Wall clock time and date at job start Tue Mar 31 2020 21:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.00268 * 2 1 4 4 C 1.54315 * 109.77369 * 121.15467 * 2 1 3 5 5 H 1.09008 * 110.92577 * 23.47064 * 4 2 1 6 6 N 1.46494 * 110.74748 * 260.21506 * 4 2 1 7 7 C 1.36932 * 120.00654 * 160.10741 * 6 4 2 8 8 H 1.08002 * 119.99564 * 359.97438 * 7 6 4 9 9 C 1.38812 * 120.00584 * 180.02562 * 7 6 4 10 10 N 1.31618 * 119.99495 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00247 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47423 * 59.99626 * 11 9 7 13 13 H 1.48501 * 109.46981 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47014 * 299.99474 * 11 9 7 15 15 C 1.55161 * 102.86451 * 141.87857 * 4 2 1 16 16 C 1.54903 * 101.58203 * 324.30825 * 15 4 2 17 17 N 1.47020 * 109.87975 * 238.90178 * 2 1 3 18 18 C 1.34776 * 125.64897 * 61.68467 * 17 2 1 19 19 O 1.21277 * 120.00063 * 359.71164 * 18 17 2 20 20 C 1.50706 * 119.99956 * 179.71422 * 18 17 2 21 21 N 1.46497 * 109.46648 * 179.97438 * 20 18 17 22 22 C 1.34526 * 126.68962 * 269.97327 * 21 20 18 23 23 O 1.21537 * 123.77256 * 0.04280 * 22 21 20 24 24 N 1.33796 * 112.45867 * 179.77420 * 22 21 20 25 25 C 1.34772 * 111.64406 * 0.43741 * 24 22 21 26 26 O 1.21233 * 127.16267 * 179.85831 * 25 24 22 27 27 C 1.47308 * 126.69176 * 90.00592 * 21 20 18 28 28 C 1.53005 * 110.60223 * 61.44342 * 27 21 20 29 29 C 1.53006 * 110.72800 * 298.56317 * 27 21 20 30 30 H 1.08993 * 109.47734 * 179.64295 * 1 2 3 31 31 H 1.09000 * 109.47050 * 299.64888 * 1 2 3 32 32 H 1.09005 * 109.46883 * 59.63923 * 1 2 3 33 33 H 0.97003 * 119.99822 * 340.10695 * 6 4 2 34 34 H 0.97005 * 120.00029 * 180.02562 * 10 9 7 35 35 H 1.09001 * 111.00409 * 206.23069 * 15 4 2 36 36 H 1.08997 * 110.99867 * 82.38103 * 15 4 2 37 37 H 1.08998 * 110.36802 * 278.16634 * 16 15 4 38 38 H 1.09003 * 110.36913 * 155.84743 * 16 15 4 39 39 H 1.08998 * 109.47031 * 59.99866 * 20 18 17 40 40 H 1.09000 * 109.47031 * 299.99785 * 20 18 17 41 41 H 0.96993 * 124.18333 * 180.30845 * 24 22 21 42 42 H 1.08995 * 109.47074 * 175.62604 * 28 27 21 43 43 H 1.08994 * 109.47141 * 295.63081 * 28 27 21 44 44 H 1.09000 * 109.46802 * 55.63088 * 28 27 21 45 45 H 1.09001 * 109.47170 * 304.29655 * 29 27 21 46 46 H 1.09005 * 109.47238 * 64.29680 * 29 27 21 47 47 H 1.09003 * 109.47180 * 184.29592 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0520 -0.7513 1.2427 5 1 1.3049 -1.4513 1.6168 6 7 2.4467 0.1921 2.2917 7 6 2.5466 -0.2303 3.5904 8 1 2.3340 -1.2590 3.8414 9 6 2.9201 0.6638 4.5844 10 7 3.1786 1.9175 4.2784 11 14 3.0570 0.0873 6.3558 12 1 4.0700 -0.9947 6.4474 13 1 3.4696 1.2252 7.2162 14 1 1.7408 -0.4271 6.8121 15 6 3.2888 -1.5103 0.6933 16 6 2.8190 -1.8764 -0.7367 17 7 2.0299 -0.7141 -1.1839 18 6 1.8085 -0.3613 -2.4657 19 8 1.1413 0.6195 -2.7181 20 6 2.3900 -1.1856 -3.5853 21 7 2.0082 -0.5993 -4.8724 22 6 0.9090 -0.8874 -5.5924 23 8 0.0698 -1.6970 -5.2496 24 7 0.8398 -0.1790 -6.7253 25 6 1.8996 0.6419 -6.8638 26 8 2.1215 1.4031 -7.7809 27 6 2.7534 0.4202 -5.6309 28 6 4.1369 -0.1036 -6.0213 29 6 2.8775 1.7133 -4.8225 30 1 -0.3634 -1.0275 -0.0064 31 1 -0.3633 0.5084 0.8931 32 1 -0.3633 0.5195 -0.8868 33 1 2.6373 1.1162 2.0662 34 1 3.4400 2.5423 4.9729 35 1 3.4895 -2.4067 1.2801 36 1 4.1637 -0.8611 0.6629 37 1 2.1970 -2.7712 -0.7142 38 1 3.6775 -2.0266 -1.3913 39 1 2.0078 -2.2044 -3.5228 40 1 3.4766 -1.1993 -3.4999 41 1 0.1171 -0.2489 -7.3685 42 1 4.6413 0.6333 -6.6462 43 1 4.7256 -0.2807 -5.1212 44 1 4.0294 -1.0365 -6.5746 45 1 1.8847 2.0577 -4.5331 46 1 3.4725 1.5272 -3.9284 47 1 3.3639 2.4764 -5.4302 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987314346.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:32 Heat of formation + Delta-G solvation = -53.769457 kcal Electronic energy + Delta-G solvation = -30652.442017 eV Core-core repulsion = 26450.919275 eV Total energy + Delta-G solvation = -4201.522742 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.80618 -40.06653 -38.94681 -37.65965 -36.77896 -35.10889 -34.20304 -32.72074 -31.67118 -30.96742 -29.49632 -27.94976 -27.86590 -25.26503 -24.68426 -23.27574 -22.92044 -21.63750 -21.11876 -20.15048 -19.00085 -18.38182 -17.44592 -17.22041 -16.78305 -16.58584 -16.25413 -16.06395 -15.54870 -14.95931 -14.81967 -14.65869 -14.42199 -14.07384 -13.71437 -13.54459 -13.44495 -13.13279 -13.00824 -12.88399 -12.72398 -12.59209 -12.28156 -12.15669 -11.92086 -11.82772 -11.67466 -11.21343 -11.11278 -11.08033 -10.87627 -10.66731 -10.63997 -10.46279 -10.32886 -10.18463 -10.03169 -9.78517 -9.17242 -8.98620 -8.49986 -7.08508 -5.86125 -3.16822 1.28007 1.80283 2.56526 2.63439 2.70740 3.13991 3.38340 3.43441 3.44288 3.60310 4.14280 4.31691 4.45896 4.50857 4.54086 4.87258 4.94138 5.03949 5.08349 5.16208 5.21875 5.27322 5.38751 5.42182 5.47878 5.51262 5.53721 5.60240 5.69036 5.72480 5.85646 5.94149 5.97727 6.04155 6.07192 6.24143 6.39822 6.52116 6.57522 6.65885 6.70488 6.86243 7.02810 7.60639 7.63133 7.80823 8.19643 8.31242 9.42707 9.96663 10.31178 11.35922 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.024440 B = 0.002494 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.404405 B =11222.745126 C =11457.914147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.130 3.870 3 H 0.078 0.922 4 C 0.176 3.824 5 H 0.065 0.935 6 N -0.715 5.715 7 C -0.245 4.245 8 H 0.072 0.928 9 C -0.009 4.009 10 N -0.930 5.930 11 Si 0.909 3.091 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.285 1.285 15 C -0.155 4.155 16 C 0.094 3.906 17 N -0.606 5.606 18 C 0.506 3.494 19 O -0.529 6.529 20 C 0.137 3.863 21 N -0.598 5.598 22 C 0.709 3.291 23 O -0.539 6.539 24 N -0.679 5.679 25 C 0.538 3.462 26 O -0.467 6.467 27 C 0.120 3.880 28 C -0.146 4.146 29 C -0.143 4.143 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.386 0.614 34 H 0.257 0.743 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.431 0.569 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.067 0.933 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.184 -7.319 -21.447 22.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.026 3.974 3 H 0.096 0.904 4 C 0.064 3.936 5 H 0.083 0.917 6 N -0.355 5.355 7 C -0.376 4.376 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.197 4.197 16 C -0.029 4.029 17 N -0.341 5.341 18 C 0.292 3.708 19 O -0.405 6.405 20 C 0.011 3.989 21 N -0.336 5.336 22 C 0.410 3.590 23 O -0.412 6.412 24 N -0.349 5.349 25 C 0.323 3.677 26 O -0.336 6.336 27 C 0.031 3.969 28 C -0.204 4.204 29 C -0.201 4.201 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.220 0.780 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.273 0.727 42 H 0.104 0.896 43 H 0.099 0.901 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.095 0.905 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.590 -6.889 -21.595 22.723 hybrid contribution -0.178 -0.074 0.739 0.763 sum 1.411 -6.963 -20.857 22.033 Atomic orbital electron populations 1.22037 0.94837 1.01688 1.02661 1.21896 0.94459 0.96778 0.84245 0.90436 1.21245 0.93521 0.91679 0.87113 0.91717 1.42329 1.81157 1.08972 1.03040 1.19146 1.39608 0.95033 0.83809 0.91040 1.24763 1.02028 0.95609 0.98166 1.69652 1.52484 1.02951 1.32658 0.86255 0.77850 0.77310 0.84659 1.21188 1.21674 1.21171 1.23570 1.01441 1.01829 0.92829 1.22463 0.94443 0.88475 0.97504 1.48579 1.51919 1.28826 1.04815 1.20575 0.81562 0.85947 0.82703 1.90692 1.39382 1.27453 1.82981 1.21119 1.01570 0.97478 0.78708 1.47181 1.23256 1.42668 1.20531 1.15738 0.82377 0.80942 0.79942 1.91029 1.41570 1.36342 1.72273 1.44318 1.26109 1.40569 1.23866 1.20736 0.81439 0.78476 0.87046 1.90824 1.73083 1.34720 1.34992 1.21576 0.93770 0.91634 0.89922 1.22004 0.92766 1.02336 1.03332 1.21997 1.04920 0.93378 0.99760 0.93049 0.91186 0.92068 0.78001 0.93290 0.90479 0.90569 0.91358 0.91293 0.86317 0.86627 0.72656 0.89555 0.90122 0.91361 0.90111 0.90512 0.90299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.10 37.16 0.34 -2.19 16 2 C 0.13 2.14 3.21 -66.96 -0.21 1.93 16 3 H 0.08 1.45 7.70 -51.93 -0.40 1.05 16 4 C 0.18 3.16 3.11 -66.10 -0.21 2.95 16 5 H 0.06 1.18 7.84 -51.92 -0.41 0.78 16 6 N -0.71 -16.61 5.25 -51.66 -0.27 -16.88 16 7 C -0.25 -6.37 9.98 -15.06 -0.15 -6.52 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 10 N -0.93 -27.01 13.06 55.49 0.72 -26.29 16 11 Si 0.91 21.47 29.55 -169.99 -5.02 16.45 16 12 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 15 C -0.16 -2.27 6.76 -24.58 -0.17 -2.43 16 16 C 0.09 1.03 6.69 -2.53 -0.02 1.01 16 17 N -0.61 -8.18 3.07 -163.02 -0.50 -8.68 16 18 C 0.51 6.73 7.52 -10.98 -0.08 6.65 16 19 O -0.53 -8.80 13.58 5.56 0.08 -8.72 16 20 C 0.14 1.25 5.35 -5.19 -0.03 1.22 16 21 N -0.60 -6.02 2.00 -166.44 -0.33 -6.35 16 22 C 0.71 8.41 8.68 -88.02 -0.76 7.65 16 23 O -0.54 -8.18 17.71 5.33 0.09 -8.08 16 24 N -0.68 -6.45 5.70 -15.79 -0.09 -6.55 16 25 C 0.54 5.29 7.48 -10.55 -0.08 5.22 16 26 O -0.47 -5.51 18.02 5.60 0.10 -5.41 16 27 C 0.12 1.04 1.14 -132.09 -0.15 0.89 16 28 C -0.15 -0.84 8.74 37.16 0.32 -0.51 16 29 C -0.14 -1.35 7.68 37.16 0.29 -1.06 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.06 1.06 6.88 -51.93 -0.36 0.70 16 33 H 0.39 9.72 7.51 -40.82 -0.31 9.41 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.54 7.48 -51.93 -0.39 0.15 16 39 H 0.12 0.99 8.03 -51.93 -0.42 0.57 16 40 H 0.12 0.67 7.18 -51.93 -0.37 0.30 16 41 H 0.43 3.16 8.96 -40.82 -0.37 2.80 16 42 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.36 7.60 -51.93 -0.39 -0.04 16 44 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.08 0.98 7.26 -51.93 -0.38 0.60 16 46 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 386.06 15.07 5.82 5.82 Total: -1.00 -33.77 386.06 -7.55 -41.31 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -7.14 Total: 8.91 kcal Atomic # 6 Polarization: 15.46 SS G_CDS: -1.00 Total: 14.46 kcal Atomic # 7 Polarization: -64.27 SS G_CDS: -0.47 Total: -64.74 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: 0.27 Total: -22.21 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.77 -7.55 -41.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987314346.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.457 kcal (2) G-P(sol) polarization free energy of solvation -33.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds