Wall clock time and date at job start Tue Mar 31 2020 21:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08994 * 109.70178 * 2 1 4 4 C 1.53195 * 109.58582 * 120.35846 * 2 1 3 5 5 H 1.08998 * 109.49764 * 54.43596 * 4 2 1 6 6 N 1.46500 * 109.49705 * 294.37194 * 4 2 1 7 7 C 1.34778 * 120.00032 * 155.00342 * 6 4 2 8 8 O 1.21275 * 119.99885 * 359.97438 * 7 6 4 9 9 C 1.50700 * 119.99780 * 180.02562 * 7 6 4 10 10 N 1.46503 * 109.47074 * 179.97438 * 9 7 6 11 11 C 1.46412 * 119.53630 * 89.99185 * 10 9 7 12 12 C 1.53043 * 109.50855 * 144.17356 * 11 10 9 13 13 C 1.50787 * 109.19257 * 46.70163 * 12 11 10 14 14 O 1.21241 * 120.01541 * 145.73944 * 13 12 11 15 15 N 1.34554 * 119.96594 * 325.75965 * 13 12 11 16 16 C 1.34293 * 119.53533 * 270.02130 * 10 9 7 17 17 O 1.21542 * 119.20913 * 5.64696 * 16 10 9 18 18 C 1.53035 * 109.31183 * 174.42058 * 4 2 1 19 19 C 1.53043 * 109.54020 * 298.63636 * 18 4 2 20 20 C 1.53184 * 109.31344 * 61.36501 * 19 18 4 21 21 N 1.46925 * 109.58569 * 239.64390 * 2 1 3 22 22 C 1.36937 * 120.62924 * 6.58796 * 21 2 1 23 23 H 1.08000 * 120.00225 * 330.15373 * 22 21 2 24 24 C 1.38807 * 120.00112 * 150.16191 * 22 21 2 25 25 N 1.31627 * 120.00129 * 344.50289 * 24 22 21 26 26 Si 1.86803 * 120.00388 * 164.50538 * 24 22 21 27 27 H 1.48497 * 109.47118 * 59.99560 * 26 24 22 28 28 H 1.48495 * 109.47316 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.46907 * 299.99709 * 26 24 22 30 30 H 1.08998 * 109.46770 * 299.64376 * 1 2 3 31 31 H 1.08998 * 109.47134 * 59.64361 * 1 2 3 32 32 H 1.08996 * 109.46585 * 179.64336 * 1 2 3 33 33 H 0.97006 * 120.00140 * 335.00368 * 6 4 2 34 34 H 1.08998 * 109.47752 * 59.99854 * 9 7 6 35 35 H 1.09002 * 109.46942 * 299.99389 * 9 7 6 36 36 H 1.08998 * 109.46640 * 264.18344 * 11 10 9 37 37 H 1.09000 * 109.45905 * 24.16864 * 11 10 9 38 38 H 1.08994 * 109.51828 * 166.60674 * 12 11 10 39 39 H 1.08999 * 109.52266 * 286.78408 * 12 11 10 40 40 H 0.97000 * 119.50612 * 184.45829 * 15 13 12 41 41 H 1.09008 * 109.45960 * 58.65529 * 18 4 2 42 42 H 1.08999 * 109.46044 * 178.61353 * 18 4 2 43 43 H 1.09000 * 109.49205 * 301.40855 * 19 18 4 44 44 H 1.08997 * 109.49705 * 181.31852 * 19 18 4 45 45 H 1.09000 * 109.58565 * 185.58185 * 20 19 18 46 46 H 1.08997 * 109.70489 * 65.22331 * 20 19 18 47 47 H 0.96998 * 120.00241 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7295 1.2454 5 1 1.6026 -1.7251 1.2916 6 7 1.6706 0.0266 2.4435 7 6 1.5473 -0.6050 3.6277 8 8 1.7447 -1.7993 3.7014 9 6 1.1631 0.1727 4.8600 10 7 1.0954 -0.7343 6.0085 11 6 2.2927 -0.9623 6.8198 12 6 1.8921 -1.1240 8.2880 13 6 0.7246 -2.0736 8.3816 14 8 0.6224 -2.8171 9.3338 15 7 -0.2034 -2.0958 7.4076 16 6 -0.0639 -1.3454 6.3021 17 8 -1.0096 -1.2163 5.5496 18 6 3.5675 -0.8481 1.1701 19 6 3.9570 -1.6658 -0.0636 20 6 3.4652 -0.9470 -1.3237 21 7 2.0226 -0.6996 -1.1945 22 6 1.1537 -1.1134 -2.1686 23 1 0.1399 -1.3809 -1.9097 24 6 1.5759 -1.1892 -3.4887 25 7 2.6865 -0.5882 -3.8601 26 14 0.5680 -2.1442 -4.7384 27 1 -0.7926 -1.5565 -4.8301 28 1 1.2292 -2.0728 -6.0661 29 1 0.4666 -3.5631 -4.3122 30 1 -0.3633 0.5083 0.8932 31 1 -0.3633 0.5193 -0.8868 32 1 -0.3632 -1.0276 -0.0064 33 1 1.5124 0.9818 2.3845 34 1 0.1893 0.6380 4.7072 35 1 1.9089 0.9446 5.0497 36 1 2.7956 -1.8672 6.4788 37 1 2.9671 -0.1119 6.7188 38 1 2.7336 -1.5248 8.8530 39 1 1.6067 -0.1546 8.6965 40 1 -0.9851 -2.6619 7.5053 41 1 4.0062 0.1473 1.0993 42 1 3.9378 -1.3449 2.0668 43 1 3.4984 -2.6529 -0.0053 44 1 5.0412 -1.7696 -0.1037 45 1 3.6519 -1.5718 -2.1972 46 1 3.9902 0.0018 -1.4342 47 1 2.9813 -0.6408 -4.7826 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994170134.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:56 Heat of formation + Delta-G solvation = -69.509704 kcal Electronic energy + Delta-G solvation = -30389.249211 eV Core-core repulsion = 26187.043921 eV Total energy + Delta-G solvation = -4202.205291 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.98241 -39.90445 -39.07994 -37.69032 -36.46287 -34.94448 -34.30975 -32.63785 -31.99623 -31.62019 -29.56075 -27.82303 -26.06484 -25.45887 -24.99024 -23.46267 -22.21350 -20.72093 -20.48937 -19.67941 -19.13476 -18.67041 -18.05854 -17.42995 -16.67133 -16.38252 -16.09750 -15.45494 -15.23332 -15.00225 -14.90379 -14.77826 -14.64968 -13.94856 -13.78935 -13.70403 -13.59073 -13.31765 -13.02291 -12.84102 -12.59392 -12.39978 -12.02436 -11.70237 -11.54325 -11.10952 -11.03397 -10.92274 -10.75759 -10.61313 -10.59029 -10.53408 -10.32981 -10.24147 -10.09368 -10.05682 -9.75290 -9.45374 -9.07376 -8.70876 -8.46147 -6.68090 -5.80938 -3.25553 1.37947 1.92056 2.63198 2.73420 2.87123 3.36481 3.38825 3.43748 3.46823 3.91296 4.06294 4.42694 4.47962 4.50998 4.75316 4.82622 4.90587 5.04874 5.25645 5.28044 5.38032 5.49613 5.57856 5.59108 5.73765 5.76262 5.93765 6.06309 6.08425 6.19785 6.32708 6.41110 6.50481 6.59383 6.69215 6.72134 6.82092 6.98686 6.99303 7.06680 7.14409 7.37236 7.63856 7.67516 7.81013 7.83373 8.35569 8.44504 9.19018 9.81497 10.37808 11.27836 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023633 B = 0.002478 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.503265 B =11297.804771 C =11762.157777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.168 3.832 3 H 0.028 0.972 4 C 0.131 3.869 5 H 0.085 0.915 6 N -0.716 5.716 7 C 0.494 3.506 8 O -0.533 6.533 9 C 0.109 3.891 10 N -0.599 5.599 11 C 0.109 3.891 12 C -0.157 4.157 13 C 0.524 3.476 14 O -0.505 6.505 15 N -0.674 5.674 16 C 0.714 3.286 17 O -0.548 6.548 18 C -0.115 4.115 19 C -0.141 4.141 20 C 0.170 3.830 21 N -0.582 5.582 22 C -0.253 4.253 23 H 0.070 0.930 24 C 0.005 3.995 25 N -0.903 5.903 26 Si 0.902 3.098 27 H -0.282 1.282 28 H -0.291 1.291 29 H -0.283 1.283 30 H 0.039 0.961 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.396 0.604 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.127 0.873 39 H 0.115 0.885 40 H 0.427 0.573 41 H 0.054 0.946 42 H 0.048 0.952 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.087 0.913 46 H 0.019 0.981 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.649 5.547 22.655 23.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.061 3.939 3 H 0.045 0.955 4 C 0.026 3.974 5 H 0.103 0.897 6 N -0.367 5.367 7 C 0.277 3.723 8 O -0.409 6.409 9 C -0.018 4.018 10 N -0.335 5.335 11 C -0.013 4.013 12 C -0.197 4.197 13 C 0.312 3.688 14 O -0.378 6.378 15 N -0.343 5.343 16 C 0.416 3.584 17 O -0.421 6.421 18 C -0.153 4.153 19 C -0.180 4.180 20 C 0.044 3.956 21 N -0.305 5.305 22 C -0.383 4.383 23 H 0.087 0.913 24 C -0.193 4.193 25 N -0.547 5.547 26 Si 0.732 3.268 27 H -0.208 1.208 28 H -0.217 1.217 29 H -0.210 1.210 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.230 0.770 34 H 0.136 0.864 35 H 0.132 0.868 36 H 0.101 0.899 37 H 0.122 0.878 38 H 0.145 0.855 39 H 0.133 0.867 40 H 0.268 0.732 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.105 0.895 46 H 0.038 0.962 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.460 4.479 22.592 23.078 hybrid contribution -0.732 -0.294 -0.727 1.073 sum 0.728 4.185 21.864 22.273 Atomic orbital electron populations 1.21816 0.95587 1.01774 1.00236 1.20562 0.93286 0.93490 0.86609 0.95482 1.21796 0.94983 0.96915 0.83744 0.89710 1.46097 1.70073 1.12181 1.08348 1.20929 0.77640 0.88661 0.85023 1.90709 1.49792 1.14857 1.85540 1.21385 1.05615 0.91153 0.83601 1.46503 1.08909 1.48059 1.30056 1.21697 0.87176 1.04590 0.87870 1.22269 0.97737 1.00941 0.98767 1.20971 0.83324 0.83140 0.81361 1.90800 1.75672 1.39695 1.31623 1.44245 1.26314 1.45060 1.18672 1.15510 0.83617 0.78353 0.80956 1.91035 1.38667 1.63298 1.49101 1.21743 0.95392 0.99956 0.98236 1.22183 0.99179 0.99739 0.96933 1.20818 0.83159 0.97167 0.94415 1.44024 1.03106 1.65092 1.18286 1.19121 0.95218 1.37914 0.86014 0.91275 1.25080 0.97891 0.99414 0.96962 1.70015 1.24127 1.43685 1.16832 0.86383 0.79604 0.80308 0.80549 1.20845 1.21652 1.20974 0.94215 0.91788 0.92703 0.77005 0.86401 0.86793 0.89918 0.87806 0.85485 0.86709 0.73205 0.92765 0.93363 0.92566 0.93035 0.89525 0.96245 0.93594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 7.84 37.16 0.29 -2.23 16 2 C 0.17 3.28 3.03 -67.59 -0.21 3.08 16 3 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 4 C 0.13 2.27 2.00 -67.81 -0.14 2.13 16 5 H 0.08 1.76 7.58 -51.93 -0.39 1.37 16 6 N -0.72 -9.27 4.57 -53.69 -0.25 -9.51 16 7 C 0.49 6.48 7.86 -10.98 -0.09 6.39 16 8 O -0.53 -9.42 16.09 5.56 0.09 -9.33 16 9 C 0.11 0.90 5.82 -5.19 -0.03 0.87 16 10 N -0.60 -5.32 2.28 -181.15 -0.41 -5.73 16 11 C 0.11 0.59 6.64 -4.07 -0.03 0.57 16 12 C -0.16 -0.69 6.28 -27.82 -0.17 -0.87 16 13 C 0.52 4.53 7.76 -11.04 -0.09 4.45 16 14 O -0.51 -5.98 17.93 5.59 0.10 -5.88 16 15 N -0.67 -6.44 5.18 -16.02 -0.08 -6.52 16 16 C 0.71 8.21 8.21 -87.74 -0.72 7.49 16 17 O -0.55 -8.36 16.66 5.33 0.09 -8.27 16 18 C -0.11 -1.94 5.46 -26.69 -0.15 -2.09 16 19 C -0.14 -2.69 6.08 -26.61 -0.16 -2.86 16 20 C 0.17 3.93 5.28 -3.71 -0.02 3.91 16 21 N -0.58 -13.95 2.99 -164.78 -0.49 -14.44 16 22 C -0.25 -6.70 8.58 -15.06 -0.13 -6.83 16 23 H 0.07 1.81 6.23 -52.49 -0.33 1.48 16 24 C 0.01 0.15 4.94 -17.43 -0.09 0.06 16 25 N -0.90 -25.56 11.23 55.49 0.62 -24.94 16 26 Si 0.90 21.52 29.58 -169.99 -5.03 16.49 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 30 H 0.04 0.60 7.78 -51.93 -0.40 0.20 16 31 H 0.06 1.26 7.67 -51.93 -0.40 0.86 16 32 H 0.05 1.09 7.40 -51.93 -0.38 0.71 16 33 H 0.40 3.89 8.61 -40.82 -0.35 3.54 16 34 H 0.12 0.95 7.43 -51.93 -0.39 0.57 16 35 H 0.11 0.44 7.82 -51.93 -0.41 0.03 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.10 0.24 7.79 -51.93 -0.40 -0.16 16 38 H 0.13 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.43 3.80 8.86 -40.82 -0.36 3.44 16 41 H 0.05 0.87 8.14 -51.92 -0.42 0.44 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.09 2.26 6.15 -51.93 -0.32 1.94 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 378.52 15.07 5.70 5.70 Total: -1.00 -36.36 378.52 -8.45 -44.81 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -7.08 Total: 3.53 kcal Atomic # 6 Polarization: 15.80 SS G_CDS: -1.72 Total: 14.08 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: -0.61 Total: -61.14 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: 0.28 Total: -23.47 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.36 -8.45 -44.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994170134.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.700 kcal (2) G-P(sol) polarization free energy of solvation -36.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds