Wall clock time and date at job start Tue Mar 31 2020 21:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.58724 * 2 1 4 4 C 1.53200 * 109.58656 * 120.28254 * 2 1 3 5 5 H 1.09004 * 109.49489 * 294.54884 * 4 2 1 6 6 N 1.46499 * 109.49398 * 54.61050 * 4 2 1 7 7 C 1.34777 * 119.99922 * 204.99916 * 6 4 2 8 8 O 1.21293 * 119.99763 * 0.02562 * 7 6 4 9 9 C 1.50702 * 120.00454 * 180.02562 * 7 6 4 10 10 N 1.46499 * 109.47410 * 180.02562 * 9 7 6 11 11 C 1.34768 * 124.17641 * 269.96434 * 10 9 7 12 12 O 1.21239 * 127.15889 * 0.04851 * 11 10 9 13 13 C 1.51580 * 105.68113 * 180.02562 * 11 10 9 14 14 N 1.47307 * 103.59552 * 359.97438 * 13 11 10 15 15 C 1.46497 * 126.68798 * 180.26587 * 14 13 11 16 16 C 1.33787 * 124.17913 * 89.99677 * 10 9 7 17 17 O 1.21543 * 123.76826 * 359.96951 * 16 10 9 18 18 C 1.53036 * 109.31203 * 174.56523 * 4 2 1 19 19 C 1.53041 * 109.53822 * 298.63388 * 18 4 2 20 20 C 1.53183 * 109.31289 * 61.36890 * 19 18 4 21 21 N 1.46921 * 109.70559 * 239.63931 * 2 1 3 22 22 C 1.36940 * 120.63298 * 6.52037 * 21 2 1 23 23 H 1.08003 * 119.99543 * 330.91433 * 22 21 2 24 24 C 1.38808 * 120.00795 * 150.91763 * 22 21 2 25 25 N 1.31615 * 120.00265 * 160.72732 * 24 22 21 26 26 Si 1.86801 * 119.99479 * 340.72821 * 24 22 21 27 27 H 1.48503 * 109.47342 * 92.27305 * 26 24 22 28 28 H 1.48503 * 109.46746 * 212.26893 * 26 24 22 29 29 H 1.48498 * 109.47162 * 332.26711 * 26 24 22 30 30 H 1.08996 * 109.47067 * 299.71425 * 1 2 3 31 31 H 1.09003 * 109.46708 * 59.72274 * 1 2 3 32 32 H 1.09000 * 109.47111 * 179.71463 * 1 2 3 33 33 H 0.97000 * 120.00599 * 25.00903 * 6 4 2 34 34 H 1.09003 * 109.46676 * 60.00085 * 9 7 6 35 35 H 1.08995 * 109.46515 * 300.00696 * 9 7 6 36 36 H 1.09001 * 110.59863 * 241.46256 * 13 11 10 37 37 H 1.09011 * 110.60009 * 118.52832 * 13 11 10 38 38 H 1.08997 * 109.47347 * 179.71046 * 15 14 13 39 39 H 1.09000 * 109.47105 * 299.70723 * 15 14 13 40 40 H 1.09002 * 109.47661 * 59.70991 * 15 14 13 41 41 H 1.08999 * 109.45813 * 58.65752 * 18 4 2 42 42 H 1.09001 * 109.45860 * 178.61013 * 18 4 2 43 43 H 1.08997 * 109.49712 * 301.41474 * 19 18 4 44 44 H 1.09003 * 109.49543 * 181.31675 * 19 18 4 45 45 H 1.09007 * 109.58843 * 185.57715 * 20 19 18 46 46 H 1.09000 * 109.70586 * 65.22021 * 20 19 18 47 47 H 0.97004 * 119.99622 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7278 1.2464 5 1 1.7633 -0.1657 2.1373 6 7 1.4540 -2.0675 1.3080 7 6 1.3308 -2.6957 2.4940 8 8 1.7077 -2.1517 3.5104 9 6 0.7248 -4.0741 2.5574 10 7 0.7028 -4.5344 3.9480 11 6 1.7022 -5.2236 4.5332 12 8 2.7497 -5.5658 4.0277 13 6 1.2445 -5.4813 5.9550 14 7 -0.0841 -4.8475 6.0113 15 6 -0.9800 -4.7939 7.1692 16 6 -0.3121 -4.3232 4.7936 17 8 -1.3266 -3.7240 4.4952 18 6 3.5678 -0.8434 1.1730 19 6 3.9603 -1.6609 -0.0598 20 6 3.4686 -0.9437 -1.3209 21 7 2.0254 -0.6991 -1.1935 22 6 1.1586 -1.1152 -2.1685 23 1 0.1414 -1.3729 -1.9126 24 6 1.5870 -1.2059 -3.4857 25 7 0.9169 -1.9422 -4.3465 26 14 3.1147 -0.2827 -4.0364 27 1 4.3018 -1.1647 -3.9011 28 1 2.9611 0.1262 -5.4558 29 1 3.2957 0.9242 -3.1904 30 1 -0.3633 0.5094 0.8925 31 1 -0.3633 0.5182 -0.8875 32 1 -0.3633 -1.0277 -0.0051 33 1 1.1523 -2.5026 0.4952 34 1 1.3207 -4.7609 1.9562 35 1 -0.2933 -4.0414 2.1696 36 1 1.9233 -5.0124 6.6674 37 1 1.1674 -6.5519 6.1451 38 1 -1.8875 -4.2528 6.9017 39 1 -1.2384 -5.8075 7.4758 40 1 -0.4806 -4.2817 7.9916 41 1 4.0045 0.1528 1.1023 42 1 3.9380 -1.3390 2.0704 43 1 3.5037 -2.6488 -0.0017 44 1 5.0449 -1.7625 -0.0986 45 1 3.6577 -1.5685 -2.1939 46 1 3.9918 0.0062 -1.4312 47 1 1.2166 -2.0058 -5.2669 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994368024.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:34 Heat of formation + Delta-G solvation = -36.106517 kcal Electronic energy + Delta-G solvation = -31148.111638 eV Core-core repulsion = 26947.354819 eV Total energy + Delta-G solvation = -4200.756820 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.52966 -39.82730 -38.77171 -37.89134 -36.34953 -35.29625 -34.06933 -32.68952 -31.84488 -30.78217 -29.86185 -27.76380 -26.63641 -26.17827 -24.90079 -22.80656 -22.56235 -21.46232 -20.73024 -20.02114 -18.96599 -17.93373 -17.68349 -16.93864 -16.65916 -16.49736 -15.86790 -15.48087 -15.35253 -15.05673 -14.98905 -14.62701 -14.31859 -14.24869 -13.98528 -13.75479 -13.59085 -13.51729 -13.08193 -12.90798 -12.73028 -12.56744 -12.27937 -12.10792 -11.72114 -11.58356 -11.26544 -11.13435 -10.84163 -10.67297 -10.55948 -10.50567 -10.43070 -10.29706 -9.97955 -9.54060 -9.53682 -9.46980 -9.27666 -8.70781 -8.60503 -7.00586 -5.99835 -3.38811 1.45847 1.76584 2.63898 2.77646 2.82012 3.29789 3.46629 3.48938 3.52913 3.78186 4.38767 4.49213 4.65536 4.81191 4.82223 4.87458 4.91061 5.03585 5.12333 5.19399 5.27126 5.30675 5.37447 5.44560 5.50629 5.58218 5.70321 5.94740 6.04856 6.07495 6.10624 6.25337 6.29543 6.34583 6.43716 6.50773 6.67267 6.73260 6.81001 6.87240 6.91970 7.00968 7.15085 7.80204 7.89853 7.91087 8.28424 8.43884 8.87835 9.67168 10.04230 11.15242 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020075 B = 0.003089 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.405386 B = 9061.921419 C = 9295.074375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.163 3.837 3 H 0.045 0.955 4 C 0.135 3.865 5 H 0.080 0.920 6 N -0.696 5.696 7 C 0.500 3.500 8 O -0.547 6.547 9 C 0.098 3.902 10 N -0.559 5.559 11 C 0.526 3.474 12 O -0.466 6.466 13 C 0.068 3.932 14 N -0.631 5.631 15 C 0.120 3.880 16 C 0.706 3.294 17 O -0.538 6.538 18 C -0.122 4.122 19 C -0.132 4.132 20 C 0.125 3.875 21 N -0.602 5.602 22 C -0.265 4.265 23 H 0.093 0.907 24 C 0.028 3.972 25 N -0.907 5.907 26 Si 0.883 3.117 27 H -0.289 1.289 28 H -0.305 1.305 29 H -0.271 1.271 30 H 0.042 0.958 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.413 0.587 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.073 0.927 46 H 0.025 0.975 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.379 -7.137 21.058 22.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.057 3.943 3 H 0.062 0.938 4 C 0.029 3.971 5 H 0.098 0.902 6 N -0.347 5.347 7 C 0.284 3.716 8 O -0.425 6.425 9 C -0.027 4.027 10 N -0.304 5.304 11 C 0.314 3.686 12 O -0.335 6.335 13 C -0.059 4.059 14 N -0.371 5.371 15 C -0.021 4.021 16 C 0.408 3.592 17 O -0.411 6.411 18 C -0.161 4.161 19 C -0.171 4.171 20 C -0.001 4.001 21 N -0.327 5.327 22 C -0.393 4.393 23 H 0.110 0.890 24 C -0.171 4.171 25 N -0.550 5.550 26 Si 0.714 3.286 27 H -0.217 1.217 28 H -0.234 1.234 29 H -0.196 1.196 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.250 0.750 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.109 0.891 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.091 0.909 46 H 0.043 0.957 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.233 -6.623 21.184 22.197 hybrid contribution 0.935 0.326 -0.897 1.336 sum 0.702 -6.297 20.287 21.254 Atomic orbital electron populations 1.21790 0.94725 1.02110 1.00735 1.20742 0.94088 0.93724 0.85785 0.93781 1.21527 0.92728 0.83010 0.99858 0.90180 1.45898 1.61487 1.18497 1.08860 1.20576 0.79253 0.87427 0.84332 1.90674 1.50263 1.67087 1.34455 1.21509 1.05670 0.95382 0.80151 1.45825 1.18977 1.52164 1.13386 1.20834 0.82939 0.76381 0.88490 1.90838 1.21784 1.50540 1.70361 1.22453 0.85682 1.01792 0.95939 1.47391 1.19240 1.58911 1.11562 1.21525 0.93233 1.02528 0.84799 1.15760 0.82995 0.79400 0.81055 1.90993 1.27547 1.44149 1.78387 1.21781 0.95627 1.00451 0.98198 1.21947 0.99315 0.99865 0.95963 1.21367 0.85034 0.97180 0.96480 1.44494 1.02120 1.65701 1.20424 1.18905 0.95860 1.38710 0.85787 0.88957 1.25309 0.97535 0.98495 0.95803 1.69805 1.41256 1.39214 1.04683 0.86966 0.83366 0.81434 0.76876 1.21699 1.23362 1.19618 0.93921 0.91452 0.92308 0.75014 0.85656 0.85485 0.86023 0.86027 0.89123 0.91411 0.91409 0.91733 0.92553 0.91843 0.92904 0.90905 0.95733 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 7.73 37.16 0.29 -2.11 16 2 C 0.16 3.02 3.19 -67.60 -0.22 2.80 16 3 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 4 C 0.14 2.28 2.32 -67.81 -0.16 2.12 16 5 H 0.08 1.38 7.58 -51.93 -0.39 0.99 16 6 N -0.70 -11.20 3.47 -53.68 -0.19 -11.38 16 7 C 0.50 8.06 7.87 -10.98 -0.09 7.97 16 8 O -0.55 -10.41 16.09 5.55 0.09 -10.32 16 9 C 0.10 1.27 6.18 -5.19 -0.03 1.24 16 10 N -0.56 -7.21 2.09 -122.03 -0.26 -7.47 16 11 C 0.53 6.15 8.32 -10.56 -0.09 6.06 16 12 O -0.47 -6.73 17.76 5.59 0.10 -6.63 16 13 C 0.07 0.48 7.66 -4.32 -0.03 0.44 16 14 N -0.63 -5.69 3.42 -187.95 -0.64 -6.33 16 15 C 0.12 0.67 11.33 59.85 0.68 1.35 16 16 C 0.71 9.30 8.31 -88.03 -0.73 8.57 16 17 O -0.54 -8.83 16.92 5.33 0.09 -8.74 16 18 C -0.12 -2.01 5.58 -26.69 -0.15 -2.16 16 19 C -0.13 -2.31 5.93 -26.62 -0.16 -2.46 16 20 C 0.12 2.58 4.20 -3.71 -0.02 2.56 16 21 N -0.60 -13.00 2.40 -164.77 -0.40 -13.40 16 22 C -0.26 -6.68 9.06 -15.06 -0.14 -6.82 16 23 H 0.09 2.44 6.40 -52.48 -0.34 2.11 16 24 C 0.03 0.76 5.24 -17.43 -0.09 0.67 16 25 N -0.91 -26.46 13.97 55.49 0.78 -25.69 16 26 Si 0.88 21.70 24.34 -169.99 -4.14 17.56 16 27 H -0.29 -6.93 6.63 56.52 0.37 -6.56 16 28 H -0.31 -7.76 7.11 56.52 0.40 -7.36 16 29 H -0.27 -6.59 6.63 56.52 0.37 -6.22 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.28 7.67 -51.93 -0.40 0.88 16 32 H 0.06 1.05 6.39 -51.93 -0.33 0.72 16 33 H 0.41 6.77 7.78 -40.82 -0.32 6.45 16 34 H 0.13 1.41 8.01 -51.93 -0.42 1.00 16 35 H 0.13 1.49 7.86 -51.93 -0.41 1.09 16 36 H 0.12 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.12 0.47 8.14 -51.92 -0.42 0.05 16 38 H 0.09 0.62 7.67 -51.93 -0.40 0.22 16 39 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 40 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.06 1.14 7.53 -51.93 -0.39 0.75 16 44 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.07 1.66 4.62 -51.93 -0.24 1.42 16 46 H 0.02 0.51 7.03 -51.93 -0.36 0.15 16 47 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 373.85 15.07 5.63 5.63 Total: -1.00 -34.91 373.85 -6.85 -41.76 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -6.99 Total: 4.77 kcal Atomic # 6 Polarization: 21.16 SS G_CDS: -0.93 Total: 20.23 kcal Atomic # 7 Polarization: -63.56 SS G_CDS: -0.70 Total: -64.27 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: 0.28 Total: -25.69 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.14 Total: 17.56 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.91 -6.85 -41.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994368024.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.655 kcal (2) G-P(sol) polarization free energy of solvation -34.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds