Wall clock time and date at job start Tue Mar 31 2020 21:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.99891 * 2 1 4 4 C 1.54327 * 109.88315 * 121.10167 * 2 1 3 5 5 H 1.09005 * 110.71834 * 23.24279 * 4 2 1 6 6 N 1.46496 * 110.86947 * 260.04449 * 4 2 1 7 7 C 1.36941 * 119.99810 * 159.93698 * 6 4 2 8 8 H 1.07994 * 119.99976 * 359.97438 * 7 6 4 9 9 C 1.38814 * 120.00066 * 179.97438 * 7 6 4 10 10 N 1.31613 * 120.00132 * 180.02562 * 9 7 6 11 11 Si 1.86805 * 119.99924 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46881 * 89.99824 * 11 9 7 13 13 H 1.48493 * 109.47343 * 210.00015 * 11 9 7 14 14 H 1.48503 * 109.47083 * 330.00542 * 11 9 7 15 15 C 1.55154 * 102.94372 * 141.60660 * 4 2 1 16 16 C 1.54908 * 101.58348 * 324.49907 * 15 4 2 17 17 N 1.47024 * 109.88155 * 238.90661 * 2 1 3 18 18 C 1.34780 * 125.64847 * 61.90992 * 17 2 1 19 19 O 1.21289 * 119.99749 * 359.71448 * 18 17 2 20 20 C 1.50692 * 120.00414 * 179.71552 * 18 17 2 21 21 N 1.46499 * 109.47697 * 179.97438 * 20 18 17 22 22 C 1.33789 * 124.17531 * 90.01950 * 21 20 18 23 23 O 1.21533 * 123.77399 * 359.96789 * 22 21 20 24 24 N 1.34531 * 112.45509 * 179.97438 * 22 21 20 25 25 C 1.47311 * 106.61971 * 0.02562 * 24 22 21 26 26 C 1.52995 * 110.60409 * 118.52455 * 25 24 22 27 27 C 1.53003 * 110.59577 * 241.31902 * 25 24 22 28 28 C 1.34768 * 124.17568 * 269.72771 * 21 20 18 29 29 O 1.21232 * 127.15808 * 359.97438 * 28 21 20 30 30 H 1.08997 * 109.47149 * 179.63676 * 1 2 3 31 31 H 1.09003 * 109.46787 * 299.63736 * 1 2 3 32 32 H 1.08997 * 109.46743 * 59.63907 * 1 2 3 33 33 H 0.96995 * 120.00098 * 339.93064 * 6 4 2 34 34 H 0.96999 * 120.00220 * 180.02562 * 10 9 7 35 35 H 1.09000 * 111.00849 * 206.42090 * 15 4 2 36 36 H 1.08998 * 111.03378 * 82.58540 * 15 4 2 37 37 H 1.09004 * 110.37002 * 278.17028 * 16 15 4 38 38 H 1.08998 * 110.46083 * 155.89157 * 16 15 4 39 39 H 1.08999 * 109.46911 * 300.00252 * 20 18 17 40 40 H 1.09007 * 109.47390 * 59.99552 * 20 18 17 41 41 H 0.97003 * 126.69279 * 179.97438 * 24 22 21 42 42 H 1.09003 * 109.47156 * 61.45257 * 26 25 24 43 43 H 1.08997 * 109.47513 * 181.44732 * 26 25 24 44 44 H 1.08997 * 109.47131 * 301.45786 * 26 25 24 45 45 H 1.08994 * 109.47407 * 58.54496 * 27 25 24 46 46 H 1.09007 * 109.47012 * 178.54316 * 27 25 24 47 47 H 1.09003 * 109.46994 * 298.54162 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0549 -0.7497 1.2427 5 1 1.3051 -1.4461 1.6181 6 7 2.4549 0.1928 2.2904 7 6 2.5546 -0.2292 3.5893 8 1 2.3378 -1.2568 3.8414 9 6 2.9341 0.6637 4.5821 10 7 3.0304 0.2579 5.8304 11 14 3.3097 2.4409 4.1461 12 1 2.0665 3.2474 4.2420 13 1 4.3226 2.9786 5.0894 14 1 3.8384 2.5094 2.7600 15 6 3.2876 -1.5144 0.6923 16 6 2.8145 -1.8794 -0.7369 17 7 2.0300 -0.7140 -1.1840 18 6 1.8122 -0.3587 -2.4657 19 8 1.1485 0.6247 -2.7179 20 6 2.3932 -1.1831 -3.5854 21 7 2.0157 -0.5938 -4.8724 22 6 2.7374 0.3306 -5.5163 23 8 3.7862 0.7806 -5.0985 24 7 2.1724 0.7064 -6.6779 25 6 0.9261 -0.0678 -6.8101 26 6 -0.2853 0.8655 -6.8561 27 6 0.9710 -0.9509 -8.0587 28 6 0.9015 -0.9201 -5.5568 29 8 0.0549 -1.7263 -5.2359 30 1 -0.3633 -1.0276 -0.0065 31 1 -0.3633 0.5082 0.8933 32 1 -0.3633 0.5194 -0.8867 33 1 2.6493 1.1158 2.0641 34 1 3.2953 0.8819 6.5242 35 1 3.4852 -2.4112 1.2794 36 1 4.1658 -0.8695 0.6603 37 1 2.1885 -2.7715 -0.7131 38 1 3.6705 -2.0349 -1.3935 39 1 3.4795 -1.2004 -3.4979 40 1 2.0076 -2.2009 -3.5251 41 1 2.5178 1.3603 -7.3057 42 1 -0.2072 1.5196 -7.7246 43 1 -1.1976 0.2736 -6.9280 44 1 -0.3139 1.4686 -5.9486 45 1 1.8253 -1.6249 -7.9966 46 1 0.0523 -1.5340 -8.1246 47 1 1.0671 -0.3230 -8.9445 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987459248.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:13 Heat of formation + Delta-G solvation = -78.203558 kcal Electronic energy + Delta-G solvation = -30522.251870 eV Core-core repulsion = 26319.669586 eV Total energy + Delta-G solvation = -4202.582284 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.70994 -41.31254 -39.82516 -39.02094 -37.72428 -36.33961 -36.07464 -33.70402 -32.65412 -32.32694 -31.51871 -29.50411 -28.45714 -26.94752 -25.42409 -24.62769 -24.16846 -22.94009 -21.89310 -21.52608 -20.38997 -19.52980 -19.09064 -18.65477 -17.86151 -17.42607 -17.13801 -16.92408 -16.76608 -16.44526 -16.01144 -15.90213 -15.46663 -15.35399 -15.32925 -14.79261 -14.69838 -14.35689 -14.06465 -13.91668 -13.67751 -13.57317 -13.49939 -13.30427 -13.23366 -13.15182 -13.05509 -12.74410 -12.61825 -12.58788 -12.17209 -12.09657 -12.02556 -11.83311 -11.72339 -11.57983 -11.27091 -10.99820 -10.78150 -10.52791 -9.79611 -9.34637 -8.03825 -5.37667 0.48605 0.90915 1.36717 1.37668 1.38960 1.44080 1.66130 2.00936 2.08788 2.45622 2.79738 3.22575 3.31409 3.47407 3.49526 3.65345 3.75286 3.80525 3.89827 4.03902 4.08758 4.18611 4.28115 4.34943 4.40599 4.42483 4.59022 4.60574 4.64894 4.70254 4.73198 4.83860 4.87152 4.96441 5.08583 5.16454 5.18802 5.19731 5.24727 5.39960 5.74613 5.76001 5.87803 6.19877 6.23144 6.39234 6.90369 7.01141 7.03882 7.78912 7.96348 9.16990 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.022957 B = 0.002615 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.364597 B =10704.322856 C =10896.122715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.131 3.869 3 H 0.051 0.949 4 C 0.174 3.826 5 H 0.074 0.926 6 N -0.745 5.745 7 C -0.222 4.222 8 H 0.069 0.931 9 C -0.057 4.057 10 N -0.978 5.978 11 Si 0.944 3.056 12 H -0.282 1.282 13 H -0.295 1.295 14 H -0.260 1.260 15 C -0.148 4.148 16 C 0.098 3.902 17 N -0.605 5.605 18 C 0.509 3.491 19 O -0.576 6.576 20 C 0.104 3.896 21 N -0.567 5.567 22 C 0.703 3.297 23 O -0.580 6.580 24 N -0.700 5.700 25 C 0.126 3.874 26 C -0.145 4.145 27 C -0.140 4.140 28 C 0.527 3.473 29 O -0.485 6.485 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.362 0.638 34 H 0.258 0.742 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.144 0.856 40 H 0.153 0.847 41 H 0.452 0.548 42 H 0.111 0.889 43 H 0.091 0.909 44 H 0.044 0.956 45 H 0.066 0.934 46 H 0.091 0.909 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.726 -5.390 -33.965 34.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.027 3.973 3 H 0.069 0.931 4 C 0.065 3.935 5 H 0.092 0.908 6 N -0.388 5.388 7 C -0.353 4.353 8 H 0.087 0.913 9 C -0.249 4.249 10 N -0.629 5.629 11 Si 0.772 3.228 12 H -0.208 1.208 13 H -0.222 1.222 14 H -0.185 1.185 15 C -0.189 4.189 16 C -0.023 4.023 17 N -0.338 5.338 18 C 0.298 3.702 19 O -0.455 6.455 20 C -0.021 4.021 21 N -0.312 5.312 22 C 0.403 3.597 23 O -0.456 6.456 24 N -0.365 5.365 25 C 0.036 3.964 26 C -0.203 4.203 27 C -0.198 4.198 28 C 0.315 3.685 29 O -0.356 6.356 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.195 0.805 34 H 0.067 0.933 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.162 0.838 40 H 0.171 0.829 41 H 0.300 0.700 42 H 0.130 0.870 43 H 0.110 0.890 44 H 0.063 0.937 45 H 0.085 0.915 46 H 0.110 0.890 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.008 -5.252 -33.526 34.171 hybrid contribution 0.540 1.719 0.755 1.953 sum -3.468 -3.534 -32.771 33.142 Atomic orbital electron populations 1.21952 0.94026 1.02630 1.01769 1.21656 0.95032 0.95616 0.85041 0.93067 1.21409 0.95404 0.90911 0.85824 0.90777 1.42711 1.82849 1.09148 1.04077 1.18980 1.36926 0.96099 0.83313 0.91292 1.25345 1.02651 1.01714 0.95140 1.69840 1.56302 1.36010 1.00735 0.85585 0.77719 0.81704 0.77787 1.20817 1.22211 1.18511 1.23364 0.98818 1.01555 0.95146 1.22699 0.96134 0.87840 0.95632 1.48533 1.52089 1.29212 1.03997 1.20959 0.80483 0.85455 0.83338 1.90679 1.41892 1.29216 1.83741 1.21617 1.04307 0.98064 0.78134 1.46007 1.24362 1.39833 1.21000 1.15977 0.82895 0.79007 0.81804 1.91002 1.23777 1.59837 1.71020 1.45600 1.23739 1.45330 1.21863 1.21662 0.87373 0.92511 0.94875 1.22041 0.95020 0.99072 1.04200 1.22051 1.04498 0.99332 0.93945 1.21459 0.79411 0.81723 0.85872 1.90780 1.37968 1.33791 1.73022 0.91248 0.91807 0.93090 0.80490 0.93343 0.89178 0.91920 0.88143 0.87455 0.83811 0.82900 0.70017 0.86995 0.89036 0.93668 0.91487 0.88991 0.87273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.65 9.11 71.98 0.66 -4.00 16 2 C 0.13 4.36 3.21 45.34 0.15 4.51 16 3 H 0.05 1.95 7.70 -2.39 -0.02 1.93 16 4 C 0.17 6.17 3.11 46.18 0.14 6.32 16 5 H 0.07 2.66 7.83 -2.38 -0.02 2.64 16 6 N -0.75 -33.86 5.06 -317.33 -1.60 -35.46 16 7 C -0.22 -12.17 10.46 84.03 0.88 -11.29 16 8 H 0.07 4.05 8.06 -2.91 -0.02 4.02 16 9 C -0.06 -3.28 5.50 84.86 0.47 -2.82 16 10 N -0.98 -61.71 13.97 21.65 0.30 -61.41 16 11 Si 0.94 46.02 27.74 68.60 1.90 47.92 16 12 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 13 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 14 H -0.26 -11.79 6.52 99.48 0.65 -11.15 16 15 C -0.15 -4.26 6.77 31.98 0.22 -4.04 16 16 C 0.10 2.01 6.70 86.85 0.58 2.59 16 17 N -0.60 -16.70 3.06 -788.03 -2.41 -19.12 16 18 C 0.51 14.81 7.71 87.65 0.68 15.49 16 19 O -0.58 -21.37 15.48 -3.06 -0.05 -21.42 16 20 C 0.10 2.12 5.18 85.63 0.44 2.56 16 21 N -0.57 -12.48 2.09 -777.23 -1.63 -14.11 16 22 C 0.70 16.10 8.62 179.44 1.55 17.65 16 23 O -0.58 -17.73 17.48 -3.82 -0.07 -17.79 16 24 N -0.70 -9.44 5.90 -439.82 -2.60 -12.03 16 25 C 0.13 1.49 1.37 2.98 0.00 1.49 16 26 C -0.15 -1.44 8.99 71.98 0.65 -0.80 16 27 C -0.14 -0.70 8.98 71.98 0.65 -0.05 16 28 C 0.53 10.59 6.99 87.94 0.61 11.21 16 29 O -0.49 -11.88 17.75 -2.88 -0.05 -11.93 16 30 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.05 1.73 6.89 -2.39 -0.02 1.72 16 33 H 0.36 16.54 5.38 -92.71 -0.50 16.04 16 34 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 35 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.11 1.52 7.46 -2.39 -0.02 1.51 16 39 H 0.14 2.44 7.56 -2.39 -0.02 2.42 16 40 H 0.15 2.21 8.00 -2.38 -0.02 2.19 16 41 H 0.45 3.49 8.96 -92.71 -0.83 2.66 16 42 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.09 0.81 8.14 -2.39 -0.02 0.80 16 44 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 46 H 0.09 0.41 8.14 -2.38 -0.02 0.39 16 47 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 Total: -1.00 -82.92 387.68 1.08 -81.84 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: -0.38 Total: 24.69 kcal Atomic # 6 Polarization: 31.15 SS G_CDS: 7.67 Total: 38.82 kcal Atomic # 7 Polarization: -134.20 SS G_CDS: -7.94 Total: -142.13 kcal Atomic # 8 Polarization: -50.98 SS G_CDS: -0.17 Total: -51.14 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.90 Total: 47.92 kcal Total: -82.92 1.08 -81.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987459248.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.638 kcal (2) G-P(sol) polarization free energy of solvation -82.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds