Wall clock time and date at job start Tue Mar 31 2020 21:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.87304 * 2 1 4 4 C 1.54428 * 109.87835 * 121.16368 * 2 1 3 5 5 C 1.55156 * 102.89529 * 141.61244 * 4 2 1 6 6 H 1.09002 * 111.00677 * 82.59320 * 5 4 2 7 7 N 1.46504 * 111.00370 * 206.40735 * 5 4 2 8 8 C 1.36939 * 119.99777 * 201.81715 * 7 5 4 9 9 H 1.07997 * 120.00123 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99689 * 179.97438 * 8 7 5 11 11 N 1.31622 * 119.99695 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 120.00260 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.47124 * 89.99504 * 12 10 8 14 14 H 1.48497 * 109.47330 * 210.00102 * 12 10 8 15 15 H 1.48508 * 109.46934 * 330.00166 * 12 10 8 16 16 C 1.54906 * 101.61451 * 324.49736 * 5 4 2 17 17 N 1.47023 * 109.88629 * 238.98449 * 2 1 3 18 18 C 1.34772 * 125.64732 * 61.67010 * 17 2 1 19 19 O 1.21280 * 119.99969 * 359.97438 * 18 17 2 20 20 C 1.50704 * 119.99675 * 179.97438 * 18 17 2 21 21 N 1.46505 * 109.46985 * 180.02562 * 20 18 17 22 22 C 1.33791 * 124.17483 * 90.02574 * 21 20 18 23 23 O 1.21538 * 123.77580 * 359.96482 * 22 21 20 24 24 N 1.34531 * 112.45237 * 179.97438 * 22 21 20 25 25 C 1.47305 * 106.62210 * 359.97438 * 24 22 21 26 26 C 1.53000 * 110.60084 * 118.52655 * 25 24 22 27 27 C 1.52997 * 110.60266 * 241.47587 * 25 24 22 28 28 C 1.34762 * 124.17538 * 269.72654 * 21 20 18 29 29 O 1.21233 * 127.15828 * 0.02562 * 28 21 20 30 30 H 1.09001 * 109.46662 * 179.56545 * 1 2 3 31 31 H 1.08996 * 109.47311 * 299.56170 * 1 2 3 32 32 H 1.08998 * 109.46898 * 59.56833 * 1 2 3 33 33 H 1.09001 * 110.72431 * 23.26630 * 4 2 1 34 34 H 1.09002 * 110.76272 * 259.96272 * 4 2 1 35 35 H 0.96998 * 119.99833 * 21.81558 * 7 5 4 36 36 H 0.96999 * 119.99332 * 180.02562 * 11 10 8 37 37 H 1.09008 * 110.36767 * 155.86672 * 16 5 4 38 38 H 1.08997 * 110.36995 * 278.19392 * 16 5 4 39 39 H 1.08997 * 109.47305 * 300.00226 * 20 18 17 40 40 H 1.09001 * 109.47068 * 60.00996 * 20 18 17 41 41 H 0.97003 * 126.68580 * 179.97438 * 24 22 21 42 42 H 1.09003 * 109.47235 * 61.45099 * 26 25 24 43 43 H 1.08999 * 109.47491 * 181.45560 * 26 25 24 44 44 H 1.09003 * 109.46993 * 301.45987 * 26 25 24 45 45 H 1.09002 * 109.47325 * 58.54438 * 27 25 24 46 46 H 1.09000 * 109.47578 * 178.55088 * 27 25 24 47 47 H 1.09000 * 109.46637 * 298.54784 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0551 -0.7515 1.2427 5 6 3.2877 -1.5151 0.6904 6 1 4.1655 -0.8696 0.6593 7 7 3.5541 -2.7215 1.4777 8 6 4.8019 -3.2855 1.4653 9 1 5.5894 -2.8412 0.8748 10 6 5.0545 -4.4282 2.2117 11 7 6.2537 -4.9706 2.1994 12 14 3.6921 -5.1972 3.2326 13 1 2.9615 -6.1956 2.4113 14 1 4.2812 -5.8680 4.4192 15 1 2.7505 -4.1390 3.6787 16 6 2.8146 -1.8784 -0.7392 17 7 2.0301 -0.7124 -1.1849 18 6 1.8085 -0.3579 -2.4661 19 8 1.1450 0.6258 -2.7171 20 6 2.3854 -1.1838 -3.5870 21 7 2.0054 -0.5946 -4.8733 22 6 2.7269 0.3284 -5.5196 23 8 3.7775 0.7770 -5.1048 24 7 2.1592 0.7045 -6.6798 25 6 0.9120 -0.0686 -6.8089 26 6 -0.2986 0.8659 -6.8520 27 6 0.9545 -0.9548 -8.0553 28 6 0.8889 -0.9195 -5.5545 29 8 0.0414 -1.7236 -5.2306 30 1 -0.3633 -1.0277 -0.0078 31 1 -0.3634 0.5070 0.8938 32 1 -0.3633 0.5205 -0.8861 33 1 1.3055 -1.4486 1.6172 34 1 2.3535 -0.0495 2.0213 35 1 2.8467 -3.1207 2.0078 36 1 6.4300 -5.7694 2.7207 37 1 3.6718 -2.0318 -1.3950 38 1 2.1887 -2.7704 -0.7166 39 1 3.4719 -1.2021 -3.5029 40 1 1.9989 -2.2011 -3.5247 41 1 2.5041 1.3576 -7.3088 42 1 -0.2221 1.5198 -7.7208 43 1 -1.2117 0.2748 -6.9215 44 1 -0.3245 1.4692 -5.9445 45 1 1.8081 -1.6296 -7.9925 46 1 0.0351 -1.5368 -8.1189 47 1 1.0504 -0.3291 -8.9427 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989752181.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:28 Heat of formation + Delta-G solvation = -78.612018 kcal Electronic energy + Delta-G solvation = -30534.179045 eV Core-core repulsion = 26331.579049 eV Total energy + Delta-G solvation = -4202.599996 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.72844 -41.29130 -39.84231 -38.98187 -37.73716 -36.41071 -36.07750 -33.59170 -33.20008 -32.42526 -30.59116 -29.67842 -28.46706 -26.80462 -25.65159 -25.31892 -23.85984 -22.56510 -21.99275 -21.52586 -20.17914 -19.69827 -19.10708 -18.66089 -17.88617 -17.41436 -17.21049 -16.89884 -16.78033 -16.41157 -16.16398 -15.77680 -15.51072 -15.37465 -15.08927 -14.92503 -14.57931 -14.38191 -14.22020 -14.00253 -13.68689 -13.63642 -13.50731 -13.30190 -13.16153 -13.15228 -12.96727 -12.89077 -12.60403 -12.35533 -12.18459 -12.03771 -11.95214 -11.82769 -11.73839 -11.52176 -11.28725 -11.04349 -10.79018 -10.54120 -9.80999 -9.35505 -8.00612 -5.36782 0.46839 0.89293 1.35775 1.42489 1.45176 1.52347 1.66326 2.00494 2.08272 2.50825 2.77781 3.15628 3.28705 3.45661 3.60009 3.72850 3.74877 3.78153 3.83290 4.01742 4.05351 4.15050 4.26050 4.37840 4.38437 4.42424 4.59110 4.65062 4.67076 4.72145 4.72316 4.80160 4.83420 5.01794 5.05725 5.08328 5.17560 5.17894 5.30942 5.34678 5.73441 5.78814 5.87747 6.21430 6.22499 6.34826 6.88425 7.00149 7.07987 7.80788 8.00595 9.20210 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016749 B = 0.002832 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.293539 B = 9886.033230 C =10418.634865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.136 3.864 3 H 0.073 0.927 4 C -0.124 4.124 5 C 0.169 3.831 6 H 0.064 0.936 7 N -0.736 5.736 8 C -0.234 4.234 9 H 0.061 0.939 10 C -0.059 4.059 11 N -0.982 5.982 12 Si 0.952 3.048 13 H -0.279 1.279 14 H -0.301 1.301 15 H -0.246 1.246 16 C 0.078 3.922 17 N -0.603 5.603 18 C 0.515 3.485 19 O -0.568 6.568 20 C 0.099 3.901 21 N -0.567 5.567 22 C 0.702 3.298 23 O -0.580 6.580 24 N -0.698 5.698 25 C 0.128 3.872 26 C -0.143 4.143 27 C -0.142 4.142 28 C 0.525 3.475 29 O -0.488 6.488 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.370 0.630 36 H 0.258 0.742 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.133 0.867 40 H 0.140 0.860 41 H 0.453 0.547 42 H 0.113 0.887 43 H 0.091 0.909 44 H 0.047 0.953 45 H 0.062 0.938 46 H 0.091 0.909 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.171 11.430 -20.204 28.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.033 3.967 3 H 0.091 0.909 4 C -0.163 4.163 5 C 0.059 3.941 6 H 0.082 0.918 7 N -0.378 5.378 8 C -0.364 4.364 9 H 0.079 0.921 10 C -0.251 4.251 11 N -0.632 5.632 12 Si 0.779 3.221 13 H -0.205 1.205 14 H -0.228 1.228 15 H -0.170 1.170 16 C -0.048 4.048 17 N -0.337 5.337 18 C 0.303 3.697 19 O -0.448 6.448 20 C -0.026 4.026 21 N -0.312 5.312 22 C 0.403 3.597 23 O -0.456 6.456 24 N -0.363 5.363 25 C 0.038 3.962 26 C -0.201 4.201 27 C -0.200 4.200 28 C 0.313 3.687 29 O -0.359 6.359 30 H 0.075 0.925 31 H 0.106 0.894 32 H 0.065 0.935 33 H 0.106 0.894 34 H 0.116 0.884 35 H 0.205 0.795 36 H 0.066 0.934 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.151 0.849 40 H 0.158 0.842 41 H 0.301 0.699 42 H 0.132 0.868 43 H 0.110 0.890 44 H 0.067 0.933 45 H 0.081 0.919 46 H 0.110 0.890 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -16.207 11.687 -19.976 28.255 hybrid contribution 0.172 -0.604 0.829 1.040 sum -16.035 11.083 -19.147 27.323 Atomic orbital electron populations 1.22040 0.93843 1.02270 1.02733 1.21661 0.95193 0.96076 0.83759 0.90866 1.22998 0.97267 0.99737 0.96278 1.21378 0.96331 0.87479 0.88935 0.91772 1.42557 1.09693 1.30318 1.55241 1.19011 0.88378 1.06227 1.22828 0.92110 1.25484 0.98680 0.99013 1.01923 1.69885 1.22598 1.23955 1.46735 0.85464 0.79404 0.79002 0.78225 1.20484 1.22821 1.17018 1.23284 0.94903 0.87698 0.98871 1.48550 1.51686 1.28879 1.04581 1.20631 0.80416 0.85317 0.83385 1.90647 1.41671 1.28721 1.83753 1.21541 1.03919 0.98048 0.79131 1.46014 1.24313 1.39912 1.20928 1.15975 0.82866 0.78990 0.81876 1.91003 1.23536 1.59900 1.71171 1.45567 1.23591 1.45393 1.21774 1.21667 0.87558 0.92526 0.94468 1.22035 0.94706 0.98944 1.04412 1.22061 1.04378 0.99338 0.94177 1.21569 0.79393 0.81727 0.85983 1.90774 1.38210 1.33896 1.72979 0.92462 0.89414 0.93519 0.89378 0.88361 0.79529 0.93352 0.90519 0.90478 0.84917 0.84239 0.69888 0.86793 0.89044 0.93348 0.91895 0.88977 0.86976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.11 71.98 0.66 -3.01 16 2 C 0.14 3.64 3.46 45.38 0.16 3.80 16 3 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 4 C -0.12 -3.25 6.12 31.82 0.19 -3.05 16 5 C 0.17 5.69 3.70 46.38 0.17 5.86 16 6 H 0.06 2.33 8.11 -2.39 -0.02 2.31 16 7 N -0.74 -30.75 5.06 -316.37 -1.60 -32.35 16 8 C -0.23 -12.37 10.46 84.03 0.88 -11.49 16 9 H 0.06 3.55 8.06 -2.91 -0.02 3.53 16 10 C -0.06 -3.31 5.50 84.86 0.47 -2.85 16 11 N -0.98 -60.85 13.97 21.65 0.30 -60.55 16 12 Si 0.95 42.91 27.74 68.60 1.90 44.81 16 13 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 14 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 15 H -0.25 -9.74 6.52 99.48 0.65 -9.09 16 16 C 0.08 2.37 6.39 86.85 0.55 2.92 16 17 N -0.60 -17.78 3.06 -787.84 -2.41 -20.20 16 18 C 0.51 16.23 7.71 87.66 0.68 16.91 16 19 O -0.57 -20.80 15.47 -3.03 -0.05 -20.84 16 20 C 0.10 2.64 5.19 85.63 0.44 3.08 16 21 N -0.57 -14.67 2.09 -777.20 -1.63 -16.30 16 22 C 0.70 18.11 8.62 179.44 1.55 19.65 16 23 O -0.58 -19.45 17.48 -3.83 -0.07 -19.52 16 24 N -0.70 -10.71 5.90 -439.82 -2.60 -13.31 16 25 C 0.13 1.75 1.37 2.99 0.00 1.76 16 26 C -0.14 -1.49 9.00 71.98 0.65 -0.84 16 27 C -0.14 -1.04 8.98 71.98 0.65 -0.39 16 28 C 0.52 12.16 6.98 87.94 0.61 12.78 16 29 O -0.49 -13.59 17.75 -2.88 -0.05 -13.64 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.05 1.33 6.88 -2.39 -0.02 1.31 16 33 H 0.09 2.16 7.71 -2.39 -0.02 2.14 16 34 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.37 14.72 5.60 -92.71 -0.52 14.20 16 36 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 37 H 0.08 2.32 7.48 -2.38 -0.02 2.30 16 38 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.13 3.39 7.56 -2.39 -0.02 3.38 16 40 H 0.14 3.24 8.00 -2.39 -0.02 3.22 16 41 H 0.45 4.12 8.96 -92.71 -0.83 3.29 16 42 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 Total: -1.00 -78.77 388.08 1.05 -77.72 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: -0.40 Total: 29.05 kcal Atomic # 6 Polarization: 37.46 SS G_CDS: 7.66 Total: 45.12 kcal Atomic # 7 Polarization: -134.76 SS G_CDS: -7.94 Total: -142.70 kcal Atomic # 8 Polarization: -53.84 SS G_CDS: -0.17 Total: -54.00 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.90 Total: 44.81 kcal Total: -78.77 1.05 -77.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989752181.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.894 kcal (2) G-P(sol) polarization free energy of solvation -78.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds