Wall clock time and date at job start Tue Mar 31 2020 21:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.58724 * 2 1 4 4 C 1.53200 * 109.58656 * 120.28254 * 2 1 3 5 5 H 1.09004 * 109.49489 * 294.54884 * 4 2 1 6 6 N 1.46499 * 109.49398 * 54.61050 * 4 2 1 7 7 C 1.34777 * 119.99922 * 204.99916 * 6 4 2 8 8 O 1.21293 * 119.99763 * 0.02562 * 7 6 4 9 9 C 1.50702 * 120.00454 * 180.02562 * 7 6 4 10 10 N 1.46499 * 109.47410 * 180.02562 * 9 7 6 11 11 C 1.34768 * 124.17641 * 269.96434 * 10 9 7 12 12 O 1.21239 * 127.15889 * 0.04851 * 11 10 9 13 13 C 1.51580 * 105.68113 * 180.02562 * 11 10 9 14 14 N 1.47307 * 103.59552 * 359.97438 * 13 11 10 15 15 C 1.46497 * 126.68798 * 180.26587 * 14 13 11 16 16 C 1.33787 * 124.17913 * 89.99677 * 10 9 7 17 17 O 1.21543 * 123.76826 * 359.96951 * 16 10 9 18 18 C 1.53036 * 109.31203 * 174.56523 * 4 2 1 19 19 C 1.53041 * 109.53822 * 298.63388 * 18 4 2 20 20 C 1.53183 * 109.31289 * 61.36890 * 19 18 4 21 21 N 1.46921 * 109.70559 * 239.63931 * 2 1 3 22 22 C 1.36940 * 120.63298 * 6.52037 * 21 2 1 23 23 H 1.08003 * 119.99543 * 330.91433 * 22 21 2 24 24 C 1.38808 * 120.00795 * 150.91763 * 22 21 2 25 25 N 1.31615 * 120.00265 * 160.72732 * 24 22 21 26 26 Si 1.86801 * 119.99479 * 340.72821 * 24 22 21 27 27 H 1.48503 * 109.47342 * 92.27305 * 26 24 22 28 28 H 1.48503 * 109.46746 * 212.26893 * 26 24 22 29 29 H 1.48498 * 109.47162 * 332.26711 * 26 24 22 30 30 H 1.08996 * 109.47067 * 299.71425 * 1 2 3 31 31 H 1.09003 * 109.46708 * 59.72274 * 1 2 3 32 32 H 1.09000 * 109.47111 * 179.71463 * 1 2 3 33 33 H 0.97000 * 120.00599 * 25.00903 * 6 4 2 34 34 H 1.09003 * 109.46676 * 60.00085 * 9 7 6 35 35 H 1.08995 * 109.46515 * 300.00696 * 9 7 6 36 36 H 1.09001 * 110.59863 * 241.46256 * 13 11 10 37 37 H 1.09011 * 110.60009 * 118.52832 * 13 11 10 38 38 H 1.08997 * 109.47347 * 179.71046 * 15 14 13 39 39 H 1.09000 * 109.47105 * 299.70723 * 15 14 13 40 40 H 1.09002 * 109.47661 * 59.70991 * 15 14 13 41 41 H 1.08999 * 109.45813 * 58.65752 * 18 4 2 42 42 H 1.09001 * 109.45860 * 178.61013 * 18 4 2 43 43 H 1.08997 * 109.49712 * 301.41474 * 19 18 4 44 44 H 1.09003 * 109.49543 * 181.31675 * 19 18 4 45 45 H 1.09007 * 109.58843 * 185.57715 * 20 19 18 46 46 H 1.09000 * 109.70586 * 65.22021 * 20 19 18 47 47 H 0.97004 * 119.99622 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7278 1.2464 5 1 1.7633 -0.1657 2.1373 6 7 1.4540 -2.0675 1.3080 7 6 1.3308 -2.6957 2.4940 8 8 1.7077 -2.1517 3.5104 9 6 0.7248 -4.0741 2.5574 10 7 0.7028 -4.5344 3.9480 11 6 1.7022 -5.2236 4.5332 12 8 2.7497 -5.5658 4.0277 13 6 1.2445 -5.4813 5.9550 14 7 -0.0841 -4.8475 6.0113 15 6 -0.9800 -4.7939 7.1692 16 6 -0.3121 -4.3232 4.7936 17 8 -1.3266 -3.7240 4.4952 18 6 3.5678 -0.8434 1.1730 19 6 3.9603 -1.6609 -0.0598 20 6 3.4686 -0.9437 -1.3209 21 7 2.0254 -0.6991 -1.1935 22 6 1.1586 -1.1152 -2.1685 23 1 0.1414 -1.3729 -1.9126 24 6 1.5870 -1.2059 -3.4857 25 7 0.9169 -1.9422 -4.3465 26 14 3.1147 -0.2827 -4.0364 27 1 4.3018 -1.1647 -3.9011 28 1 2.9611 0.1262 -5.4558 29 1 3.2957 0.9242 -3.1904 30 1 -0.3633 0.5094 0.8925 31 1 -0.3633 0.5182 -0.8875 32 1 -0.3633 -1.0277 -0.0051 33 1 1.1523 -2.5026 0.4952 34 1 1.3207 -4.7609 1.9562 35 1 -0.2933 -4.0414 2.1696 36 1 1.9233 -5.0124 6.6674 37 1 1.1674 -6.5519 6.1451 38 1 -1.8875 -4.2528 6.9017 39 1 -1.2384 -5.8075 7.4758 40 1 -0.4806 -4.2817 7.9916 41 1 4.0045 0.1528 1.1023 42 1 3.9380 -1.3390 2.0704 43 1 3.5037 -2.6488 -0.0017 44 1 5.0449 -1.7625 -0.0986 45 1 3.6577 -1.5685 -2.1939 46 1 3.9918 0.0062 -1.4312 47 1 1.2166 -2.0058 -5.2669 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994368024.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:33 Heat of formation + Delta-G solvation = -61.091961 kcal Electronic energy + Delta-G solvation = -31149.195089 eV Core-core repulsion = 26947.354819 eV Total energy + Delta-G solvation = -4201.840270 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.42298 -41.19593 -39.74475 -39.35454 -37.29346 -36.23210 -35.65564 -34.26176 -33.53390 -32.16801 -30.90738 -28.72807 -27.87770 -27.12723 -26.65916 -24.32411 -23.50300 -22.73721 -22.15606 -21.09528 -20.46203 -19.00476 -18.65518 -18.33521 -17.81582 -17.68449 -17.21047 -17.00817 -16.58346 -16.30866 -15.94191 -15.68653 -15.51377 -15.33024 -15.25137 -15.12886 -15.04228 -14.68996 -14.38217 -14.30046 -13.88434 -13.50260 -13.39424 -13.33678 -13.21751 -13.18379 -12.74858 -12.52757 -12.30074 -12.18981 -12.09564 -11.94369 -11.68654 -11.62223 -11.39575 -11.37929 -11.21980 -10.69916 -10.61793 -10.03075 -9.97128 -8.86426 -8.09078 -5.42631 0.58156 0.91815 1.33165 1.45384 1.50140 1.52007 1.77815 2.01194 2.34319 2.46979 3.01179 3.09885 3.28747 3.63787 3.65229 3.90240 3.96628 4.05337 4.09760 4.15044 4.22758 4.24516 4.29281 4.36722 4.46612 4.52442 4.59189 4.70645 4.80574 4.84151 4.90451 4.90993 4.95917 4.97942 5.05512 5.15213 5.25329 5.35127 5.39711 5.44228 5.58525 5.94955 6.01404 6.23821 6.28066 6.51072 6.94710 6.95797 7.13461 7.68191 8.08462 9.09526 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020075 B = 0.003089 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.405386 B = 9061.921419 C = 9295.074375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.162 3.838 3 H 0.054 0.946 4 C 0.141 3.859 5 H 0.082 0.918 6 N -0.694 5.694 7 C 0.501 3.499 8 O -0.576 6.576 9 C 0.097 3.903 10 N -0.566 5.566 11 C 0.518 3.482 12 O -0.500 6.500 13 C 0.078 3.922 14 N -0.621 5.621 15 C 0.113 3.887 16 C 0.694 3.306 17 O -0.582 6.582 18 C -0.115 4.115 19 C -0.122 4.122 20 C 0.121 3.879 21 N -0.610 5.610 22 C -0.233 4.233 23 H 0.075 0.925 24 C -0.029 4.029 25 N -0.955 5.955 26 Si 0.935 3.065 27 H -0.281 1.281 28 H -0.321 1.321 29 H -0.264 1.264 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.411 0.589 34 H 0.140 0.860 35 H 0.135 0.865 36 H 0.149 0.851 37 H 0.165 0.835 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.074 0.926 45 H 0.051 0.949 46 H 0.031 0.969 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.796 -7.530 24.055 25.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.056 3.944 3 H 0.072 0.928 4 C 0.034 3.966 5 H 0.100 0.900 6 N -0.345 5.345 7 C 0.286 3.714 8 O -0.456 6.456 9 C -0.028 4.028 10 N -0.311 5.311 11 C 0.307 3.693 12 O -0.372 6.372 13 C -0.046 4.046 14 N -0.360 5.360 15 C -0.027 4.027 16 C 0.396 3.604 17 O -0.459 6.459 18 C -0.153 4.153 19 C -0.161 4.161 20 C -0.004 4.004 21 N -0.335 5.335 22 C -0.363 4.363 23 H 0.092 0.908 24 C -0.224 4.224 25 N -0.601 5.601 26 Si 0.766 3.234 27 H -0.208 1.208 28 H -0.250 1.250 29 H -0.188 1.188 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.248 0.752 34 H 0.158 0.842 35 H 0.153 0.847 36 H 0.167 0.833 37 H 0.182 0.818 38 H 0.091 0.909 39 H 0.118 0.882 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.092 0.908 45 H 0.070 0.930 46 H 0.049 0.951 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.973 -7.021 24.269 25.283 hybrid contribution 0.521 0.444 -1.687 1.821 sum 1.495 -6.577 22.582 23.567 Atomic orbital electron populations 1.21717 0.94338 1.01710 1.00974 1.20894 0.94459 0.94036 0.84971 0.92812 1.21402 0.93183 0.83239 0.98732 0.89997 1.45894 1.61385 1.18304 1.08934 1.21025 0.78513 0.88231 0.83611 1.90647 1.51614 1.68065 1.35272 1.21522 1.06086 0.93868 0.81317 1.45992 1.19564 1.52212 1.13289 1.21636 0.82100 0.75339 0.90175 1.90818 1.22973 1.51880 1.71545 1.22720 0.84680 1.04321 0.92904 1.47662 1.20169 1.57480 1.10687 1.21835 0.92303 1.04629 0.83883 1.16049 0.82504 0.79558 0.82270 1.90953 1.29170 1.46404 1.79404 1.21728 0.95083 1.01051 0.97481 1.21831 1.00495 0.99125 0.94651 1.21395 0.84371 0.97369 0.97282 1.44580 1.02297 1.66259 1.20409 1.18881 0.95483 1.35685 0.86207 0.90766 1.25812 1.00237 1.00018 0.96321 1.69920 1.43561 1.41794 1.04834 0.86112 0.81191 0.80623 0.75509 1.20766 1.25039 1.18844 0.91636 0.93224 0.93045 0.75215 0.84182 0.84696 0.83317 0.81778 0.90912 0.88234 0.89200 0.90289 0.92561 0.92553 0.90792 0.93048 0.95137 0.93311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.49 7.73 71.98 0.56 -3.94 16 2 C 0.16 5.75 3.19 44.98 0.14 5.90 16 3 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 4 C 0.14 4.52 2.32 45.07 0.10 4.62 16 5 H 0.08 2.67 7.58 -2.38 -0.02 2.65 16 6 N -0.69 -21.82 3.47 -442.14 -1.53 -23.35 16 7 C 0.50 15.84 7.87 87.66 0.69 16.53 16 8 O -0.58 -21.48 16.09 -3.07 -0.05 -21.52 16 9 C 0.10 2.50 6.18 85.63 0.53 3.03 16 10 N -0.57 -14.11 2.09 -777.22 -1.63 -15.74 16 11 C 0.52 11.20 8.32 87.94 0.73 11.93 16 12 O -0.50 -13.86 17.76 -2.90 -0.05 -13.91 16 13 C 0.08 0.82 7.66 85.76 0.66 1.47 16 14 N -0.62 -9.58 3.42 -866.99 -2.96 -12.54 16 15 C 0.11 0.93 11.33 127.77 1.45 2.38 16 16 C 0.69 17.65 8.31 179.44 1.49 19.14 16 17 O -0.58 -19.27 16.92 -3.85 -0.07 -19.33 16 18 C -0.11 -3.52 5.58 30.62 0.17 -3.35 16 19 C -0.12 -4.01 5.93 30.67 0.18 -3.83 16 20 C 0.12 4.79 4.20 86.36 0.36 5.15 16 21 N -0.61 -25.77 2.40 -675.21 -1.62 -27.39 16 22 C -0.23 -11.85 9.06 84.03 0.76 -11.09 16 23 H 0.07 4.01 6.40 -2.91 -0.02 4.00 16 24 C -0.03 -1.60 5.24 84.86 0.44 -1.16 16 25 N -0.95 -57.28 13.97 21.65 0.30 -56.98 16 26 Si 0.93 45.15 24.34 68.60 1.67 46.82 16 27 H -0.28 -12.99 6.63 99.48 0.66 -12.33 16 28 H -0.32 -16.19 7.11 99.48 0.71 -15.48 16 29 H -0.26 -12.24 6.63 99.48 0.66 -11.58 16 30 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.05 1.88 7.67 -2.39 -0.02 1.86 16 32 H 0.05 1.84 6.39 -2.39 -0.02 1.82 16 33 H 0.41 13.36 7.78 -92.71 -0.72 12.64 16 34 H 0.14 3.11 8.01 -2.39 -0.02 3.09 16 35 H 0.14 3.21 7.86 -2.39 -0.02 3.19 16 36 H 0.15 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.17 0.45 8.14 -2.38 -0.02 0.43 16 38 H 0.07 0.91 7.67 -2.39 -0.02 0.89 16 39 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.06 1.93 7.53 -2.39 -0.02 1.92 16 44 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.05 2.28 4.62 -2.38 -0.01 2.27 16 46 H 0.03 1.20 7.03 -2.39 -0.02 1.18 16 47 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -77.61 373.85 2.52 -75.09 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 0.19 Total: 22.07 kcal Atomic # 6 Polarization: 38.53 SS G_CDS: 8.27 Total: 46.80 kcal Atomic # 7 Polarization: -128.57 SS G_CDS: -7.44 Total: -136.01 kcal Atomic # 8 Polarization: -54.60 SS G_CDS: -0.17 Total: -54.77 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.67 Total: 46.82 kcal Total: -77.61 2.52 -75.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994368024.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.997 kcal (2) G-P(sol) polarization free energy of solvation -77.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds