Wall clock time and date at job start Tue Mar 31 2020 21:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.69913 * 2 1 4 4 C 1.53190 * 109.58785 * 239.64478 * 2 1 3 5 5 H 1.09004 * 109.49660 * 305.55801 * 4 2 1 6 6 N 1.46498 * 109.50006 * 65.62354 * 4 2 1 7 7 C 1.34777 * 120.00336 * 204.93549 * 6 4 2 8 8 O 1.21280 * 119.99803 * 0.02562 * 7 6 4 9 9 C 1.50690 * 120.00224 * 180.02562 * 7 6 4 10 10 N 1.46503 * 109.47249 * 179.97438 * 9 7 6 11 11 C 1.34765 * 124.17759 * 269.69706 * 10 9 7 12 12 O 1.21235 * 127.15684 * 0.02562 * 11 10 9 13 13 C 1.51582 * 105.68489 * 179.97438 * 11 10 9 14 14 N 1.47307 * 103.59308 * 0.32132 * 13 11 10 15 15 C 1.46501 * 126.69136 * 179.76641 * 14 13 11 16 16 C 1.33791 * 124.17633 * 90.00213 * 10 9 7 17 17 O 1.21540 * 123.77167 * 359.95974 * 16 10 9 18 18 C 1.53038 * 109.33838 * 185.59614 * 4 2 1 19 19 C 1.53037 * 109.54209 * 61.34553 * 18 4 2 20 20 C 1.53188 * 109.31239 * 298.63932 * 19 18 4 21 21 N 1.46927 * 108.77991 * 54.63321 * 20 19 18 22 22 C 1.36930 * 120.63427 * 126.43729 * 21 20 19 23 23 H 1.08003 * 119.99922 * 209.00760 * 22 21 20 24 24 C 1.38807 * 120.00278 * 28.99918 * 22 21 20 25 25 N 1.31621 * 119.99886 * 15.02288 * 24 22 21 26 26 Si 1.86798 * 120.00654 * 195.01829 * 24 22 21 27 27 H 1.48505 * 109.47035 * 60.00261 * 26 24 22 28 28 H 1.48494 * 109.47507 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.46988 * 300.00632 * 26 24 22 30 30 H 1.09004 * 109.47110 * 180.35719 * 1 2 3 31 31 H 1.08997 * 109.47205 * 300.35440 * 1 2 3 32 32 H 1.08999 * 109.46814 * 60.36073 * 1 2 3 33 33 H 0.96999 * 120.00017 * 24.93821 * 6 4 2 34 34 H 1.09002 * 109.47232 * 300.00277 * 9 7 6 35 35 H 1.08997 * 109.47494 * 59.99870 * 9 7 6 36 36 H 1.09003 * 110.76367 * 241.71901 * 13 11 10 37 37 H 1.09003 * 110.43383 * 118.77150 * 13 11 10 38 38 H 1.09008 * 109.47092 * 180.02562 * 15 14 13 39 39 H 1.08996 * 109.47525 * 300.02455 * 15 14 13 40 40 H 1.08999 * 109.47003 * 60.02737 * 15 14 13 41 41 H 1.09001 * 109.45940 * 181.36558 * 18 4 2 42 42 H 1.08997 * 109.45845 * 301.34071 * 18 4 2 43 43 H 1.09007 * 109.49462 * 58.58827 * 19 18 4 44 44 H 1.09001 * 109.50039 * 178.68389 * 19 18 4 45 45 H 1.09002 * 109.58637 * 174.42115 * 20 19 18 46 46 H 1.08998 * 109.58513 * 294.84545 * 20 19 18 47 47 H 0.96999 * 120.00182 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2454 5 1 1.6026 -1.7251 -1.2916 6 7 1.6706 0.0267 -2.4435 7 6 1.5486 -0.6047 -3.6280 8 8 1.7471 -1.7989 -3.7019 9 6 1.1654 0.1731 -4.8605 10 7 1.1002 -0.7336 -6.0094 11 6 2.1422 -1.0048 -6.8199 12 8 3.2678 -0.5618 -6.7386 13 6 1.6145 -1.9800 -7.8534 14 7 0.2020 -2.1559 -7.4740 15 6 -0.7869 -3.0004 -8.1486 16 6 -0.0027 -1.3900 -6.3872 17 8 -1.0706 -1.3029 -5.8134 18 6 3.5675 -0.8487 -1.1705 19 6 3.9569 -1.6663 0.0631 20 6 3.4657 -0.9472 1.3234 21 7 2.0232 -0.6992 1.1945 22 6 1.1546 -1.1113 2.1695 23 1 0.1366 -1.3654 1.9135 24 6 1.5824 -1.2028 3.4868 25 7 2.7062 -0.6251 3.8554 26 14 0.5633 -2.1455 4.7367 27 1 0.4326 -3.5598 4.3030 28 1 1.2323 -2.0933 6.0614 29 1 -0.7854 -1.5325 4.8392 30 1 -0.3633 -1.0277 0.0064 31 1 -0.3633 0.5193 0.8868 32 1 -0.3633 0.5082 -0.8932 33 1 1.5115 0.9817 -2.3844 34 1 0.1914 0.6382 -4.7084 35 1 1.9112 0.9452 -5.0493 36 1 2.1477 -2.9290 -7.7970 37 1 1.6927 -1.5538 -8.8536 38 1 -1.7443 -2.9211 -7.6335 39 1 -0.9017 -2.6713 -9.1814 40 1 -0.4506 -4.0370 -8.1329 41 1 3.9373 -1.3459 -2.0672 42 1 4.0066 0.1464 -1.0997 43 1 3.4978 -2.6533 0.0052 44 1 5.0412 -1.7707 0.1031 45 1 3.6524 -1.5719 2.1969 46 1 3.9914 0.0016 1.4310 47 1 3.0050 -0.6887 4.7760 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994368021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:29 Heat of formation + Delta-G solvation = -42.083132 kcal Electronic energy + Delta-G solvation = -30529.875702 eV Core-core repulsion = 26328.859717 eV Total energy + Delta-G solvation = -4201.015985 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.61463 -39.72384 -38.85472 -37.68908 -36.42536 -35.38770 -34.33106 -32.60518 -31.74091 -30.65154 -29.27085 -27.76407 -26.62323 -25.96532 -24.96864 -22.80262 -22.36612 -20.90761 -20.69399 -20.13047 -19.37452 -17.93728 -17.78556 -17.02063 -16.69722 -16.34062 -15.97875 -15.52552 -15.20646 -15.03261 -14.77863 -14.67565 -14.33433 -14.27003 -13.78361 -13.76478 -13.56488 -13.33428 -12.96831 -12.91441 -12.76347 -12.56972 -12.32143 -11.70887 -11.53259 -11.21705 -11.10384 -10.90383 -10.75216 -10.64728 -10.56335 -10.51887 -10.29079 -10.11195 -10.04077 -9.84301 -9.56405 -9.40078 -9.29377 -8.71451 -8.44769 -6.67512 -5.78818 -3.23290 1.37410 1.67921 2.55683 2.67173 2.73429 3.35934 3.39506 3.44768 3.47314 3.70262 4.31207 4.48911 4.59573 4.70028 4.76237 4.78309 4.91777 5.00041 5.14978 5.26743 5.29851 5.39886 5.50504 5.52233 5.60841 5.79195 5.96925 6.04055 6.08010 6.21784 6.33849 6.41914 6.53344 6.61612 6.70711 6.75552 6.78561 6.84752 6.99020 7.05355 7.07668 7.40930 7.63086 7.68369 7.79906 7.81903 8.30530 8.45411 9.20656 9.83181 10.39195 11.29792 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020525 B = 0.002679 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.868102 B =10448.625017 C =11099.863450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.168 3.832 3 H 0.029 0.971 4 C 0.132 3.868 5 H 0.086 0.914 6 N -0.712 5.712 7 C 0.499 3.501 8 O -0.533 6.533 9 C 0.099 3.901 10 N -0.560 5.560 11 C 0.527 3.473 12 O -0.467 6.467 13 C 0.067 3.933 14 N -0.630 5.630 15 C 0.119 3.881 16 C 0.705 3.295 17 O -0.537 6.537 18 C -0.116 4.116 19 C -0.140 4.140 20 C 0.169 3.831 21 N -0.582 5.582 22 C -0.252 4.252 23 H 0.070 0.930 24 C 0.004 3.996 25 N -0.903 5.903 26 Si 0.903 3.097 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.039 0.961 33 H 0.398 0.602 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.048 0.952 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.052 0.948 45 H 0.090 0.910 46 H 0.019 0.981 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.724 0.918 -25.373 25.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 H 0.046 0.954 4 C 0.026 3.974 5 H 0.104 0.896 6 N -0.363 5.363 7 C 0.283 3.717 8 O -0.409 6.409 9 C -0.027 4.027 10 N -0.305 5.305 11 C 0.314 3.686 12 O -0.336 6.336 13 C -0.059 4.059 14 N -0.370 5.370 15 C -0.021 4.021 16 C 0.408 3.592 17 O -0.410 6.410 18 C -0.155 4.155 19 C -0.180 4.180 20 C 0.044 3.956 21 N -0.305 5.305 22 C -0.382 4.382 23 H 0.088 0.912 24 C -0.194 4.194 25 N -0.548 5.548 26 Si 0.733 3.267 27 H -0.210 1.210 28 H -0.217 1.217 29 H -0.209 1.209 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.232 0.768 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.109 0.891 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.108 0.892 46 H 0.037 0.963 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.582 0.302 -24.871 25.007 hybrid contribution -0.391 -0.040 0.739 0.837 sum -2.973 0.261 -24.132 24.315 Atomic orbital electron populations 1.21823 0.95578 1.01780 1.00265 1.20563 0.93275 0.93564 0.86574 0.95390 1.21835 0.95160 0.96863 0.83529 0.89628 1.46036 1.69825 1.12284 1.08164 1.20585 0.77795 0.88482 0.84856 1.90719 1.49923 1.14823 1.85470 1.21505 1.06403 0.91619 0.83145 1.45825 1.12369 1.44014 1.28325 1.20845 0.84341 0.81071 0.82297 1.90834 1.17674 1.52915 1.72168 1.22462 0.82661 1.01203 0.99567 1.47397 1.11162 1.48037 1.30410 1.21544 0.91102 0.92888 0.96601 1.15760 0.83548 0.78954 0.80971 1.90996 1.25154 1.66831 1.58060 1.21757 0.95273 1.00122 0.98361 1.22188 0.99242 0.99692 0.96872 1.20856 0.83029 0.97231 0.94506 1.44036 1.03190 1.65130 1.18165 1.19138 0.94805 1.38081 0.86169 0.91209 1.25067 0.97816 0.99632 0.96933 1.70009 1.23274 1.44471 1.17000 0.86367 0.79600 0.80219 0.80559 1.20989 1.21650 1.20871 0.92668 0.91726 0.94226 0.76834 0.85591 0.85787 0.85859 0.85994 0.89089 0.91370 0.91300 0.93281 0.92670 0.92585 0.92979 0.89219 0.96274 0.93588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 7.84 37.16 0.29 -2.28 16 2 C 0.17 3.39 3.03 -67.59 -0.21 3.18 16 3 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 4 C 0.13 2.41 1.99 -67.81 -0.14 2.28 16 5 H 0.09 1.84 7.58 -51.93 -0.39 1.45 16 6 N -0.71 -10.28 4.57 -53.69 -0.25 -10.52 16 7 C 0.50 7.57 7.86 -10.99 -0.09 7.48 16 8 O -0.53 -10.37 16.09 5.56 0.09 -10.29 16 9 C 0.10 1.08 6.18 -5.20 -0.03 1.05 16 10 N -0.56 -6.62 2.09 -122.03 -0.26 -6.87 16 11 C 0.53 5.65 8.31 -10.56 -0.09 5.56 16 12 O -0.47 -6.21 17.75 5.60 0.10 -6.11 16 13 C 0.07 0.43 7.66 -4.32 -0.03 0.40 16 14 N -0.63 -5.36 3.42 -187.95 -0.64 -6.01 16 15 C 0.12 0.63 11.33 59.85 0.68 1.31 16 16 C 0.71 8.78 8.31 -88.02 -0.73 8.05 16 17 O -0.54 -8.46 16.92 5.33 0.09 -8.37 16 18 C -0.12 -2.14 5.46 -26.69 -0.15 -2.29 16 19 C -0.14 -2.82 6.08 -26.61 -0.16 -2.98 16 20 C 0.17 4.03 5.29 -3.71 -0.02 4.01 16 21 N -0.58 -14.27 2.99 -164.77 -0.49 -14.76 16 22 C -0.25 -6.76 8.61 -15.06 -0.13 -6.89 16 23 H 0.07 1.84 6.20 -52.48 -0.33 1.51 16 24 C 0.00 0.11 4.96 -17.43 -0.09 0.03 16 25 N -0.90 -25.89 11.14 55.49 0.62 -25.27 16 26 Si 0.90 21.69 29.58 -169.99 -5.03 16.66 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 29 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 30 H 0.05 1.10 7.41 -51.93 -0.38 0.72 16 31 H 0.06 1.29 7.66 -51.93 -0.40 0.89 16 32 H 0.04 0.61 7.78 -51.93 -0.40 0.20 16 33 H 0.40 4.43 8.60 -40.82 -0.35 4.08 16 34 H 0.13 1.15 7.86 -51.93 -0.41 0.74 16 35 H 0.12 1.03 8.00 -51.93 -0.42 0.62 16 36 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.12 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 0.60 7.67 -51.92 -0.40 0.20 16 39 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 40 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 41 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 44 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.09 2.39 6.06 -51.93 -0.31 2.08 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 383.35 15.07 5.78 5.78 Total: -1.00 -36.63 383.35 -8.03 -44.66 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -7.16 Total: 2.18 kcal Atomic # 6 Polarization: 19.80 SS G_CDS: -0.89 Total: 18.91 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: -1.02 Total: -63.43 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: 0.28 Total: -24.77 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.63 -8.03 -44.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994368021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.581 kcal (2) G-P(sol) polarization free energy of solvation -36.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds