Wall clock time and date at job start Tue Mar 31 2020 21:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.58750 * 2 1 4 4 C 1.53188 * 109.58833 * 239.70905 * 2 1 3 5 5 H 1.09005 * 109.49370 * 65.62909 * 4 2 1 6 6 N 1.46498 * 109.52820 * 305.54833 * 4 2 1 7 7 C 1.34780 * 120.00473 * 155.14096 * 6 4 2 8 8 O 1.21283 * 119.99175 * 0.02562 * 7 6 4 9 9 C 1.50692 * 120.00303 * 180.02562 * 7 6 4 10 10 N 1.46500 * 109.46998 * 180.02562 * 9 7 6 11 11 C 1.47307 * 126.69186 * 269.70713 * 10 9 7 12 12 C 1.51583 * 103.59478 * 179.97438 * 11 10 9 13 13 O 1.21230 * 127.15651 * 180.15464 * 12 11 10 14 14 N 1.34768 * 105.68240 * 0.33529 * 12 11 10 15 15 C 1.46501 * 124.17724 * 179.82346 * 14 12 11 16 16 C 1.33790 * 111.64432 * 359.78009 * 14 12 11 17 17 O 1.21542 * 123.76816 * 180.02562 * 16 14 12 18 18 C 1.53035 * 109.31507 * 185.57947 * 4 2 1 19 19 C 1.53043 * 109.53588 * 61.36525 * 18 4 2 20 20 C 1.53190 * 109.31377 * 298.63445 * 19 18 4 21 21 N 1.46924 * 108.77316 * 54.63815 * 20 19 18 22 22 C 1.36941 * 120.63120 * 126.40937 * 21 20 19 23 23 H 1.07996 * 119.99698 * 209.51470 * 22 21 20 24 24 C 1.38815 * 119.99793 * 29.52407 * 22 21 20 25 25 N 1.31612 * 120.00169 * 16.12433 * 24 22 21 26 26 Si 1.86799 * 119.99538 * 196.13256 * 24 22 21 27 27 H 1.48501 * 109.47488 * 94.01896 * 26 24 22 28 28 H 1.48502 * 109.46661 * 214.01954 * 26 24 22 29 29 H 1.48495 * 109.47274 * 334.01316 * 26 24 22 30 30 H 1.08996 * 109.47022 * 180.28622 * 1 2 3 31 31 H 1.08991 * 109.47177 * 300.29089 * 1 2 3 32 32 H 1.09001 * 109.46617 * 60.28358 * 1 2 3 33 33 H 0.97000 * 119.99593 * 335.14939 * 6 4 2 34 34 H 1.09004 * 109.47078 * 299.99931 * 9 7 6 35 35 H 1.08999 * 109.47358 * 60.00190 * 9 7 6 36 36 H 1.09004 * 110.59698 * 298.56882 * 11 10 9 37 37 H 1.08995 * 110.59720 * 61.50716 * 11 10 9 38 38 H 1.09001 * 109.46783 * 269.95793 * 15 14 12 39 39 H 1.09006 * 109.47166 * 29.95261 * 15 14 12 40 40 H 1.08993 * 109.47518 * 149.95256 * 15 14 12 41 41 H 1.09005 * 109.46146 * 301.34923 * 18 4 2 42 42 H 1.09000 * 109.46473 * 181.38549 * 18 4 2 43 43 H 1.09004 * 109.49690 * 58.59215 * 19 18 4 44 44 H 1.09001 * 109.49826 * 178.68563 * 19 18 4 45 45 H 1.08999 * 109.58443 * 174.42248 * 20 19 18 46 46 H 1.09000 * 109.58990 * 294.84873 * 20 19 18 47 47 H 0.97002 * 119.99761 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 -1.2462 5 1 1.7661 -0.1643 -2.1370 6 7 1.4515 -2.0664 -1.3103 7 6 1.3315 -2.6942 -2.4969 8 8 1.7142 -2.1511 -3.5116 9 6 0.7219 -4.0707 -2.5629 10 7 0.7056 -4.5314 -3.9535 11 6 -0.3758 -4.3329 -4.9338 12 6 0.1484 -5.0100 -6.1846 13 8 -0.4079 -5.0965 -7.2583 14 7 1.3597 -5.4993 -5.8536 15 6 2.2273 -6.2401 -6.7727 16 6 1.6724 -5.2241 -4.5821 17 8 2.7137 -5.5619 -4.0543 18 6 3.5675 -0.8467 -1.1710 19 6 3.9568 -1.6658 0.0617 20 6 3.4650 -0.9485 1.3227 21 7 2.0225 -0.7010 1.1937 22 6 1.1536 -1.1153 2.1677 23 1 0.1382 -1.3773 1.9095 24 6 1.5780 -1.1984 3.4868 25 7 2.6852 -0.5933 3.8612 26 14 0.5778 -2.1694 4.7302 27 1 1.1099 -3.5527 4.8218 28 1 0.6705 -1.5143 6.0597 29 1 -0.8422 -2.2127 4.2978 30 1 -0.3633 -1.0276 0.0051 31 1 -0.3633 0.5183 0.8873 32 1 -0.3632 0.5094 -0.8925 33 1 1.1457 -2.5008 -0.4987 34 1 1.3134 -4.7593 -1.9594 35 1 -0.2978 -4.0353 -2.1796 36 1 -1.2943 -4.8113 -4.5937 37 1 -0.5398 -3.2705 -5.1140 38 1 2.0057 -7.3050 -6.7026 39 1 2.0514 -5.8988 -7.7929 40 1 3.2700 -6.0676 -6.5065 41 1 4.0062 0.1486 -1.0990 42 1 3.9379 -1.3425 -2.0683 43 1 3.4982 -2.6529 0.0022 44 1 5.0411 -1.7698 0.1018 45 1 3.6517 -1.5744 2.1954 46 1 3.9902 0.0003 1.4318 47 1 2.9819 -0.6517 4.7829 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994208367.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:01 Heat of formation + Delta-G solvation = -42.719067 kcal Electronic energy + Delta-G solvation = -30858.755130 eV Core-core repulsion = 26657.711569 eV Total energy + Delta-G solvation = -4201.043561 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.50559 -39.83748 -38.80711 -37.70660 -36.28425 -35.34012 -33.99280 -32.50967 -31.83893 -30.63617 -29.32231 -27.40751 -26.91341 -26.04032 -25.04593 -22.92120 -22.13697 -21.07418 -20.74812 -20.10256 -18.80758 -17.86942 -17.69195 -16.91368 -16.76871 -16.48492 -15.86616 -15.62770 -15.19915 -14.93220 -14.59218 -14.41574 -14.35607 -14.22891 -13.96052 -13.65516 -13.50838 -13.17543 -13.01994 -12.93553 -12.87720 -12.63462 -12.20189 -11.90658 -11.33381 -11.28491 -11.12724 -11.03270 -10.77622 -10.68470 -10.56919 -10.48785 -10.17345 -10.10455 -10.05832 -10.04718 -9.71293 -9.35432 -9.05073 -8.63033 -8.51667 -6.74053 -5.87190 -3.32990 1.37828 1.77111 2.61815 2.78144 2.80397 3.30127 3.36722 3.39400 3.56379 3.77361 4.39357 4.40495 4.70867 4.84845 4.92611 4.96803 5.01756 5.09756 5.24685 5.25107 5.27192 5.33832 5.52675 5.53214 5.60157 5.70433 5.91788 6.05668 6.06758 6.16249 6.27240 6.35205 6.49245 6.62074 6.64003 6.74014 6.85383 6.89017 6.89684 7.02337 7.07520 7.33401 7.60990 7.71812 7.81955 7.91478 8.35740 8.47378 9.11706 9.74942 10.32406 11.20712 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017871 B = 0.002901 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.391457 B = 9648.782843 C = 9881.615685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.159 3.841 3 H 0.039 0.961 4 C 0.136 3.864 5 H 0.075 0.925 6 N -0.696 5.696 7 C 0.489 3.511 8 O -0.546 6.546 9 C 0.131 3.869 10 N -0.607 5.607 11 C 0.065 3.935 12 C 0.527 3.473 13 O -0.476 6.476 14 N -0.579 5.579 15 C 0.089 3.911 16 C 0.705 3.295 17 O -0.536 6.536 18 C -0.121 4.121 19 C -0.139 4.139 20 C 0.172 3.828 21 N -0.586 5.586 22 C -0.259 4.259 23 H 0.071 0.929 24 C 0.007 3.993 25 N -0.898 5.898 26 Si 0.900 3.100 27 H -0.288 1.288 28 H -0.292 1.292 29 H -0.279 1.279 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.410 0.590 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.062 0.938 42 H 0.050 0.950 43 H 0.053 0.947 44 H 0.047 0.953 45 H 0.085 0.915 46 H 0.018 0.982 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.311 -8.007 -15.150 17.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.052 3.948 3 H 0.057 0.943 4 C 0.030 3.970 5 H 0.093 0.907 6 N -0.348 5.348 7 C 0.272 3.728 8 O -0.424 6.424 9 C 0.006 3.994 10 N -0.344 5.344 11 C -0.061 4.061 12 C 0.314 3.686 13 O -0.346 6.346 14 N -0.325 5.325 15 C -0.052 4.052 16 C 0.407 3.593 17 O -0.409 6.409 18 C -0.160 4.160 19 C -0.178 4.178 20 C 0.046 3.954 21 N -0.310 5.310 22 C -0.388 4.388 23 H 0.089 0.911 24 C -0.192 4.192 25 N -0.541 5.541 26 Si 0.730 3.270 27 H -0.215 1.215 28 H -0.219 1.219 29 H -0.204 1.204 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.246 0.754 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.091 0.909 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.103 0.897 46 H 0.036 0.964 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.654 -7.823 -15.896 18.318 hybrid contribution -0.421 -0.548 1.161 1.352 sum -5.075 -8.371 -14.735 17.690 Atomic orbital electron populations 1.21774 0.95617 1.01374 1.00441 1.20717 0.93343 0.93922 0.86832 0.94347 1.21542 0.92955 0.82776 0.99751 0.90691 1.45965 1.61276 1.18745 1.08803 1.20951 0.79798 0.87738 0.84295 1.90679 1.49959 1.67033 1.34686 1.21204 1.04244 0.94651 0.79271 1.46936 1.18487 1.57093 1.11900 1.22524 0.92722 1.04456 0.86375 1.20855 0.80759 0.77431 0.89529 1.90809 1.62054 1.56746 1.25000 1.46231 1.20129 1.53046 1.13132 1.21820 0.94871 0.95961 0.92543 1.15756 0.83829 0.79008 0.80702 1.91000 1.24233 1.57539 1.68149 1.21765 0.95440 1.00444 0.98325 1.22130 0.99026 0.99515 0.97176 1.20791 0.83147 0.97158 0.94294 1.44174 1.03123 1.64751 1.18909 1.19149 0.95096 1.38368 0.86214 0.91125 1.25112 0.97820 0.99294 0.97014 1.70030 1.24235 1.43072 1.16805 0.86327 0.79716 0.79861 0.81097 1.21470 1.21877 1.20391 0.92794 0.91779 0.94264 0.75392 0.86169 0.86337 0.85764 0.85637 0.90934 0.89451 0.89160 0.91975 0.93166 0.92802 0.93458 0.89663 0.96415 0.93595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 7.72 37.16 0.29 -1.93 16 2 C 0.16 2.94 3.20 -67.60 -0.22 2.73 16 3 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 4 C 0.14 2.26 2.32 -67.82 -0.16 2.11 16 5 H 0.08 1.27 7.58 -51.93 -0.39 0.87 16 6 N -0.70 -10.28 3.47 -53.70 -0.19 -10.46 16 7 C 0.49 6.93 7.86 -10.99 -0.09 6.84 16 8 O -0.55 -9.63 16.09 5.56 0.09 -9.54 16 9 C 0.13 1.34 6.63 -5.20 -0.03 1.30 16 10 N -0.61 -6.57 2.51 -181.40 -0.45 -7.03 16 11 C 0.07 0.52 7.66 -4.32 -0.03 0.49 16 12 C 0.53 5.42 8.32 -10.55 -0.09 5.33 16 13 O -0.48 -5.87 17.76 5.60 0.10 -5.77 16 14 N -0.58 -6.36 3.00 -128.17 -0.39 -6.75 16 15 C 0.09 0.74 10.73 59.85 0.64 1.39 16 16 C 0.70 9.29 8.31 -88.02 -0.73 8.56 16 17 O -0.54 -8.92 17.15 5.33 0.09 -8.83 16 18 C -0.12 -2.11 5.58 -26.69 -0.15 -2.26 16 19 C -0.14 -2.58 5.93 -26.61 -0.16 -2.74 16 20 C 0.17 3.79 5.29 -3.71 -0.02 3.77 16 21 N -0.59 -12.79 2.65 -164.78 -0.44 -13.22 16 22 C -0.26 -6.17 8.58 -15.06 -0.13 -6.30 16 23 H 0.07 1.61 6.22 -52.49 -0.33 1.28 16 24 C 0.01 0.18 4.92 -17.43 -0.09 0.10 16 25 N -0.90 -24.48 11.25 55.49 0.62 -23.85 16 26 Si 0.90 20.06 29.58 -169.99 -5.03 15.03 16 27 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 29 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 30 H 0.05 0.85 6.37 -51.93 -0.33 0.51 16 31 H 0.06 1.16 7.66 -51.93 -0.40 0.77 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.41 6.01 7.77 -40.82 -0.32 5.69 16 34 H 0.12 1.21 8.03 -51.93 -0.42 0.79 16 35 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.13 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.63 8.00 -51.93 -0.42 0.21 16 40 H 0.09 0.77 7.86 -51.93 -0.41 0.37 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.05 1.00 7.53 -51.93 -0.39 0.61 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.09 2.13 6.14 -51.93 -0.32 1.81 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 380.74 15.07 5.74 5.74 Total: -1.00 -32.95 380.74 -7.89 -40.84 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -7.08 Total: 4.44 kcal Atomic # 6 Polarization: 20.36 SS G_CDS: -0.96 Total: 19.40 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: -0.84 Total: -61.31 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: 0.28 Total: -24.14 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.03 Total: 15.03 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.95 -7.89 -40.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994208367.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.877 kcal (2) G-P(sol) polarization free energy of solvation -32.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds