Wall clock time and date at job start Tue Mar 31 2020 21:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08994 * 109.70178 * 2 1 4 4 C 1.53195 * 109.58582 * 120.35846 * 2 1 3 5 5 H 1.08998 * 109.49764 * 54.43596 * 4 2 1 6 6 N 1.46500 * 109.49705 * 294.37194 * 4 2 1 7 7 C 1.34778 * 120.00032 * 155.00342 * 6 4 2 8 8 O 1.21275 * 119.99885 * 359.97438 * 7 6 4 9 9 C 1.50700 * 119.99780 * 180.02562 * 7 6 4 10 10 N 1.46503 * 109.47074 * 179.97438 * 9 7 6 11 11 C 1.46412 * 119.53630 * 89.99185 * 10 9 7 12 12 C 1.53043 * 109.50855 * 144.17356 * 11 10 9 13 13 C 1.50787 * 109.19257 * 46.70163 * 12 11 10 14 14 O 1.21241 * 120.01541 * 145.73944 * 13 12 11 15 15 N 1.34554 * 119.96594 * 325.75965 * 13 12 11 16 16 C 1.34293 * 119.53533 * 270.02130 * 10 9 7 17 17 O 1.21542 * 119.20913 * 5.64696 * 16 10 9 18 18 C 1.53035 * 109.31183 * 174.42058 * 4 2 1 19 19 C 1.53043 * 109.54020 * 298.63636 * 18 4 2 20 20 C 1.53184 * 109.31344 * 61.36501 * 19 18 4 21 21 N 1.46925 * 109.58569 * 239.64390 * 2 1 3 22 22 C 1.36937 * 120.62924 * 6.58796 * 21 2 1 23 23 H 1.08000 * 120.00225 * 330.15373 * 22 21 2 24 24 C 1.38807 * 120.00112 * 150.16191 * 22 21 2 25 25 N 1.31627 * 120.00129 * 344.50289 * 24 22 21 26 26 Si 1.86803 * 120.00388 * 164.50538 * 24 22 21 27 27 H 1.48497 * 109.47118 * 59.99560 * 26 24 22 28 28 H 1.48495 * 109.47316 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.46907 * 299.99709 * 26 24 22 30 30 H 1.08998 * 109.46770 * 299.64376 * 1 2 3 31 31 H 1.08998 * 109.47134 * 59.64361 * 1 2 3 32 32 H 1.08996 * 109.46585 * 179.64336 * 1 2 3 33 33 H 0.97006 * 120.00140 * 335.00368 * 6 4 2 34 34 H 1.08998 * 109.47752 * 59.99854 * 9 7 6 35 35 H 1.09002 * 109.46942 * 299.99389 * 9 7 6 36 36 H 1.08998 * 109.46640 * 264.18344 * 11 10 9 37 37 H 1.09000 * 109.45905 * 24.16864 * 11 10 9 38 38 H 1.08994 * 109.51828 * 166.60674 * 12 11 10 39 39 H 1.08999 * 109.52266 * 286.78408 * 12 11 10 40 40 H 0.97000 * 119.50612 * 184.45829 * 15 13 12 41 41 H 1.09008 * 109.45960 * 58.65529 * 18 4 2 42 42 H 1.08999 * 109.46044 * 178.61353 * 18 4 2 43 43 H 1.09000 * 109.49205 * 301.40855 * 19 18 4 44 44 H 1.08997 * 109.49705 * 181.31852 * 19 18 4 45 45 H 1.09000 * 109.58565 * 185.58185 * 20 19 18 46 46 H 1.08997 * 109.70489 * 65.22331 * 20 19 18 47 47 H 0.96998 * 120.00241 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7295 1.2454 5 1 1.6026 -1.7251 1.2916 6 7 1.6706 0.0266 2.4435 7 6 1.5473 -0.6050 3.6277 8 8 1.7447 -1.7993 3.7014 9 6 1.1631 0.1727 4.8600 10 7 1.0954 -0.7343 6.0085 11 6 2.2927 -0.9623 6.8198 12 6 1.8921 -1.1240 8.2880 13 6 0.7246 -2.0736 8.3816 14 8 0.6224 -2.8171 9.3338 15 7 -0.2034 -2.0958 7.4076 16 6 -0.0639 -1.3454 6.3021 17 8 -1.0096 -1.2163 5.5496 18 6 3.5675 -0.8481 1.1701 19 6 3.9570 -1.6658 -0.0636 20 6 3.4652 -0.9470 -1.3237 21 7 2.0226 -0.6996 -1.1945 22 6 1.1537 -1.1134 -2.1686 23 1 0.1399 -1.3809 -1.9097 24 6 1.5759 -1.1892 -3.4887 25 7 2.6865 -0.5882 -3.8601 26 14 0.5680 -2.1442 -4.7384 27 1 -0.7926 -1.5565 -4.8301 28 1 1.2292 -2.0728 -6.0661 29 1 0.4666 -3.5631 -4.3122 30 1 -0.3633 0.5083 0.8932 31 1 -0.3633 0.5193 -0.8868 32 1 -0.3632 -1.0276 -0.0064 33 1 1.5124 0.9818 2.3845 34 1 0.1893 0.6380 4.7072 35 1 1.9089 0.9446 5.0497 36 1 2.7956 -1.8672 6.4788 37 1 2.9671 -0.1119 6.7188 38 1 2.7336 -1.5248 8.8530 39 1 1.6067 -0.1546 8.6965 40 1 -0.9851 -2.6619 7.5053 41 1 4.0062 0.1473 1.0993 42 1 3.9378 -1.3449 2.0668 43 1 3.4984 -2.6529 -0.0053 44 1 5.0412 -1.7696 -0.1037 45 1 3.6519 -1.5718 -2.1972 46 1 3.9902 0.0018 -1.4342 47 1 2.9813 -0.6408 -4.7826 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994170134.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:55 Heat of formation + Delta-G solvation = -97.623814 kcal Electronic energy + Delta-G solvation = -30390.468331 eV Core-core repulsion = 26187.043921 eV Total energy + Delta-G solvation = -4203.424410 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.71626 -41.00394 -40.01978 -39.12178 -37.24288 -35.89678 -35.65135 -34.24795 -33.41137 -32.51686 -31.09110 -28.83927 -27.59327 -26.79865 -25.98837 -24.38155 -23.61120 -22.32057 -21.59736 -21.10425 -20.01805 -19.37098 -18.81649 -18.43448 -18.14850 -17.45322 -17.27472 -16.86699 -16.27336 -16.09434 -15.79417 -15.69134 -15.59231 -15.44875 -15.40494 -14.94335 -14.67920 -14.52132 -14.27536 -14.11803 -13.54024 -13.35232 -13.23306 -12.99260 -12.79962 -12.70868 -12.54003 -12.51554 -12.36450 -12.02509 -11.86826 -11.81165 -11.74087 -11.60600 -11.37930 -11.37651 -11.20643 -11.04841 -10.52247 -9.94103 -9.90466 -8.63015 -7.86130 -5.31815 0.66177 1.22330 1.45434 1.48150 1.53864 1.71914 1.94224 2.19111 2.35329 2.55418 3.29318 3.41656 3.62398 3.65942 3.83533 3.96062 4.03287 4.10454 4.18576 4.24684 4.38942 4.43830 4.48784 4.55562 4.61968 4.64762 4.78776 4.88167 4.90938 4.94812 4.95338 5.06598 5.11156 5.15856 5.27154 5.32313 5.45045 5.46347 5.53003 5.63879 5.70694 5.78825 6.28299 6.42421 6.44451 6.67780 7.03549 7.17186 7.38175 7.87954 8.38489 9.20362 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023633 B = 0.002478 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.503265 B =11297.804771 C =11762.157777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.165 3.835 3 H 0.041 0.959 4 C 0.148 3.852 5 H 0.045 0.955 6 N -0.705 5.705 7 C 0.490 3.510 8 O -0.583 6.583 9 C 0.115 3.885 10 N -0.595 5.595 11 C 0.105 3.895 12 C -0.144 4.144 13 C 0.521 3.479 14 O -0.543 6.543 15 N -0.676 5.676 16 C 0.710 3.290 17 O -0.595 6.595 18 C -0.104 4.104 19 C -0.131 4.131 20 C 0.176 3.824 21 N -0.602 5.602 22 C -0.255 4.255 23 H 0.067 0.933 24 C -0.046 4.046 25 N -0.931 5.931 26 Si 0.957 3.043 27 H -0.275 1.275 28 H -0.293 1.293 29 H -0.285 1.285 30 H 0.076 0.924 31 H 0.047 0.953 32 H 0.032 0.968 33 H 0.416 0.584 34 H 0.124 0.876 35 H 0.175 0.825 36 H 0.065 0.935 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.423 0.577 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.037 0.963 44 H 0.073 0.927 45 H 0.050 0.950 46 H 0.008 0.992 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.614 7.714 25.077 26.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.059 3.941 3 H 0.058 0.942 4 C 0.041 3.959 5 H 0.063 0.937 6 N -0.357 5.357 7 C 0.277 3.723 8 O -0.463 6.463 9 C -0.011 4.011 10 N -0.330 5.330 11 C -0.016 4.016 12 C -0.183 4.183 13 C 0.311 3.689 14 O -0.418 6.418 15 N -0.344 5.344 16 C 0.412 3.588 17 O -0.472 6.472 18 C -0.143 4.143 19 C -0.171 4.171 20 C 0.051 3.949 21 N -0.326 5.326 22 C -0.385 4.385 23 H 0.084 0.916 24 C -0.241 4.241 25 N -0.577 5.577 26 Si 0.786 3.214 27 H -0.201 1.201 28 H -0.219 1.219 29 H -0.211 1.211 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.253 0.747 34 H 0.142 0.858 35 H 0.192 0.808 36 H 0.083 0.917 37 H 0.168 0.832 38 H 0.166 0.834 39 H 0.164 0.836 40 H 0.264 0.736 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.056 0.944 44 H 0.092 0.908 45 H 0.068 0.932 46 H 0.026 0.974 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.442 6.694 25.062 26.056 hybrid contribution -1.048 -0.993 -1.421 2.026 sum 1.395 5.701 23.641 24.359 Atomic orbital electron populations 1.21729 0.94952 1.00596 1.01269 1.20737 0.93872 0.93764 0.85760 0.94184 1.21210 0.94981 0.95142 0.84579 0.93661 1.45856 1.69896 1.12906 1.07081 1.21880 0.76086 0.88331 0.86035 1.90702 1.51897 1.17338 1.86314 1.21624 1.07646 0.91010 0.80869 1.46707 1.08924 1.47189 1.30139 1.22009 0.86223 1.05867 0.87518 1.22375 0.96220 1.01093 0.98652 1.21873 0.83761 0.83081 0.80153 1.90787 1.76610 1.41484 1.32935 1.44322 1.26677 1.44657 1.18721 1.15778 0.84055 0.78245 0.80757 1.90997 1.40537 1.65085 1.50608 1.21642 0.95009 1.00506 0.97112 1.22026 1.00288 0.98581 0.96199 1.20622 0.83137 0.96213 0.94965 1.44263 1.03154 1.65965 1.19189 1.19356 0.95439 1.37002 0.86745 0.91566 1.25718 0.99089 1.00718 0.98601 1.70143 1.25573 1.45255 1.16699 0.85496 0.78571 0.78928 0.78386 1.20111 1.21879 1.21132 0.90523 0.93369 0.94905 0.74668 0.85844 0.80821 0.91664 0.83179 0.83378 0.83635 0.73611 0.90865 0.92377 0.94425 0.90810 0.93175 0.97357 0.94169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.64 7.84 71.99 0.56 -4.08 16 2 C 0.17 6.30 3.03 44.98 0.14 6.44 16 3 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 4 C 0.15 4.94 2.00 45.07 0.09 5.03 16 5 H 0.05 1.90 7.58 -2.39 -0.02 1.88 16 6 N -0.70 -16.18 4.57 -442.18 -2.02 -18.20 16 7 C 0.49 11.55 7.86 87.66 0.69 12.23 16 8 O -0.58 -20.00 16.09 -3.01 -0.05 -20.05 16 9 C 0.11 1.40 5.82 85.63 0.50 1.90 16 10 N -0.59 -8.68 2.28 -845.58 -1.93 -10.61 16 11 C 0.10 0.69 6.64 86.41 0.57 1.27 16 12 C -0.14 -0.71 6.28 29.89 0.19 -0.52 16 13 C 0.52 8.27 7.76 87.72 0.68 8.95 16 14 O -0.54 -12.55 17.93 -2.91 -0.05 -12.60 16 15 N -0.68 -12.63 5.18 -441.66 -2.29 -14.92 16 16 C 0.71 15.51 8.21 179.34 1.47 16.99 16 17 O -0.59 -18.07 16.66 -3.85 -0.06 -18.14 16 18 C -0.10 -3.32 5.46 30.62 0.17 -3.15 16 19 C -0.13 -4.98 6.08 30.67 0.19 -4.80 16 20 C 0.18 8.30 5.28 86.36 0.46 8.75 16 21 N -0.60 -29.25 2.99 -675.23 -2.02 -31.26 16 22 C -0.26 -13.80 8.58 84.03 0.72 -13.07 16 23 H 0.07 3.55 6.23 -2.91 -0.02 3.53 16 24 C -0.05 -2.53 4.94 84.86 0.42 -2.11 16 25 N -0.93 -54.13 11.23 21.65 0.24 -53.89 16 26 Si 0.96 45.21 29.58 68.60 2.03 47.24 16 27 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 28 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 29 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 30 H 0.08 2.16 7.78 -2.39 -0.02 2.15 16 31 H 0.05 1.88 7.67 -2.39 -0.02 1.86 16 32 H 0.03 1.31 7.40 -2.39 -0.02 1.29 16 33 H 0.42 6.40 8.61 -92.70 -0.80 5.60 16 34 H 0.12 1.51 7.43 -2.39 -0.02 1.50 16 35 H 0.17 0.09 7.82 -2.39 -0.02 0.07 16 36 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.15 -0.32 7.79 -2.39 -0.02 -0.34 16 38 H 0.15 0.21 8.14 -2.39 -0.02 0.19 16 39 H 0.15 -0.07 8.14 -2.39 -0.02 -0.09 16 40 H 0.42 7.87 8.86 -92.71 -0.82 7.05 16 41 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 42 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 45 H 0.05 2.71 6.15 -2.39 -0.01 2.70 16 46 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 47 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -85.25 378.52 0.09 -85.16 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -0.60 Total: 13.45 kcal Atomic # 6 Polarization: 26.98 SS G_CDS: 6.84 Total: 33.82 kcal Atomic # 7 Polarization: -120.86 SS G_CDS: -8.01 Total: -128.88 kcal Atomic # 8 Polarization: -50.62 SS G_CDS: -0.16 Total: -50.79 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -85.25 0.09 -85.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994170134.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.468 kcal (2) G-P(sol) polarization free energy of solvation -85.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds