 20 30 30 H 1.09005 * 109.47227 * 298.98333 * 1 2 3 31 31 H 1.09002 * 109.47214 * 58.98361 * 1 2 3 32 32 H 1.09004 * 109.46879 * 178.98623 * 1 2 3 33 33 H 0.97001 * 120.00178 * 19.97534 * 6 4 2 34 34 H 0.97000 * 120.00067 * 180.02562 * 10 9 7 35 35 H 1.09008 * 111.00345 * 277.42446 * 15 4 2 36 36 H 1.09000 * 111.03743 * 153.59413 * 15 4 2 37 37 H 1.09002 * 110.36632 * 81.83114 * 16 15 4 38 38 H 1.08995 * 110.36781 * 204.04351 * 16 15 4 39 39 H 1.09001 * 109.47204 * 299.99785 * 20 18 17 40 40 H 1.09000 * 109.47543 * 59.99762 * 20 18 17 41 41 H 0.96997 * 124.17727 * 180.02562 * 24 22 21 42 42 H 1.08998 * 109.47040 * 59.99179 * 28 27 21 43 43 H 1.08994 * 109.47443 * 179.97438 * 28 27 21 44 44 H 1.09001 * 109.46572 * 299.99745 * 28 27 21 45 45 H 1.09004 * 109.47253 * 60.00050 * 29 27 21 46 46 H 1.08999 * 109.46957 * 179.97438 * 29 27 21 47 47 H 1.08999 * 109.47243 * 300.00150 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0548 -0.7478 1.2438 5 1 2.9656 -0.2809 1.6187 6 7 1.0293 -0.7994 2.2886 7 6 1.3878 -1.0366 3.5888 8 1 2.4265 -1.1860 3.8439 9 6 0.4159 -1.0860 4.5787 10 7 -0.8501 -0.9045 4.2678 11 14 0.9048 -1.4102 6.3522 12 1 1.8322 -0.3456 6.8126 13 1 -0.3089 -1.4128 7.2078 14 1 1.5802 -2.7295 6.4462 15 6 2.3519 -2.1685 0.6955 16 6 2.8568 -1.8509 -0.7341 17 7 2.0303 -0.7166 -1.1856 18 6 1.7762 -0.3914 -2.4686 19 8 1.0797 0.5679 -2.7246 20 6 2.3576 -1.2198 -3.5852 21 7 1.9382 -0.6647 -4.8745 22 6 2.5830 0.2707 -5.5948 23 8 3.6280 0.7871 -5.2506 24 7 1.9452 0.5693 -6.7325 25 6 0.8121 -0.1471 -6.8698 26 8 0.0234 -0.1010 -7.7893 27 6 0.7315 -1.0267 -5.6379 28 6 0.7643 -2.5061 -6.0270 29 6 -0.5302 -0.7082 -4.8332 30 1 -0.3634 0.4980 0.8990 31 1 -0.3634 0.5295 -0.8807 32 1 -0.3633 -1.0276 -0.0182 33 1 0.0963 -0.6655 2.0595 34 1 -1.5291 -0.9386 4.9596 35 1 1.4451 -2.7728 0.6643 36 1 3.1267 -2.6607 1.2832 37 1 3.9092 -1.5678 -0.7106 38 1 2.7106 -2.7106 -1.3879 39 1 3.4456 -1.2047 -3.5202 40 1 2.0027 -2.2467 -3.4986 41 1 2.2599 1.2204 -7.3789 42 1 0.8090 -3.1178 -5.1259 43 1 -0.1357 -2.7539 -6.5897 44 1 1.6429 -2.7006 -6.6421 45 1 -0.5598 0.3585 -4.6109 46 1 -1.4107 -0.9824 -5.4144 47 1 -0.5191 -1.2734 -3.9012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987314345.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:27 Heat of formation + Delta-G solvation = -71.195488 kcal Electronic energy + Delta-G solvation = -30775.610946 eV Core-core repulsion = 26573.332554 eV Total energy + Delta-G solvation = -4202.278392 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.61769 -41.21090 -39.85977 -38.90773 -37.70799 -35.94313 -35.89228 -33.71978 -33.10895 -32.04928 -30.86388 -28.86166 -28.47008 -26.74802 -25.52050 -25.32065 -24.02265 -22.72892 -21.88441 -20.91844 -19.93312 -19.41520 -19.20399 -18.39370 -17.62549 -17.49567 -17.16838 -16.93598 -16.77671 -16.33306 -15.94596 -15.83305 -15.55844 -15.32416 -15.24494 -14.66306 -14.51292 -14.21664 -13.87887 -13.71979 -13.56726 -13.52865 -13.22502 -13.15203 -13.02248 -12.89461 -12.83940 -12.75537 -12.57773 -12.48525 -12.10833 -12.00938 -11.98688 -11.57535 -11.54606 -11.48886 -11.29401 -11.12025 -10.87917 -10.07668 -9.61983 -8.98095 -7.91832 -5.20254 0.45974 1.02233 1.50799 1.52982 1.58788 1.61914 1.76712 1.87061 2.14967 2.59640 2.85177 3.37638 3.47655 3.49022 3.76101 3.82605 3.84357 3.92427 3.99568 4.22512 4.27706 4.41986 4.45124 4.47798 4.56876 4.61499 4.63408 4.69938 4.74112 4.82352 4.84902 4.91224 4.97519 5.09065 5.09968 5.16073 5.23121 5.26413 5.31963 5.38221 5.54020 5.59108 5.87969 6.24095 6.30141 6.60613 6.94975 7.16986 7.37649 8.12230 8.35119 9.31599 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.026226 B = 0.002507 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.400477 B =11165.269493 C =11473.156302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.137 3.863 3 H 0.054 0.946 4 C 0.163 3.837 5 H 0.060 0.940 6 N -0.733 5.733 7 C -0.238 4.238 8 H 0.080 0.920 9 C -0.075 4.075 10 N -0.971 5.971 11 Si 0.971 3.029 12 H -0.281 1.281 13 H -0.301 1.301 14 H -0.275 1.275 15 C -0.143 4.143 16 C 0.100 3.900 17 N -0.606 5.606 18 C 0.501 3.499 19 O -0.569 6.569 20 C 0.139 3.861 21 N -0.594 5.594 22 C 0.706 3.294 23 O -0.577 6.577 24 N -0.673 5.673 25 C 0.539 3.461 26 O -0.488 6.488 27 C 0.122 3.878 28 C -0.141 4.141 29 C -0.135 4.135 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.381 0.619 34 H 0.250 0.750 35 H 0.061 0.939 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.115 0.885 39 H 0.137 0.863 40 H 0.163 0.837 41 H 0.438 0.562 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.075 0.925 45 H 0.045 0.955 46 H 0.092 0.908 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.388 -7.464 -22.735 25.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.032 3.968 3 H 0.073 0.927 4 C 0.053 3.947 5 H 0.078 0.922 6 N -0.376 5.376 7 C -0.369 4.369 8 H 0.098 0.902 9 C -0.267 4.267 10 N -0.621 5.621 11 Si 0.800 3.200 12 H -0.207 1.207 13 H -0.227 1.227 14 H -0.201 1.201 15 C -0.184 4.184 16 C -0.022 4.022 17 N -0.341 5.341 18 C 0.289 3.711 19 O -0.448 6.448 20 C 0.014 3.986 21 N -0.331 5.331 22 C 0.407 3.593 23 O -0.453 6.453 24 N -0.342 5.342 25 C 0.325 3.675 26 O -0.358 6.358 27 C 0.034 3.966 28 C -0.199 4.199 29 C -0.193 4.193 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.217 0.783 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.133 0.867 39 H 0.154 0.846 40 H 0.180 0.820 41 H 0.282 0.718 42 H 0.121 0.879 43 H 0.112 0.888 44 H 0.094 0.906 45 H 0.064 0.936 46 H 0.111 0.889 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.228 -6.791 -22.934 24.986 hybrid contribution -0.367 1.004 1.083 1.522 sum 6.860 -5.787 -21.851 23.622 Atomic orbital electron populations 1.21779 0.95535 1.01566 1.00962 1.21536 0.94362 0.95328 0.85546 0.92749 1.21388 0.91807 0.94753 0.86745 0.92154 1.42845 1.05814 1.85559 1.03356 1.19598 0.93245 1.38867 0.85225 0.90198 1.25516 0.95398 1.03847 1.01933 1.69806 1.00279 1.58707 1.33338 0.85253 0.76232 0.78295 0.80204 1.20740 1.22738 1.20067 1.23334 1.01578 0.98139 0.95326 1.22633 0.95162 0.88732 0.95623 1.48674 1.50359 1.30949 1.04082 1.21424 0.80860 0.85728 0.83091 1.90696 1.40236 1.30440 1.83436 1.21396 1.02815 0.98068 0.76287 1.47316 1.24186 1.41230 1.20346 1.15921 0.83067 0.79952 0.80384 1.91003 1.23845 1.57107 1.73345 1.44261 1.24767 1.42097 1.23119 1.20957 0.79512 0.79732 0.87250 1.90818 1.43044 1.66109 1.35854 1.21743 0.87519 0.98650 0.88738 1.22043 1.04861 0.88452 1.04518 1.21904 0.94671 1.02421 1.00333 0.93129 0.92533 0.92760 0.78305 0.94141 0.92049 0.89557 0.89072 0.86667 0.84556 0.81994 0.71806 0.87929 0.88787 0.90594 0.93557 0.88883 0.90266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.07 7.95 71.98 0.57 -4.50 16 2 C 0.14 4.52 3.49 45.29 0.16 4.67 16 3 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 4 C 0.16 5.76 3.46 46.18 0.16 5.92 16 5 H 0.06 2.16 8.12 -2.39 -0.02 2.14 16 6 N -0.73 -34.39 5.02 -317.34 -1.59 -35.98 16 7 C -0.24 -12.38 9.98 84.03 0.84 -11.54 16 8 H 0.08 3.93 7.83 -2.91 -0.02 3.90 16 9 C -0.07 -4.12 5.50 84.86 0.47 -3.66 16 10 N -0.97 -57.76 13.06 21.65 0.28 -57.48 16 11 Si 0.97 44.51 29.55 68.60 2.03 46.54 16 12 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 13 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 14 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 15 C -0.14 -3.80 6.77 31.98 0.22 -3.59 16 16 C 0.10 1.74 6.68 86.85 0.58 2.32 16 17 N -0.61 -14.90 3.09 -787.43 -2.43 -17.33 16 18 C 0.50 12.18 7.30 87.66 0.64 12.82 16 19 O -0.57 -18.69 13.66 -3.03 -0.04 -18.74 16 20 C 0.14 1.98 5.33 85.63 0.46 2.43 16 21 N -0.59 -10.39 1.99 -798.93 -1.59 -11.98 16 22 C 0.71 15.80 8.68 179.44 1.56 17.36 16 23 O -0.58 -17.02 17.71 -3.86 -0.07 -17.09 16 24 N -0.67 -12.18 5.70 -441.12 -2.52 -14.70 16 25 C 0.54 9.89 7.48 87.94 0.66 10.55 16 26 O -0.49 -10.99 18.02 -2.88 -0.05 -11.04 16 27 C 0.12 1.81 1.14 2.98 0.00 1.81 16 28 C -0.14 -1.04 8.80 71.98 0.63 -0.41 16 29 C -0.14 -2.34 7.58 71.98 0.55 -1.79 16 30 H 0.05 2.11 6.67 -2.38 -0.02 2.09 16 31 H 0.06 2.05 6.78 -2.39 -0.02 2.03 16 32 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 33 H 0.38 19.34 4.92 -92.71 -0.46 18.88 16 34 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 35 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 36 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.12 1.04 7.47 -2.39 -0.02 1.02 16 39 H 0.14 1.61 8.03 -2.39 -0.02 1.59 16 40 H 0.16 0.83 7.06 -2.39 -0.02 0.82 16 41 H 0.44 6.24 8.96 -92.71 -0.83 5.41 16 42 H 0.10 0.34 7.43 -2.39 -0.02 0.32 16 43 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.05 1.10 7.55 -2.39 -0.02 1.09 16 46 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.08 1.34 7.90 -2.39 -0.02 1.32 16 Total: -1.00 -77.29 381.40 1.23 -76.06 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: -0.28 Total: 29.34 kcal Atomic # 6 Polarization: 24.92 SS G_CDS: 7.49 Total: 32.41 kcal Atomic # 7 Polarization: -129.63 SS G_CDS: -7.85 Total: -137.47 kcal Atomic # 8 Polarization: -46.71 SS G_CDS: -0.16 Total: -46.87 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -77.29 1.23 -76.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987314345.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.862 kcal (2) G-P(sol) polarization free energy of solvation -77.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds