Wall clock time and date at job start Tue Mar 31 2020 21:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.58757 * 2 1 4 4 C 1.53193 * 109.58464 * 239.71586 * 2 1 3 5 5 H 1.09002 * 109.49377 * 65.62985 * 4 2 1 6 6 N 1.46490 * 109.52574 * 305.54630 * 4 2 1 7 7 C 1.34782 * 119.99988 * 155.14217 * 6 4 2 8 8 O 1.21281 * 119.99951 * 0.02562 * 7 6 4 9 9 C 1.50699 * 120.00051 * 179.97438 * 7 6 4 10 10 N 1.46499 * 109.47106 * 180.02562 * 9 7 6 11 11 C 1.46408 * 119.53495 * 269.72946 * 10 9 7 12 12 C 1.53357 * 109.34796 * 144.04944 * 11 10 9 13 13 C 1.50807 * 109.08854 * 46.99270 * 12 11 10 14 14 O 1.21236 * 120.01710 * 145.63271 * 13 12 11 15 15 N 1.34557 * 119.96596 * 325.61259 * 13 12 11 16 16 C 1.34294 * 119.53699 * 90.00376 * 10 9 7 17 17 O 1.21545 * 119.20449 * 5.64423 * 16 10 9 18 18 C 1.53043 * 109.31167 * 185.57256 * 4 2 1 19 19 C 1.53049 * 109.53109 * 61.37122 * 18 4 2 20 20 C 1.53188 * 109.31365 * 298.62846 * 19 18 4 21 21 N 1.46927 * 109.58613 * 120.43051 * 2 1 3 22 22 C 1.36935 * 120.63403 * 353.37068 * 21 2 1 23 23 H 1.08007 * 119.99864 * 29.01357 * 22 21 2 24 24 C 1.38814 * 120.00172 * 209.01367 * 22 21 2 25 25 N 1.31612 * 120.00200 * 15.04056 * 24 22 21 26 26 Si 1.86798 * 119.99944 * 195.03690 * 24 22 21 27 27 H 1.48495 * 109.47316 * 89.99828 * 26 24 22 28 28 H 1.48500 * 109.47279 * 210.00580 * 26 24 22 29 29 H 1.48509 * 109.47014 * 329.99891 * 26 24 22 30 30 H 1.08996 * 109.47136 * 180.28657 * 1 2 3 31 31 H 1.09007 * 109.46854 * 300.28046 * 1 2 3 32 32 H 1.08993 * 109.47323 * 60.28100 * 1 2 3 33 33 H 0.97001 * 120.00492 * 335.14711 * 6 4 2 34 34 H 1.09002 * 109.47662 * 300.00423 * 9 7 6 35 35 H 1.09000 * 109.46680 * 60.00696 * 9 7 6 36 36 H 1.08998 * 109.46525 * 264.17561 * 11 10 9 37 37 H 1.08992 * 109.46492 * 24.15485 * 11 10 9 38 38 H 1.08998 * 109.69129 * 287.03598 * 12 11 10 39 39 H 1.09000 * 109.48630 * 166.82529 * 12 11 10 40 40 H 0.97003 * 119.50327 * 184.41036 * 15 13 12 41 41 H 1.08994 * 109.46268 * 301.35442 * 18 4 2 42 42 H 1.08996 * 109.44597 * 181.38134 * 18 4 2 43 43 H 1.08993 * 109.49813 * 58.58675 * 19 18 4 44 44 H 1.09000 * 109.49056 * 178.68195 * 19 18 4 45 45 H 1.09003 * 109.58623 * 174.42344 * 20 19 18 46 46 H 1.09003 * 109.59061 * 294.85423 * 20 19 18 47 47 H 0.96996 * 120.00390 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 -1.2463 5 1 1.7660 -0.1641 -2.1370 6 7 1.4514 -2.0662 -1.3105 7 6 1.3314 -2.6938 -2.4972 8 8 1.7140 -2.1507 -3.5119 9 6 0.7228 -4.0709 -2.5632 10 7 0.7061 -4.5313 -3.9539 11 6 -0.4580 -4.2460 -4.7947 12 6 0.0072 -3.9689 -6.2295 13 6 0.9929 -5.0330 -6.6425 14 8 1.0264 -5.4149 -7.7927 15 7 1.8352 -5.5579 -5.7340 16 6 1.7565 -5.2139 -4.4379 17 8 2.6578 -5.5276 -3.6851 18 6 3.5675 -0.8464 -1.1713 19 6 3.9569 -1.6658 0.0613 20 6 3.4651 -0.9487 1.3225 21 7 2.0225 -0.7011 1.1936 22 6 1.1538 -1.1155 2.1676 23 1 0.1358 -1.3693 1.9108 24 6 1.5814 -1.2094 3.4849 25 7 2.7046 -0.6318 3.8549 26 14 0.5626 -2.1554 4.7324 27 1 0.9965 -3.5754 4.7511 28 1 0.7535 -1.5615 6.0800 29 1 -0.8726 -2.0813 4.3577 30 1 -0.3633 -1.0276 0.0051 31 1 -0.3633 0.5182 0.8875 32 1 -0.3633 0.5094 -0.8924 33 1 1.1456 -2.5008 -0.4990 34 1 1.3149 -4.7592 -1.9600 35 1 -0.2968 -4.0362 -2.1794 36 1 -1.1306 -5.1037 -4.7869 37 1 -0.9803 -3.3714 -4.4072 38 1 0.4857 -2.9908 -6.2779 39 1 -0.8517 -3.9880 -6.9003 40 1 2.5092 -6.1946 -6.0193 41 1 4.0061 0.1488 -1.0991 42 1 3.9375 -1.3422 -2.0687 43 1 3.4983 -2.6528 0.0018 44 1 5.0412 -1.7697 0.1013 45 1 3.6519 -1.5746 2.1951 46 1 3.9903 0.0002 1.4317 47 1 3.0032 -0.6970 4.7755 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994170049.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:43 Heat of formation + Delta-G solvation = -69.005201 kcal Electronic energy + Delta-G solvation = -31085.028573 eV Core-core repulsion = 26882.845160 eV Total energy + Delta-G solvation = -4202.183414 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.87894 -39.87164 -39.04217 -37.68292 -36.32247 -34.84310 -33.97680 -32.49794 -31.94053 -31.58438 -29.65228 -27.76367 -26.16100 -25.36492 -25.04913 -23.37839 -22.13291 -20.94285 -20.56231 -19.29038 -18.77821 -18.55948 -17.97641 -17.32462 -16.63268 -16.51221 -15.85567 -15.37803 -15.20370 -14.89952 -14.75789 -14.73880 -14.52549 -13.99848 -13.75917 -13.62244 -13.56055 -13.19267 -12.97850 -12.85843 -12.61068 -12.20681 -11.91200 -11.88268 -11.32650 -11.27746 -11.01539 -10.91576 -10.76770 -10.67590 -10.56349 -10.52224 -10.44957 -10.15226 -10.05186 -10.02228 -9.69547 -9.35141 -9.00670 -8.61193 -8.50188 -6.73614 -5.85823 -3.31867 1.47335 2.05749 2.79100 2.80941 2.92666 3.30905 3.37134 3.39807 3.60926 4.04389 4.18102 4.40068 4.57885 4.66376 4.95044 4.99960 5.05837 5.23402 5.25835 5.28484 5.37205 5.53797 5.56623 5.69040 5.71773 5.83980 5.93075 6.06275 6.16403 6.19084 6.27920 6.35461 6.50473 6.63961 6.65470 6.75584 6.88959 6.90867 7.03685 7.09337 7.23652 7.36039 7.63789 7.72480 7.86659 7.95336 8.36791 8.50186 9.12803 9.75975 10.32933 11.21876 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018552 B = 0.002984 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.912141 B = 9382.070560 C = 9615.972166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.159 3.841 3 H 0.039 0.961 4 C 0.136 3.864 5 H 0.075 0.925 6 N -0.696 5.696 7 C 0.492 3.508 8 O -0.549 6.549 9 C 0.106 3.894 10 N -0.598 5.598 11 C 0.114 3.886 12 C -0.158 4.158 13 C 0.527 3.473 14 O -0.509 6.509 15 N -0.674 5.674 16 C 0.715 3.285 17 O -0.551 6.551 18 C -0.121 4.121 19 C -0.139 4.139 20 C 0.171 3.829 21 N -0.586 5.586 22 C -0.258 4.258 23 H 0.071 0.929 24 C 0.006 3.994 25 N -0.899 5.899 26 Si 0.901 3.099 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.279 1.279 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.409 0.591 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.425 0.575 41 H 0.061 0.939 42 H 0.049 0.951 43 H 0.054 0.946 44 H 0.046 0.954 45 H 0.088 0.912 46 H 0.017 0.983 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.436 -6.053 -14.949 17.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.052 3.948 3 H 0.056 0.944 4 C 0.030 3.970 5 H 0.093 0.907 6 N -0.348 5.348 7 C 0.276 3.724 8 O -0.428 6.428 9 C -0.021 4.021 10 N -0.334 5.334 11 C -0.009 4.009 12 C -0.198 4.198 13 C 0.315 3.685 14 O -0.381 6.381 15 N -0.343 5.343 16 C 0.417 3.583 17 O -0.425 6.425 18 C -0.159 4.159 19 C -0.179 4.179 20 C 0.045 3.955 21 N -0.310 5.310 22 C -0.387 4.387 23 H 0.089 0.911 24 C -0.193 4.193 25 N -0.543 5.543 26 Si 0.731 3.269 27 H -0.214 1.214 28 H -0.219 1.219 29 H -0.205 1.205 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.246 0.754 34 H 0.139 0.861 35 H 0.133 0.867 36 H 0.097 0.903 37 H 0.121 0.879 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.266 0.734 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.106 0.894 46 H 0.035 0.965 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.753 -5.868 -15.617 17.998 hybrid contribution -0.146 -0.775 1.016 1.286 sum -6.899 -6.643 -14.600 17.461 Atomic orbital electron populations 1.21775 0.95650 1.01371 1.00409 1.20715 0.93313 0.93915 0.86875 0.94390 1.21530 0.92954 0.82851 0.99674 0.90740 1.45960 1.61236 1.18697 1.08874 1.20935 0.79614 0.87662 0.84207 1.90651 1.50232 1.67165 1.34709 1.21394 1.04041 0.94805 0.81831 1.46537 1.17300 1.56763 1.12796 1.21699 0.87449 1.03073 0.88699 1.22307 1.00007 0.99471 0.98039 1.21004 0.80624 0.81907 0.84944 1.90784 1.68946 1.59719 1.18688 1.44244 1.36376 1.45911 1.07765 1.15520 0.82647 0.78516 0.81659 1.91026 1.37778 1.57724 1.55937 1.21763 0.95463 1.00382 0.98337 1.22132 0.99013 0.99555 0.97172 1.20825 0.83050 0.97197 0.94404 1.44174 1.03163 1.64728 1.18913 1.19153 0.94810 1.38389 0.86338 0.91115 1.25105 0.97710 0.99492 0.97015 1.70010 1.23233 1.44121 1.16955 0.86326 0.79761 0.79788 0.81034 1.21433 1.21866 1.20461 0.92786 0.91804 0.94280 0.75420 0.86085 0.86722 0.90311 0.87884 0.86123 0.85778 0.73411 0.92037 0.93214 0.92769 0.93497 0.89390 0.96483 0.93586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 7.72 37.16 0.29 -1.92 16 2 C 0.16 2.94 3.20 -67.60 -0.22 2.72 16 3 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 4 C 0.14 2.26 2.32 -67.81 -0.16 2.10 16 5 H 0.07 1.24 7.58 -51.93 -0.39 0.85 16 6 N -0.70 -10.32 3.47 -53.69 -0.19 -10.50 16 7 C 0.49 6.90 7.86 -10.98 -0.09 6.82 16 8 O -0.55 -9.30 16.10 5.56 0.09 -9.22 16 9 C 0.11 1.10 5.84 -5.19 -0.03 1.07 16 10 N -0.60 -6.04 2.28 -180.96 -0.41 -6.46 16 11 C 0.11 0.72 6.60 -3.91 -0.03 0.69 16 12 C -0.16 -1.09 6.30 -27.65 -0.17 -1.26 16 13 C 0.53 5.29 7.76 -11.03 -0.09 5.20 16 14 O -0.51 -6.51 17.93 5.60 0.10 -6.41 16 15 N -0.67 -7.07 5.18 -16.02 -0.08 -7.16 16 16 C 0.72 8.95 8.22 -87.75 -0.72 8.23 16 17 O -0.55 -8.91 16.57 5.33 0.09 -8.82 16 18 C -0.12 -2.11 5.58 -26.68 -0.15 -2.26 16 19 C -0.14 -2.62 5.93 -26.61 -0.16 -2.78 16 20 C 0.17 3.80 5.29 -3.71 -0.02 3.78 16 21 N -0.59 -12.84 2.65 -164.77 -0.44 -13.28 16 22 C -0.26 -6.15 8.61 -15.06 -0.13 -6.28 16 23 H 0.07 1.61 6.20 -52.48 -0.33 1.29 16 24 C 0.01 0.16 4.96 -17.43 -0.09 0.07 16 25 N -0.90 -24.57 11.14 55.49 0.62 -23.95 16 26 Si 0.90 20.13 29.58 -169.99 -5.03 15.11 16 27 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 29 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 30 H 0.05 0.84 6.38 -51.93 -0.33 0.51 16 31 H 0.06 1.15 7.66 -51.93 -0.40 0.75 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.41 6.12 7.77 -40.82 -0.32 5.80 16 34 H 0.12 1.35 7.27 -51.93 -0.38 0.97 16 35 H 0.11 0.76 8.06 -51.93 -0.42 0.34 16 36 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.10 0.52 8.01 -51.93 -0.42 0.11 16 38 H 0.12 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.42 4.00 8.86 -40.82 -0.36 3.64 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.05 1.03 7.53 -51.93 -0.39 0.64 16 44 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.09 2.22 6.06 -51.93 -0.31 1.90 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 375.34 15.07 5.66 5.66 Total: -1.00 -32.79 375.34 -8.33 -41.12 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -6.98 Total: 7.72 kcal Atomic # 6 Polarization: 17.94 SS G_CDS: -1.75 Total: 16.19 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: -0.50 Total: -61.34 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: 0.28 Total: -24.45 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.11 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.79 -8.33 -41.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994170049.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.884 kcal (2) G-P(sol) polarization free energy of solvation -32.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds