Wall clock time and date at job start Tue Mar 31 2020 21:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.69913 * 2 1 4 4 C 1.53190 * 109.58785 * 239.64478 * 2 1 3 5 5 H 1.09004 * 109.49660 * 305.55801 * 4 2 1 6 6 N 1.46498 * 109.50006 * 65.62354 * 4 2 1 7 7 C 1.34777 * 120.00336 * 204.93549 * 6 4 2 8 8 O 1.21280 * 119.99803 * 0.02562 * 7 6 4 9 9 C 1.50690 * 120.00224 * 180.02562 * 7 6 4 10 10 N 1.46503 * 109.47249 * 179.97438 * 9 7 6 11 11 C 1.34765 * 124.17759 * 269.69706 * 10 9 7 12 12 O 1.21235 * 127.15684 * 0.02562 * 11 10 9 13 13 C 1.51582 * 105.68489 * 179.97438 * 11 10 9 14 14 N 1.47307 * 103.59308 * 0.32132 * 13 11 10 15 15 C 1.46501 * 126.69136 * 179.76641 * 14 13 11 16 16 C 1.33791 * 124.17633 * 90.00213 * 10 9 7 17 17 O 1.21540 * 123.77167 * 359.95974 * 16 10 9 18 18 C 1.53038 * 109.33838 * 185.59614 * 4 2 1 19 19 C 1.53037 * 109.54209 * 61.34553 * 18 4 2 20 20 C 1.53188 * 109.31239 * 298.63932 * 19 18 4 21 21 N 1.46927 * 108.77991 * 54.63321 * 20 19 18 22 22 C 1.36930 * 120.63427 * 126.43729 * 21 20 19 23 23 H 1.08003 * 119.99922 * 209.00760 * 22 21 20 24 24 C 1.38807 * 120.00278 * 28.99918 * 22 21 20 25 25 N 1.31621 * 119.99886 * 15.02288 * 24 22 21 26 26 Si 1.86798 * 120.00654 * 195.01829 * 24 22 21 27 27 H 1.48505 * 109.47035 * 60.00261 * 26 24 22 28 28 H 1.48494 * 109.47507 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.46988 * 300.00632 * 26 24 22 30 30 H 1.09004 * 109.47110 * 180.35719 * 1 2 3 31 31 H 1.08997 * 109.47205 * 300.35440 * 1 2 3 32 32 H 1.08999 * 109.46814 * 60.36073 * 1 2 3 33 33 H 0.96999 * 120.00017 * 24.93821 * 6 4 2 34 34 H 1.09002 * 109.47232 * 300.00277 * 9 7 6 35 35 H 1.08997 * 109.47494 * 59.99870 * 9 7 6 36 36 H 1.09003 * 110.76367 * 241.71901 * 13 11 10 37 37 H 1.09003 * 110.43383 * 118.77150 * 13 11 10 38 38 H 1.09008 * 109.47092 * 180.02562 * 15 14 13 39 39 H 1.08996 * 109.47525 * 300.02455 * 15 14 13 40 40 H 1.08999 * 109.47003 * 60.02737 * 15 14 13 41 41 H 1.09001 * 109.45940 * 181.36558 * 18 4 2 42 42 H 1.08997 * 109.45845 * 301.34071 * 18 4 2 43 43 H 1.09007 * 109.49462 * 58.58827 * 19 18 4 44 44 H 1.09001 * 109.50039 * 178.68389 * 19 18 4 45 45 H 1.09002 * 109.58637 * 174.42115 * 20 19 18 46 46 H 1.08998 * 109.58513 * 294.84545 * 20 19 18 47 47 H 0.96999 * 120.00182 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2454 5 1 1.6026 -1.7251 -1.2916 6 7 1.6706 0.0267 -2.4435 7 6 1.5486 -0.6047 -3.6280 8 8 1.7471 -1.7989 -3.7019 9 6 1.1654 0.1731 -4.8605 10 7 1.1002 -0.7336 -6.0094 11 6 2.1422 -1.0048 -6.8199 12 8 3.2678 -0.5618 -6.7386 13 6 1.6145 -1.9800 -7.8534 14 7 0.2020 -2.1559 -7.4740 15 6 -0.7869 -3.0004 -8.1486 16 6 -0.0027 -1.3900 -6.3872 17 8 -1.0706 -1.3029 -5.8134 18 6 3.5675 -0.8487 -1.1705 19 6 3.9569 -1.6663 0.0631 20 6 3.4657 -0.9472 1.3234 21 7 2.0232 -0.6992 1.1945 22 6 1.1546 -1.1113 2.1695 23 1 0.1366 -1.3654 1.9135 24 6 1.5824 -1.2028 3.4868 25 7 2.7062 -0.6251 3.8554 26 14 0.5633 -2.1455 4.7367 27 1 0.4326 -3.5598 4.3030 28 1 1.2323 -2.0933 6.0614 29 1 -0.7854 -1.5325 4.8392 30 1 -0.3633 -1.0277 0.0064 31 1 -0.3633 0.5193 0.8868 32 1 -0.3633 0.5082 -0.8932 33 1 1.5115 0.9817 -2.3844 34 1 0.1914 0.6382 -4.7084 35 1 1.9112 0.9452 -5.0493 36 1 2.1477 -2.9290 -7.7970 37 1 1.6927 -1.5538 -8.8536 38 1 -1.7443 -2.9211 -7.6335 39 1 -0.9017 -2.6713 -9.1814 40 1 -0.4506 -4.0370 -8.1329 41 1 3.9373 -1.3459 -2.0672 42 1 4.0066 0.1464 -1.0997 43 1 3.4978 -2.6533 0.0052 44 1 5.0412 -1.7707 0.1031 45 1 3.6524 -1.5719 2.1969 46 1 3.9914 0.0016 1.4310 47 1 3.0050 -0.6887 4.7760 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994368021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:28 Heat of formation + Delta-G solvation = -68.587278 kcal Electronic energy + Delta-G solvation = -30531.025008 eV Core-core repulsion = 26328.859717 eV Total energy + Delta-G solvation = -4202.165291 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.42231 -41.05423 -39.74201 -39.26854 -37.29679 -36.27279 -35.87897 -34.31775 -33.46772 -31.72292 -30.62594 -28.70682 -27.76700 -27.15482 -26.78156 -24.05132 -23.46623 -22.38819 -22.04186 -21.32977 -20.87730 -18.96209 -18.66546 -18.26698 -17.82492 -17.58887 -17.28525 -16.84016 -16.46890 -16.15247 -15.87792 -15.62881 -15.60532 -15.44526 -15.20854 -15.06010 -14.91692 -14.60256 -14.49309 -14.29395 -13.46084 -13.39492 -13.33237 -13.27636 -13.18818 -12.80800 -12.73151 -12.55359 -12.40150 -12.11854 -12.03667 -11.89051 -11.81281 -11.72867 -11.57623 -11.38437 -11.20609 -10.69307 -10.53413 -10.08606 -9.97670 -8.66999 -7.86650 -5.32700 0.58085 0.92102 1.45761 1.48483 1.48700 1.54457 1.74991 2.01306 2.23676 2.53156 3.01470 3.28718 3.52990 3.66570 3.69490 3.87829 4.00155 4.11071 4.16727 4.17572 4.24300 4.31236 4.33615 4.36746 4.49587 4.59649 4.69467 4.73670 4.85815 4.89753 4.90545 4.94940 5.00495 5.10127 5.18022 5.25414 5.39097 5.42367 5.45261 5.57111 5.68782 5.74989 6.00396 6.27390 6.40467 6.47577 6.94763 7.13870 7.16929 7.85367 8.36483 9.20148 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020525 B = 0.002679 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.868102 B =10448.625017 C =11099.863450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.166 3.834 3 H 0.039 0.961 4 C 0.148 3.852 5 H 0.052 0.948 6 N -0.700 5.700 7 C 0.497 3.503 8 O -0.580 6.580 9 C 0.101 3.899 10 N -0.568 5.568 11 C 0.520 3.480 12 O -0.498 6.498 13 C 0.075 3.925 14 N -0.623 5.623 15 C 0.112 3.888 16 C 0.694 3.306 17 O -0.582 6.582 18 C -0.108 4.108 19 C -0.130 4.130 20 C 0.176 3.824 21 N -0.601 5.601 22 C -0.256 4.256 23 H 0.070 0.930 24 C -0.047 4.047 25 N -0.933 5.933 26 Si 0.961 3.039 27 H -0.283 1.283 28 H -0.293 1.293 29 H -0.274 1.274 30 H 0.036 0.964 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.417 0.583 34 H 0.146 0.854 35 H 0.154 0.846 36 H 0.145 0.855 37 H 0.166 0.834 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.050 0.950 42 H 0.070 0.930 43 H 0.040 0.960 44 H 0.072 0.928 45 H 0.056 0.944 46 H 0.007 0.993 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.086 1.325 -28.316 28.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.059 3.941 3 H 0.057 0.943 4 C 0.041 3.959 5 H 0.070 0.930 6 N -0.353 5.353 7 C 0.282 3.718 8 O -0.459 6.459 9 C -0.024 4.024 10 N -0.313 5.313 11 C 0.309 3.691 12 O -0.370 6.370 13 C -0.049 4.049 14 N -0.361 5.361 15 C -0.027 4.027 16 C 0.396 3.604 17 O -0.459 6.459 18 C -0.146 4.146 19 C -0.170 4.170 20 C 0.051 3.949 21 N -0.325 5.325 22 C -0.386 4.386 23 H 0.088 0.912 24 C -0.243 4.243 25 N -0.579 5.579 26 Si 0.790 3.210 27 H -0.210 1.210 28 H -0.220 1.220 29 H -0.200 1.200 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.255 0.745 34 H 0.164 0.836 35 H 0.172 0.828 36 H 0.163 0.837 37 H 0.184 0.816 38 H 0.091 0.909 39 H 0.120 0.880 40 H 0.104 0.896 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.059 0.941 44 H 0.091 0.909 45 H 0.074 0.926 46 H 0.025 0.975 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.957 0.725 -27.885 28.051 hybrid contribution -0.280 -0.183 1.565 1.600 sum -3.237 0.542 -26.320 26.524 Atomic orbital electron populations 1.21737 0.94520 1.00889 1.01423 1.20721 0.94191 0.93656 0.85549 0.94321 1.21303 0.94858 0.95394 0.84314 0.92991 1.45790 1.69471 1.13033 1.06961 1.21342 0.76460 0.88154 0.85819 1.90697 1.51916 1.17075 1.86230 1.21628 1.08268 0.91369 0.81123 1.46006 1.12731 1.44090 1.28425 1.21548 0.83669 0.81143 0.82694 1.90817 1.18699 1.54298 1.73159 1.22730 0.81053 1.01187 0.99946 1.47670 1.12514 1.46871 1.29084 1.21826 0.89688 0.93505 0.97668 1.16064 0.83098 0.79497 0.81755 1.90956 1.26692 1.68543 1.59728 1.21666 0.95271 1.00481 0.97217 1.22028 1.00314 0.98635 0.95975 1.20646 0.83125 0.96228 0.94952 1.44272 1.03189 1.65953 1.19065 1.19406 0.95109 1.37259 0.86820 0.91189 1.25744 0.99029 1.00871 0.98643 1.70148 1.24794 1.46029 1.16911 0.85439 0.78497 0.78884 0.78222 1.20979 1.21958 1.20013 0.94498 0.93080 0.90526 0.74526 0.83633 0.82821 0.83725 0.81636 0.90917 0.88043 0.89558 0.93114 0.91179 0.94075 0.90897 0.92562 0.97540 0.94153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.72 7.84 71.98 0.56 -4.16 16 2 C 0.17 6.59 3.03 44.97 0.14 6.72 16 3 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 4 C 0.15 5.35 1.99 45.07 0.09 5.44 16 5 H 0.05 2.27 7.58 -2.38 -0.02 2.25 16 6 N -0.70 -19.05 4.57 -442.18 -2.02 -21.07 16 7 C 0.50 14.46 7.86 87.65 0.69 15.15 16 8 O -0.58 -22.49 16.09 -3.03 -0.05 -22.54 16 9 C 0.10 2.02 6.18 85.63 0.53 2.55 16 10 N -0.57 -12.48 2.09 -777.23 -1.63 -14.11 16 11 C 0.52 10.04 8.31 87.94 0.73 10.77 16 12 O -0.50 -12.39 17.75 -2.89 -0.05 -12.44 16 13 C 0.08 0.71 7.66 85.76 0.66 1.36 16 14 N -0.62 -9.03 3.42 -866.96 -2.96 -12.00 16 15 C 0.11 0.89 11.33 127.77 1.45 2.34 16 16 C 0.69 16.40 8.31 179.44 1.49 17.89 16 17 O -0.58 -18.21 16.92 -3.84 -0.06 -18.27 16 18 C -0.11 -3.86 5.46 30.62 0.17 -3.70 16 19 C -0.13 -5.24 6.08 30.67 0.19 -5.06 16 20 C 0.18 8.58 5.29 86.36 0.46 9.04 16 21 N -0.60 -29.91 2.99 -675.22 -2.02 -31.93 16 22 C -0.26 -13.95 8.61 84.03 0.72 -13.22 16 23 H 0.07 3.74 6.20 -2.91 -0.02 3.72 16 24 C -0.05 -2.65 4.96 84.86 0.42 -2.23 16 25 N -0.93 -54.88 11.14 21.65 0.24 -54.63 16 26 Si 0.96 45.39 29.58 68.60 2.03 47.42 16 27 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 28 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 29 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 30 H 0.04 1.47 7.41 -2.38 -0.02 1.45 16 31 H 0.05 2.00 7.66 -2.39 -0.02 1.99 16 32 H 0.08 2.21 7.78 -2.39 -0.02 2.19 16 33 H 0.42 8.15 8.60 -92.71 -0.80 7.35 16 34 H 0.15 2.34 7.86 -2.39 -0.02 2.32 16 35 H 0.15 2.12 8.00 -2.39 -0.02 2.11 16 36 H 0.15 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.17 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.07 0.88 7.67 -2.38 -0.02 0.86 16 39 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 40 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 44 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 45 H 0.06 3.11 6.06 -2.39 -0.01 3.10 16 46 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 47 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -83.46 383.35 1.96 -81.50 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.20 Total: 15.18 kcal Atomic # 6 Polarization: 34.60 SS G_CDS: 8.29 Total: 42.89 kcal Atomic # 7 Polarization: -125.35 SS G_CDS: -8.39 Total: -133.74 kcal Atomic # 8 Polarization: -53.09 SS G_CDS: -0.17 Total: -53.25 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -83.46 1.96 -81.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994368021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.918 kcal (2) G-P(sol) polarization free energy of solvation -83.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds