Wall clock time and date at job start Tue Mar 31 2020 21:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.00268 * 2 1 4 4 C 1.54315 * 109.77369 * 121.15467 * 2 1 3 5 5 H 1.09008 * 110.92577 * 23.47064 * 4 2 1 6 6 N 1.46494 * 110.74748 * 260.21506 * 4 2 1 7 7 C 1.36932 * 120.00654 * 160.10741 * 6 4 2 8 8 H 1.08002 * 119.99564 * 359.97438 * 7 6 4 9 9 C 1.38812 * 120.00584 * 180.02562 * 7 6 4 10 10 N 1.31618 * 119.99495 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00247 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47423 * 59.99626 * 11 9 7 13 13 H 1.48501 * 109.46981 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47014 * 299.99474 * 11 9 7 15 15 C 1.55161 * 102.86451 * 141.87857 * 4 2 1 16 16 C 1.54903 * 101.58203 * 324.30825 * 15 4 2 17 17 N 1.47020 * 109.87975 * 238.90178 * 2 1 3 18 18 C 1.34776 * 125.64897 * 61.68467 * 17 2 1 19 19 O 1.21277 * 120.00063 * 359.71164 * 18 17 2 20 20 C 1.50706 * 119.99956 * 179.71422 * 18 17 2 21 21 N 1.46497 * 109.46648 * 179.97438 * 20 18 17 22 22 C 1.34526 * 126.68962 * 269.97327 * 21 20 18 23 23 O 1.21537 * 123.77256 * 0.04280 * 22 21 20 24 24 N 1.33796 * 112.45867 * 179.77420 * 22 21 20 25 25 C 1.34772 * 111.64406 * 0.43741 * 24 22 21 26 26 O 1.21233 * 127.16267 * 179.85831 * 25 24 22 27 27 C 1.47308 * 126.69176 * 90.00592 * 21 20 18 28 28 C 1.53005 * 110.60223 * 61.44342 * 27 21 20 29 29 C 1.53006 * 110.72800 * 298.56317 * 27 21 20 30 30 H 1.08993 * 109.47734 * 179.64295 * 1 2 3 31 31 H 1.09000 * 109.47050 * 299.64888 * 1 2 3 32 32 H 1.09005 * 109.46883 * 59.63923 * 1 2 3 33 33 H 0.97003 * 119.99822 * 340.10695 * 6 4 2 34 34 H 0.97005 * 120.00029 * 180.02562 * 10 9 7 35 35 H 1.09001 * 111.00409 * 206.23069 * 15 4 2 36 36 H 1.08997 * 110.99867 * 82.38103 * 15 4 2 37 37 H 1.08998 * 110.36802 * 278.16634 * 16 15 4 38 38 H 1.09003 * 110.36913 * 155.84743 * 16 15 4 39 39 H 1.08998 * 109.47031 * 59.99866 * 20 18 17 40 40 H 1.09000 * 109.47031 * 299.99785 * 20 18 17 41 41 H 0.96993 * 124.18333 * 180.30845 * 24 22 21 42 42 H 1.08995 * 109.47074 * 175.62604 * 28 27 21 43 43 H 1.08994 * 109.47141 * 295.63081 * 28 27 21 44 44 H 1.09000 * 109.46802 * 55.63088 * 28 27 21 45 45 H 1.09001 * 109.47170 * 304.29655 * 29 27 21 46 46 H 1.09005 * 109.47238 * 64.29680 * 29 27 21 47 47 H 1.09003 * 109.47180 * 184.29592 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0520 -0.7513 1.2427 5 1 1.3049 -1.4513 1.6168 6 7 2.4467 0.1921 2.2917 7 6 2.5466 -0.2303 3.5904 8 1 2.3340 -1.2590 3.8414 9 6 2.9201 0.6638 4.5844 10 7 3.1786 1.9175 4.2784 11 14 3.0570 0.0873 6.3558 12 1 4.0700 -0.9947 6.4474 13 1 3.4696 1.2252 7.2162 14 1 1.7408 -0.4271 6.8121 15 6 3.2888 -1.5103 0.6933 16 6 2.8190 -1.8764 -0.7367 17 7 2.0299 -0.7141 -1.1839 18 6 1.8085 -0.3613 -2.4657 19 8 1.1413 0.6195 -2.7181 20 6 2.3900 -1.1856 -3.5853 21 7 2.0082 -0.5993 -4.8724 22 6 0.9090 -0.8874 -5.5924 23 8 0.0698 -1.6970 -5.2496 24 7 0.8398 -0.1790 -6.7253 25 6 1.8996 0.6419 -6.8638 26 8 2.1215 1.4031 -7.7809 27 6 2.7534 0.4202 -5.6309 28 6 4.1369 -0.1036 -6.0213 29 6 2.8775 1.7133 -4.8225 30 1 -0.3634 -1.0275 -0.0064 31 1 -0.3633 0.5084 0.8931 32 1 -0.3633 0.5195 -0.8868 33 1 2.6373 1.1162 2.0662 34 1 3.4400 2.5423 4.9729 35 1 3.4895 -2.4067 1.2801 36 1 4.1637 -0.8611 0.6629 37 1 2.1970 -2.7712 -0.7142 38 1 3.6775 -2.0266 -1.3913 39 1 2.0078 -2.2044 -3.5228 40 1 3.4766 -1.1993 -3.4999 41 1 0.1171 -0.2489 -7.3685 42 1 4.6413 0.6333 -6.6462 43 1 4.7256 -0.2807 -5.1212 44 1 4.0294 -1.0365 -6.5746 45 1 1.8847 2.0577 -4.5331 46 1 3.4725 1.5272 -3.9284 47 1 3.3639 2.4764 -5.4302 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987314346.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:31 Heat of formation + Delta-G solvation = -78.832174 kcal Electronic energy + Delta-G solvation = -30653.528818 eV Core-core repulsion = 26450.919275 eV Total energy + Delta-G solvation = -4202.609543 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.61800 -41.18352 -39.85703 -38.84145 -37.70442 -35.95079 -35.87713 -33.69840 -33.09373 -32.23584 -30.94656 -28.88774 -28.46720 -26.82550 -25.47458 -24.86426 -24.05622 -22.61960 -21.88803 -21.48201 -20.11790 -19.20200 -19.10784 -18.32404 -17.62898 -17.58325 -17.27531 -16.99475 -16.71615 -16.24870 -15.88529 -15.66012 -15.45801 -15.34521 -15.16933 -14.74267 -14.56070 -14.28650 -13.92429 -13.82293 -13.61257 -13.52477 -13.26686 -13.16247 -13.09036 -12.89238 -12.81612 -12.61482 -12.58444 -12.48306 -12.19369 -12.05632 -11.99864 -11.69063 -11.54743 -11.51189 -11.30381 -11.14557 -10.87428 -10.08301 -9.62058 -8.99614 -7.92266 -5.21584 0.45499 1.01905 1.50740 1.52999 1.58789 1.61176 1.77262 1.86589 2.14659 2.59304 2.84822 3.37660 3.46696 3.48967 3.74811 3.81388 3.83905 3.87642 4.06283 4.20859 4.27211 4.40608 4.45470 4.47698 4.55767 4.56512 4.63109 4.67362 4.73499 4.79365 4.82788 4.96442 4.97549 5.05659 5.09414 5.15992 5.23055 5.23341 5.30682 5.38781 5.51285 5.58192 5.87694 6.23810 6.28426 6.59908 6.94826 7.16547 7.35071 8.08118 8.31017 9.31017 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.024440 B = 0.002494 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.404405 B =11222.745126 C =11457.914147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.138 3.862 3 H 0.047 0.953 4 C 0.168 3.832 5 H 0.064 0.936 6 N -0.729 5.729 7 C -0.235 4.235 8 H 0.082 0.918 9 C -0.075 4.075 10 N -0.971 5.971 11 Si 0.971 3.029 12 H -0.274 1.274 13 H -0.301 1.301 14 H -0.280 1.280 15 C -0.147 4.147 16 C 0.101 3.899 17 N -0.606 5.606 18 C 0.500 3.500 19 O -0.570 6.570 20 C 0.139 3.861 21 N -0.594 5.594 22 C 0.706 3.294 23 O -0.576 6.576 24 N -0.673 5.673 25 C 0.539 3.461 26 O -0.488 6.488 27 C 0.121 3.879 28 C -0.141 4.141 29 C -0.137 4.137 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.371 0.629 34 H 0.250 0.750 35 H 0.087 0.913 36 H 0.060 0.940 37 H 0.092 0.908 38 H 0.115 0.885 39 H 0.137 0.863 40 H 0.162 0.838 41 H 0.438 0.562 42 H 0.092 0.908 43 H 0.102 0.898 44 H 0.077 0.923 45 H 0.047 0.953 46 H 0.080 0.920 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.807 -10.041 -22.628 25.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.033 3.967 3 H 0.065 0.935 4 C 0.058 3.942 5 H 0.082 0.918 6 N -0.369 5.369 7 C -0.367 4.367 8 H 0.100 0.900 9 C -0.267 4.267 10 N -0.621 5.621 11 Si 0.800 3.200 12 H -0.200 1.200 13 H -0.228 1.228 14 H -0.206 1.206 15 C -0.187 4.187 16 C -0.021 4.021 17 N -0.341 5.341 18 C 0.288 3.712 19 O -0.449 6.449 20 C 0.015 3.985 21 N -0.331 5.331 22 C 0.407 3.593 23 O -0.452 6.452 24 N -0.342 5.342 25 C 0.326 3.674 26 O -0.358 6.358 27 C 0.033 3.967 28 C -0.199 4.199 29 C -0.195 4.195 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.203 0.797 34 H 0.058 0.942 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.110 0.890 38 H 0.133 0.867 39 H 0.155 0.845 40 H 0.180 0.820 41 H 0.282 0.718 42 H 0.111 0.889 43 H 0.120 0.880 44 H 0.096 0.904 45 H 0.066 0.934 46 H 0.098 0.902 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.226 -9.681 -22.822 25.000 hybrid contribution -0.758 0.785 1.028 1.500 sum 2.468 -8.895 -21.794 23.669 Atomic orbital electron populations 1.21920 0.95057 1.02027 1.01212 1.21514 0.94161 0.95540 0.85474 0.93479 1.21446 0.95227 0.91090 0.86388 0.91808 1.42501 1.81566 1.09238 1.03587 1.19557 1.37002 0.95202 0.84925 0.90019 1.25537 1.03322 0.95846 1.02007 1.69818 1.54920 1.04136 1.33272 0.85248 0.78027 0.76588 0.80105 1.20006 1.22775 1.20618 1.23362 0.98776 1.01175 0.95423 1.22647 0.96046 0.87778 0.95599 1.48606 1.52120 1.29234 1.04124 1.21446 0.80824 0.85731 0.83178 1.90693 1.41185 1.29460 1.83532 1.21395 1.03933 0.96903 0.76301 1.47318 1.22719 1.42459 1.20588 1.15916 0.82365 0.80664 0.80366 1.91001 1.42906 1.38061 1.73244 1.44262 1.26376 1.40057 1.23550 1.20953 0.81414 0.77872 0.87195 1.90818 1.73523 1.35493 1.35988 1.21730 0.95077 0.91067 0.88788 1.22052 0.90515 1.02757 1.04595 1.21925 1.03095 0.94225 1.00251 0.91696 0.92785 0.93321 0.79705 0.94155 0.89484 0.92106 0.89028 0.86655 0.84514 0.82028 0.71802 0.88902 0.87962 0.90441 0.93401 0.90152 0.89037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.80 9.10 71.98 0.66 -4.14 16 2 C 0.14 4.55 3.21 45.34 0.15 4.70 16 3 H 0.05 1.84 7.70 -2.39 -0.02 1.82 16 4 C 0.17 5.91 3.11 46.18 0.14 6.05 16 5 H 0.06 2.26 7.84 -2.38 -0.02 2.24 16 6 N -0.73 -34.42 5.25 -317.34 -1.67 -36.09 16 7 C -0.24 -12.23 9.98 84.03 0.84 -11.39 16 8 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 9 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 10 N -0.97 -58.04 13.06 21.65 0.28 -57.75 16 11 Si 0.97 44.44 29.55 68.60 2.03 46.46 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 13 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 14 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 15 C -0.15 -3.91 6.76 31.99 0.22 -3.69 16 16 C 0.10 1.76 6.69 86.85 0.58 2.34 16 17 N -0.61 -14.99 3.07 -788.08 -2.42 -17.41 16 18 C 0.50 12.26 7.52 87.66 0.66 12.92 16 19 O -0.57 -18.89 13.58 -3.02 -0.04 -18.93 16 20 C 0.14 2.00 5.35 85.64 0.46 2.46 16 21 N -0.59 -10.45 2.00 -798.93 -1.60 -12.05 16 22 C 0.71 15.80 8.68 179.44 1.56 17.36 16 23 O -0.58 -16.93 17.71 -3.83 -0.07 -17.00 16 24 N -0.67 -12.21 5.70 -441.11 -2.52 -14.73 16 25 C 0.54 9.94 7.48 87.94 0.66 10.60 16 26 O -0.49 -11.02 18.02 -2.88 -0.05 -11.07 16 27 C 0.12 1.83 1.14 2.99 0.00 1.83 16 28 C -0.14 -1.07 8.74 71.98 0.63 -0.44 16 29 C -0.14 -2.41 7.68 71.98 0.55 -1.86 16 30 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.05 1.73 6.88 -2.38 -0.02 1.71 16 33 H 0.37 19.44 7.51 -92.71 -0.70 18.75 16 34 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 35 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.12 1.05 7.48 -2.39 -0.02 1.03 16 39 H 0.14 1.61 8.03 -2.39 -0.02 1.60 16 40 H 0.16 0.86 7.18 -2.39 -0.02 0.84 16 41 H 0.44 6.25 8.96 -92.71 -0.83 5.42 16 42 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.10 0.37 7.60 -2.39 -0.02 0.35 16 44 H 0.08 0.49 8.14 -2.39 -0.02 0.48 16 45 H 0.05 1.17 7.26 -2.39 -0.02 1.15 16 46 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 47 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -77.27 386.06 1.00 -76.27 By element: Atomic # 1 Polarization: 29.74 SS G_CDS: -0.52 Total: 29.22 kcal Atomic # 6 Polarization: 25.51 SS G_CDS: 7.57 Total: 33.08 kcal Atomic # 7 Polarization: -130.12 SS G_CDS: -7.91 Total: -138.03 kcal Atomic # 8 Polarization: -46.85 SS G_CDS: -0.16 Total: -47.01 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -77.27 1.00 -76.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987314346.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.561 kcal (2) G-P(sol) polarization free energy of solvation -77.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds