Wall clock time and date at job start Tue Mar 31 2020 21:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.58757 * 2 1 4 4 C 1.53193 * 109.58464 * 239.71586 * 2 1 3 5 5 H 1.09002 * 109.49377 * 65.62985 * 4 2 1 6 6 N 1.46490 * 109.52574 * 305.54630 * 4 2 1 7 7 C 1.34782 * 119.99988 * 155.14217 * 6 4 2 8 8 O 1.21281 * 119.99951 * 0.02562 * 7 6 4 9 9 C 1.50699 * 120.00051 * 179.97438 * 7 6 4 10 10 N 1.46499 * 109.47106 * 180.02562 * 9 7 6 11 11 C 1.46408 * 119.53495 * 269.72946 * 10 9 7 12 12 C 1.53357 * 109.34796 * 144.04944 * 11 10 9 13 13 C 1.50807 * 109.08854 * 46.99270 * 12 11 10 14 14 O 1.21236 * 120.01710 * 145.63271 * 13 12 11 15 15 N 1.34557 * 119.96596 * 325.61259 * 13 12 11 16 16 C 1.34294 * 119.53699 * 90.00376 * 10 9 7 17 17 O 1.21545 * 119.20449 * 5.64423 * 16 10 9 18 18 C 1.53043 * 109.31167 * 185.57256 * 4 2 1 19 19 C 1.53049 * 109.53109 * 61.37122 * 18 4 2 20 20 C 1.53188 * 109.31365 * 298.62846 * 19 18 4 21 21 N 1.46927 * 109.58613 * 120.43051 * 2 1 3 22 22 C 1.36935 * 120.63403 * 353.37068 * 21 2 1 23 23 H 1.08007 * 119.99864 * 29.01357 * 22 21 2 24 24 C 1.38814 * 120.00172 * 209.01367 * 22 21 2 25 25 N 1.31612 * 120.00200 * 15.04056 * 24 22 21 26 26 Si 1.86798 * 119.99944 * 195.03690 * 24 22 21 27 27 H 1.48495 * 109.47316 * 89.99828 * 26 24 22 28 28 H 1.48500 * 109.47279 * 210.00580 * 26 24 22 29 29 H 1.48509 * 109.47014 * 329.99891 * 26 24 22 30 30 H 1.08996 * 109.47136 * 180.28657 * 1 2 3 31 31 H 1.09007 * 109.46854 * 300.28046 * 1 2 3 32 32 H 1.08993 * 109.47323 * 60.28100 * 1 2 3 33 33 H 0.97001 * 120.00492 * 335.14711 * 6 4 2 34 34 H 1.09002 * 109.47662 * 300.00423 * 9 7 6 35 35 H 1.09000 * 109.46680 * 60.00696 * 9 7 6 36 36 H 1.08998 * 109.46525 * 264.17561 * 11 10 9 37 37 H 1.08992 * 109.46492 * 24.15485 * 11 10 9 38 38 H 1.08998 * 109.69129 * 287.03598 * 12 11 10 39 39 H 1.09000 * 109.48630 * 166.82529 * 12 11 10 40 40 H 0.97003 * 119.50327 * 184.41036 * 15 13 12 41 41 H 1.08994 * 109.46268 * 301.35442 * 18 4 2 42 42 H 1.08996 * 109.44597 * 181.38134 * 18 4 2 43 43 H 1.08993 * 109.49813 * 58.58675 * 19 18 4 44 44 H 1.09000 * 109.49056 * 178.68195 * 19 18 4 45 45 H 1.09003 * 109.58623 * 174.42344 * 20 19 18 46 46 H 1.09003 * 109.59061 * 294.85423 * 20 19 18 47 47 H 0.96996 * 120.00390 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 -1.2463 5 1 1.7660 -0.1641 -2.1370 6 7 1.4514 -2.0662 -1.3105 7 6 1.3314 -2.6938 -2.4972 8 8 1.7140 -2.1507 -3.5119 9 6 0.7228 -4.0709 -2.5632 10 7 0.7061 -4.5313 -3.9539 11 6 -0.4580 -4.2460 -4.7947 12 6 0.0072 -3.9689 -6.2295 13 6 0.9929 -5.0330 -6.6425 14 8 1.0264 -5.4149 -7.7927 15 7 1.8352 -5.5579 -5.7340 16 6 1.7565 -5.2139 -4.4379 17 8 2.6578 -5.5276 -3.6851 18 6 3.5675 -0.8464 -1.1713 19 6 3.9569 -1.6658 0.0613 20 6 3.4651 -0.9487 1.3225 21 7 2.0225 -0.7011 1.1936 22 6 1.1538 -1.1155 2.1676 23 1 0.1358 -1.3693 1.9108 24 6 1.5814 -1.2094 3.4849 25 7 2.7046 -0.6318 3.8549 26 14 0.5626 -2.1554 4.7324 27 1 0.9965 -3.5754 4.7511 28 1 0.7535 -1.5615 6.0800 29 1 -0.8726 -2.0813 4.3577 30 1 -0.3633 -1.0276 0.0051 31 1 -0.3633 0.5182 0.8875 32 1 -0.3633 0.5094 -0.8924 33 1 1.1456 -2.5008 -0.4990 34 1 1.3149 -4.7592 -1.9600 35 1 -0.2968 -4.0362 -2.1794 36 1 -1.1306 -5.1037 -4.7869 37 1 -0.9803 -3.3714 -4.4072 38 1 0.4857 -2.9908 -6.2779 39 1 -0.8517 -3.9880 -6.9003 40 1 2.5092 -6.1946 -6.0193 41 1 4.0061 0.1488 -1.0991 42 1 3.9375 -1.3422 -2.0687 43 1 3.4983 -2.6528 0.0018 44 1 5.0412 -1.7697 0.1013 45 1 3.6519 -1.5746 2.1951 46 1 3.9903 0.0002 1.4317 47 1 3.0032 -0.6970 4.7755 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994170049.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:42 Heat of formation + Delta-G solvation = -92.130206 kcal Electronic energy + Delta-G solvation = -31086.031349 eV Core-core repulsion = 26882.845160 eV Total energy + Delta-G solvation = -4203.186189 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.71752 -41.06520 -40.04521 -39.05240 -37.19880 -35.76036 -35.49337 -34.00854 -33.37762 -32.47377 -31.18260 -28.79899 -27.62163 -26.76634 -25.99985 -24.33510 -23.63441 -22.37990 -21.86262 -20.26791 -20.06247 -19.35950 -18.83820 -18.31646 -18.20821 -17.54782 -17.11414 -16.73867 -16.40028 -15.95715 -15.82559 -15.68404 -15.57838 -15.51126 -15.06682 -14.81011 -14.73864 -14.40449 -14.24635 -14.18965 -13.61574 -13.48163 -12.99574 -12.92622 -12.81053 -12.65854 -12.54965 -12.41065 -12.27126 -12.12518 -11.86796 -11.83415 -11.65774 -11.39418 -11.37870 -11.33406 -11.08673 -11.00099 -10.45671 -9.89494 -9.83824 -8.58239 -7.76956 -5.23849 0.64081 1.25800 1.54382 1.56335 1.63257 1.73386 1.96880 2.11182 2.54323 2.58949 3.39949 3.40180 3.62379 3.63106 3.87344 4.02201 4.08657 4.12025 4.14889 4.22890 4.42076 4.46361 4.48595 4.60594 4.63230 4.71657 4.80337 4.86136 4.95383 5.00684 5.02070 5.03910 5.10877 5.15821 5.26705 5.39251 5.44026 5.55006 5.58546 5.70402 5.79261 5.83400 6.29073 6.42641 6.48359 6.74001 7.03840 7.23114 7.37225 7.93978 8.47406 9.29920 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018552 B = 0.002984 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.912141 B = 9382.070560 C = 9615.972166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.156 3.844 3 H 0.025 0.975 4 C 0.149 3.851 5 H 0.082 0.918 6 N -0.695 5.695 7 C 0.493 3.507 8 O -0.578 6.578 9 C 0.110 3.890 10 N -0.593 5.593 11 C 0.108 3.892 12 C -0.151 4.151 13 C 0.527 3.473 14 O -0.540 6.540 15 N -0.673 5.673 16 C 0.711 3.289 17 O -0.596 6.596 18 C -0.116 4.116 19 C -0.125 4.125 20 C 0.180 3.820 21 N -0.596 5.596 22 C -0.243 4.243 23 H 0.089 0.911 24 C -0.054 4.054 25 N -0.940 5.940 26 Si 0.960 3.040 27 H -0.289 1.289 28 H -0.309 1.309 29 H -0.261 1.261 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.066 0.934 33 H 0.411 0.589 34 H 0.113 0.887 35 H 0.163 0.837 36 H 0.109 0.891 37 H 0.126 0.874 38 H 0.114 0.886 39 H 0.154 0.846 40 H 0.425 0.575 41 H 0.062 0.938 42 H 0.047 0.953 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.056 0.944 46 H -0.009 1.009 47 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.433 -6.673 -16.441 20.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.050 3.950 3 H 0.043 0.957 4 C 0.042 3.958 5 H 0.100 0.900 6 N -0.347 5.347 7 C 0.279 3.721 8 O -0.458 6.458 9 C -0.017 4.017 10 N -0.328 5.328 11 C -0.013 4.013 12 C -0.191 4.191 13 C 0.318 3.682 14 O -0.415 6.415 15 N -0.340 5.340 16 C 0.413 3.587 17 O -0.474 6.474 18 C -0.154 4.154 19 C -0.164 4.164 20 C 0.054 3.946 21 N -0.319 5.319 22 C -0.373 4.373 23 H 0.106 0.894 24 C -0.249 4.249 25 N -0.587 5.587 26 Si 0.790 3.210 27 H -0.216 1.216 28 H -0.237 1.237 29 H -0.185 1.185 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.247 0.753 34 H 0.131 0.869 35 H 0.180 0.820 36 H 0.127 0.873 37 H 0.144 0.856 38 H 0.132 0.868 39 H 0.172 0.828 40 H 0.266 0.734 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.009 0.991 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -9.818 -6.489 -17.155 20.803 hybrid contribution 0.806 -0.531 1.382 1.686 sum -9.012 -7.020 -15.773 19.475 Atomic orbital electron populations 1.21694 0.93543 1.02227 1.00869 1.20854 0.95022 0.93097 0.86037 0.95725 1.21228 0.92062 0.83935 0.98614 0.90029 1.45899 1.61310 1.18029 1.09424 1.21557 0.78737 0.88624 0.83178 1.90646 1.51379 1.68223 1.35562 1.21503 1.06207 0.91821 0.82151 1.46712 1.17473 1.55479 1.13185 1.22086 0.86296 1.05444 0.87443 1.22386 0.99970 0.97479 0.99246 1.21632 0.80477 0.81896 0.84239 1.90774 1.69868 1.60913 1.19897 1.44257 1.36530 1.45822 1.07430 1.15749 0.82760 0.78501 0.81708 1.90995 1.39649 1.59700 1.57054 1.21711 0.96513 1.00051 0.97161 1.21934 0.99331 0.99145 0.96015 1.20554 0.83650 0.95568 0.94817 1.44356 1.02724 1.65264 1.19597 1.19577 0.95399 1.35942 0.86343 0.89368 1.25813 0.98876 1.01150 0.99023 1.70182 1.25336 1.46627 1.16568 0.85366 0.79388 0.78105 0.78157 1.21647 1.23694 1.18531 0.91627 0.93685 0.91516 0.75266 0.86864 0.81982 0.87315 0.85608 0.86793 0.82809 0.73388 0.91958 0.93458 0.92797 0.92844 0.92588 0.99127 0.94656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.76 7.72 71.98 0.56 -3.20 16 2 C 0.16 5.55 3.20 44.98 0.14 5.69 16 3 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 4 C 0.15 4.64 2.32 45.07 0.10 4.75 16 5 H 0.08 2.51 7.58 -2.39 -0.02 2.49 16 6 N -0.70 -18.79 3.47 -442.17 -1.53 -20.33 16 7 C 0.49 12.44 7.86 87.66 0.69 13.13 16 8 O -0.58 -18.18 16.10 -3.03 -0.05 -18.23 16 9 C 0.11 1.89 5.84 85.63 0.50 2.39 16 10 N -0.59 -10.19 2.28 -845.00 -1.93 -12.11 16 11 C 0.11 0.89 6.60 86.52 0.57 1.46 16 12 C -0.15 -1.59 6.30 30.00 0.19 -1.40 16 13 C 0.53 9.70 7.76 87.73 0.68 10.38 16 14 O -0.54 -13.24 17.93 -2.89 -0.05 -13.30 16 15 N -0.67 -13.50 5.18 -441.65 -2.29 -15.79 16 16 C 0.71 16.85 8.22 179.34 1.47 18.33 16 17 O -0.60 -19.13 16.57 -3.86 -0.06 -19.19 16 18 C -0.12 -3.94 5.58 30.63 0.17 -3.77 16 19 C -0.13 -4.69 5.93 30.67 0.18 -4.50 16 20 C 0.18 8.20 5.29 86.36 0.46 8.66 16 21 N -0.60 -25.89 2.65 -675.20 -1.79 -27.68 16 22 C -0.24 -11.37 8.61 84.03 0.72 -10.65 16 23 H 0.09 3.79 6.20 -2.91 -0.02 3.77 16 24 C -0.05 -2.75 4.96 84.86 0.42 -2.33 16 25 N -0.94 -52.99 11.14 21.65 0.24 -52.75 16 26 Si 0.96 41.42 29.58 68.60 2.03 43.45 16 27 H -0.29 -12.43 7.11 99.48 0.71 -11.73 16 28 H -0.31 -14.11 7.11 99.48 0.71 -13.40 16 29 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 30 H 0.06 1.80 6.38 -2.39 -0.02 1.79 16 31 H 0.04 1.52 7.66 -2.38 -0.02 1.50 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.41 11.10 7.77 -92.71 -0.72 10.38 16 34 H 0.11 2.26 7.27 -2.39 -0.02 2.24 16 35 H 0.16 1.27 8.06 -2.39 -0.02 1.25 16 36 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 37 H 0.13 0.57 8.01 -2.39 -0.02 0.55 16 38 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.15 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.43 8.01 8.86 -92.71 -0.82 7.19 16 41 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.05 2.02 7.53 -2.39 -0.02 2.00 16 44 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.06 2.93 6.06 -2.39 -0.01 2.91 16 46 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 47 H 0.24 13.64 8.31 -92.71 -0.77 12.87 16 Total: -1.00 -73.60 375.34 0.90 -72.69 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: -0.52 Total: 24.30 kcal Atomic # 6 Polarization: 32.08 SS G_CDS: 6.86 Total: 38.94 kcal Atomic # 7 Polarization: -121.36 SS G_CDS: -7.30 Total: -128.66 kcal Atomic # 8 Polarization: -50.56 SS G_CDS: -0.16 Total: -50.72 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -73.60 0.90 -72.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994170049.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.438 kcal (2) G-P(sol) polarization free energy of solvation -73.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds