Wall clock time and date at job start Tue Mar 31 2020 22:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 109.46988 * 2 1 4 4 N 1.46501 * 109.46686 * 240.00434 * 2 1 3 5 5 C 1.34783 * 120.00189 * 85.00264 * 4 2 1 6 6 O 1.21280 * 119.99621 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00173 * 179.97438 * 5 4 2 8 8 H 1.08996 * 109.46085 * 40.01629 * 7 5 4 9 9 C 1.53361 * 109.63717 * 280.02982 * 7 5 4 10 10 C 1.50804 * 109.00417 * 286.95845 * 9 7 5 11 11 O 1.21240 * 120.01361 * 145.62720 * 10 9 7 12 12 N 1.34559 * 119.97142 * 325.34872 * 10 9 7 13 13 C 1.34341 * 120.98114 * 4.73884 * 12 10 9 14 14 O 1.21541 * 119.20616 * 191.97384 * 13 12 10 15 15 N 1.34289 * 121.58701 * 11.99327 * 13 12 10 16 16 C 1.52998 * 109.47404 * 120.00575 * 2 1 3 17 17 C 1.53046 * 109.45836 * 60.02433 * 16 2 1 18 18 C 1.53196 * 109.30993 * 178.60472 * 17 16 2 19 19 N 1.46927 * 108.76462 * 54.65352 * 18 17 16 20 20 C 1.36941 * 120.62667 * 126.40625 * 19 18 17 21 21 H 1.07996 * 119.99869 * 331.82280 * 20 19 18 22 22 C 1.38808 * 119.99855 * 151.81884 * 20 19 18 23 23 N 1.31620 * 120.00208 * 343.08582 * 22 20 19 24 24 Si 1.86806 * 120.00111 * 163.07950 * 22 20 19 25 25 H 1.48495 * 109.46664 * 60.00153 * 24 22 20 26 26 H 1.48497 * 109.46937 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.46927 * 300.00457 * 24 22 20 28 28 C 1.46923 * 118.74141 * 306.38431 * 19 18 17 29 29 C 1.53039 * 109.45941 * 299.97354 * 16 2 1 30 30 H 1.09003 * 109.46841 * 299.99516 * 1 2 3 31 31 H 1.08997 * 109.46751 * 59.99624 * 1 2 3 32 32 H 1.08996 * 109.46622 * 179.97438 * 1 2 3 33 33 H 0.97005 * 120.00149 * 264.99855 * 4 2 1 34 34 H 1.09001 * 109.71892 * 167.03866 * 9 7 5 35 35 H 1.08994 * 109.49494 * 46.74947 * 9 7 5 36 36 H 0.96997 * 119.51100 * 184.70961 * 12 10 9 37 37 H 0.96995 * 119.53804 * 185.71357 * 15 13 12 38 38 H 1.08997 * 109.46383 * 180.02562 * 16 2 1 39 39 H 1.08999 * 109.49529 * 298.56372 * 17 16 2 40 40 H 1.08999 * 109.49823 * 58.66610 * 17 16 2 41 41 H 1.08999 * 109.59389 * 294.86866 * 18 17 16 42 42 H 1.08995 * 109.70223 * 174.50898 * 18 17 16 43 43 H 0.96997 * 120.00095 * 179.97438 * 23 22 20 44 44 H 1.08998 * 109.58616 * 293.82124 * 28 19 18 45 45 H 1.09004 * 109.70379 * 173.46767 * 28 19 18 46 46 H 1.09002 * 109.49812 * 301.33760 * 29 16 2 47 47 H 1.08999 * 109.49971 * 61.40039 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1470 -0.0181 -2.3573 6 8 1.8582 1.1586 -2.4117 7 6 2.6498 -0.7283 -3.5876 8 1 2.2152 -1.7268 -3.6336 9 6 4.1782 -0.8406 -3.5295 10 6 4.7806 0.5172 -3.7894 11 8 5.8035 0.8446 -3.2269 12 7 4.1855 1.3631 -4.6502 13 6 3.0061 1.0573 -5.2162 14 8 2.6025 1.7288 -6.1454 15 7 2.2623 0.0279 -4.7799 16 6 2.0401 -0.7214 1.2491 17 6 1.5303 -2.1644 1.2484 18 6 2.0715 -2.8935 2.4823 19 7 1.7087 -2.1261 3.6816 20 6 1.0456 -2.7254 4.7191 21 1 0.3979 -3.5688 4.5307 22 6 1.2059 -2.2488 6.0129 23 7 2.2203 -1.4620 6.3035 24 14 -0.0180 -2.7240 7.3418 25 1 -0.0264 -4.2003 7.5018 26 1 0.3738 -2.0887 8.6256 27 1 -1.3744 -2.2603 6.9541 28 6 2.0713 -0.7038 3.7468 29 6 1.5304 0.0005 2.4986 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3632 -1.0277 -0.0005 33 1 2.2490 -1.6318 -1.1528 34 1 4.5243 -1.5437 -4.2871 35 1 4.4799 -1.1900 -2.5421 36 1 4.6141 2.2063 -4.8648 37 1 1.4572 -0.2184 -5.2616 38 1 3.1301 -0.7209 1.2492 39 1 0.4407 -2.1653 1.2739 40 1 1.8741 -2.6713 0.3467 41 1 3.1564 -2.9727 2.4135 42 1 1.6353 -3.8906 2.5407 43 1 2.3321 -1.1286 7.2075 44 1 3.1562 -0.6045 3.7812 45 1 1.6347 -0.2538 4.6384 46 1 1.8742 1.0349 2.4869 47 1 0.4407 -0.0205 2.5119 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997781968.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:12 Heat of formation + Delta-G solvation = -109.570151 kcal Electronic energy + Delta-G solvation = -30415.468656 eV Core-core repulsion = 26211.526214 eV Total energy + Delta-G solvation = -4203.942442 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.88967 -40.98006 -39.97627 -39.50013 -37.14093 -36.61281 -35.36230 -34.49998 -32.96751 -31.88871 -31.31610 -30.23956 -27.24602 -26.87569 -24.85846 -24.55586 -23.90842 -22.64228 -21.81330 -20.80902 -20.17072 -19.29407 -19.11267 -18.51547 -18.14950 -17.51411 -17.22601 -16.91938 -16.58347 -16.21890 -15.78148 -15.72795 -15.59856 -15.44620 -15.32579 -15.13682 -14.67262 -14.52933 -14.10307 -14.05264 -13.68490 -13.36539 -13.34266 -13.01242 -12.92452 -12.87460 -12.56131 -12.45146 -12.13630 -11.96281 -11.93980 -11.64167 -11.62362 -11.50615 -11.39175 -11.37217 -11.12007 -10.92815 -10.50688 -10.27605 -10.09812 -8.62965 -7.84294 -5.29065 0.61310 1.34529 1.47815 1.50368 1.55249 1.56513 1.82076 2.17825 2.32593 2.53535 3.26674 3.30378 3.38465 3.61575 3.73648 3.85969 3.92049 4.09123 4.10604 4.22894 4.41503 4.46324 4.51424 4.63197 4.65603 4.78748 4.82503 4.85047 4.96621 5.01176 5.08353 5.17472 5.21536 5.27837 5.32933 5.37067 5.48616 5.52161 5.61911 5.70627 5.76195 5.84113 6.16375 6.41184 6.42880 6.53784 7.08624 7.18860 7.21004 7.92479 8.42695 9.21553 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.027065 B = 0.002369 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.292338 B =11814.822312 C =12090.971924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.158 3.842 3 H 0.061 0.939 4 N -0.699 5.699 5 C 0.483 3.517 6 O -0.574 6.574 7 C 0.129 3.871 8 H 0.200 0.800 9 C -0.143 4.143 10 C 0.516 3.484 11 O -0.538 6.538 12 N -0.674 5.674 13 C 0.724 3.276 14 O -0.598 6.598 15 N -0.692 5.692 16 C -0.075 4.075 17 C -0.114 4.114 18 C 0.137 3.863 19 N -0.610 5.610 20 C -0.258 4.258 21 H 0.069 0.931 22 C -0.054 4.054 23 N -0.937 5.937 24 Si 0.963 3.037 25 H -0.274 1.274 26 H -0.299 1.299 27 H -0.279 1.279 28 C 0.178 3.822 29 C -0.124 4.124 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.419 0.581 34 H 0.174 0.826 35 H 0.147 0.853 36 H 0.424 0.576 37 H 0.438 0.562 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.096 0.904 41 H 0.013 0.987 42 H 0.056 0.944 43 H 0.248 0.752 44 H -0.009 1.009 45 H 0.047 0.953 46 H 0.055 0.945 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.207 -4.508 -23.956 24.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.053 3.947 3 H 0.079 0.921 4 N -0.353 5.353 5 C 0.267 3.733 6 O -0.453 6.453 7 C 0.021 3.979 8 H 0.217 0.783 9 C -0.183 4.183 10 C 0.306 3.694 11 O -0.413 6.413 12 N -0.342 5.342 13 C 0.424 3.576 14 O -0.475 6.475 15 N -0.350 5.350 16 C -0.094 4.094 17 C -0.153 4.153 18 C 0.012 3.988 19 N -0.334 5.334 20 C -0.388 4.388 21 H 0.087 0.913 22 C -0.249 4.249 23 N -0.584 5.584 24 Si 0.791 3.209 25 H -0.200 1.200 26 H -0.225 1.225 27 H -0.205 1.205 28 C 0.053 3.947 29 C -0.163 4.163 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.258 0.742 34 H 0.192 0.808 35 H 0.165 0.835 36 H 0.264 0.736 37 H 0.280 0.720 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.114 0.886 41 H 0.031 0.969 42 H 0.074 0.926 43 H 0.057 0.943 44 H 0.009 0.991 45 H 0.066 0.934 46 H 0.074 0.926 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.431 -3.262 -23.893 24.118 hybrid contribution -0.320 0.438 1.321 1.428 sum 0.111 -2.824 -22.572 22.748 Atomic orbital electron populations 1.22145 0.94763 1.02986 1.01438 1.20754 0.94403 0.95859 0.83658 0.92120 1.45998 1.65812 1.14966 1.08496 1.21769 0.77907 0.87520 0.86060 1.90775 1.51222 1.17987 1.85311 1.21479 0.95635 0.99135 0.81695 0.78322 1.22533 0.92023 0.93057 1.10685 1.21727 0.83551 0.88162 0.75950 1.90817 1.25472 1.77519 1.47478 1.44259 1.21403 1.24084 1.44428 1.15701 0.80088 0.80813 0.81000 1.91016 1.72304 1.52403 1.31797 1.44689 1.29095 1.32452 1.28785 1.21164 0.99850 0.95906 0.92449 1.21990 1.01013 0.94145 0.98128 1.21120 0.96286 0.94628 0.86738 1.44311 1.66909 1.05714 1.16471 1.19494 1.18809 1.14061 0.86434 0.91335 1.25779 0.98662 1.01178 0.99261 1.70179 1.29698 1.39226 1.19282 0.85410 0.79175 0.78006 0.78293 1.19958 1.22512 1.20513 1.20515 0.94610 0.84134 0.95490 1.22055 1.00678 0.98158 0.95436 0.92267 0.93353 0.90632 0.74151 0.80836 0.83485 0.73578 0.72023 0.91552 0.91744 0.88575 0.96860 0.92582 0.94331 0.99117 0.93426 0.92648 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.38 8.78 71.98 0.63 -2.75 16 2 C 0.16 3.46 2.40 44.99 0.11 3.57 16 3 H 0.06 1.67 7.58 -2.39 -0.02 1.65 16 4 N -0.70 -9.52 5.00 -442.53 -2.21 -11.73 16 5 C 0.48 7.50 6.69 87.65 0.59 8.09 16 6 O -0.57 -15.45 15.81 -3.03 -0.05 -15.50 16 7 C 0.13 0.65 3.63 44.38 0.16 0.82 16 8 H 0.20 -1.34 8.14 -2.39 -0.02 -1.36 16 9 C -0.14 -0.72 5.74 30.00 0.17 -0.54 16 10 C 0.52 8.77 7.43 87.72 0.65 9.42 16 11 O -0.54 -13.66 17.93 -2.91 -0.05 -13.71 16 12 N -0.67 -12.27 5.18 -441.64 -2.29 -14.56 16 13 C 0.72 13.69 7.98 179.34 1.43 15.12 16 14 O -0.60 -16.04 17.97 -3.85 -0.07 -16.10 16 15 N -0.69 -7.03 4.90 -462.14 -2.27 -9.30 16 16 C -0.07 -1.94 2.14 -10.77 -0.02 -1.96 16 17 C -0.11 -2.75 4.81 30.68 0.15 -2.60 16 18 C 0.14 4.85 6.52 86.36 0.56 5.41 16 19 N -0.61 -28.67 2.99 -699.11 -2.09 -30.77 16 20 C -0.26 -13.58 9.58 84.03 0.81 -12.77 16 21 H 0.07 3.48 7.88 -2.91 -0.02 3.45 16 22 C -0.05 -2.94 4.92 84.86 0.42 -2.53 16 23 N -0.94 -55.08 11.19 21.65 0.24 -54.84 16 24 Si 0.96 44.03 29.59 68.60 2.03 46.06 16 25 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 26 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 27 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 28 C 0.18 8.28 5.30 86.36 0.46 8.74 16 29 C -0.12 -4.28 4.97 30.67 0.15 -4.13 16 30 H 0.06 1.45 6.46 -2.39 -0.02 1.43 16 31 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 1.44 6.46 -2.39 -0.02 1.43 16 33 H 0.42 2.64 6.85 -92.70 -0.63 2.01 16 34 H 0.17 -0.52 8.14 -2.39 -0.02 -0.54 16 35 H 0.15 0.44 8.08 -2.39 -0.02 0.42 16 36 H 0.42 7.80 8.86 -92.71 -0.82 6.98 16 37 H 0.44 2.79 8.90 -92.71 -0.83 1.97 16 38 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.06 1.64 6.51 -2.39 -0.02 1.62 16 40 H 0.10 1.36 6.46 -2.39 -0.02 1.35 16 41 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.06 1.93 7.93 -2.39 -0.02 1.91 16 43 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 44 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 45 H 0.05 2.57 6.07 -2.39 -0.01 2.56 16 46 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.06 2.10 6.51 -2.39 -0.02 2.09 16 Total: -1.00 -85.96 372.63 -1.73 -87.69 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -1.24 Total: 8.87 kcal Atomic # 6 Polarization: 17.62 SS G_CDS: 6.26 Total: 23.89 kcal Atomic # 7 Polarization: -112.57 SS G_CDS: -8.62 Total: -121.19 kcal Atomic # 8 Polarization: -45.15 SS G_CDS: -0.17 Total: -45.32 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -85.96 -1.73 -87.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997781968.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.884 kcal (2) G-P(sol) polarization free energy of solvation -85.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds