Wall clock time and date at job start Tue Mar 31 2020 21:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 109.49052 * 2 1 4 4 C 1.53191 * 109.50088 * 239.93452 * 2 1 3 5 5 N 1.46924 * 108.77327 * 185.37809 * 4 2 1 6 6 C 1.34777 * 120.62813 * 233.58228 * 5 4 2 7 7 O 1.21283 * 120.00463 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99675 * 179.72946 * 6 5 4 9 9 N 1.46499 * 109.47257 * 180.27849 * 8 6 5 10 10 C 1.46416 * 119.53578 * 89.99609 * 9 8 6 11 11 C 1.53045 * 109.51566 * 144.12766 * 10 9 8 12 12 C 1.50806 * 109.18583 * 46.69596 * 11 10 9 13 13 O 1.21230 * 120.01273 * 145.79346 * 12 11 10 14 14 N 1.34561 * 119.96423 * 325.76441 * 12 11 10 15 15 C 1.34291 * 120.93360 * 4.19119 * 14 12 11 16 16 O 1.21535 * 119.17912 * 192.26307 * 15 14 12 17 17 C 1.46921 * 118.73733 * 53.86655 * 5 4 2 18 18 C 1.53624 * 108.54016 * 306.08443 * 17 5 4 19 19 C 1.53037 * 109.52336 * 120.07976 * 2 1 3 20 20 H 1.09010 * 109.46032 * 301.34223 * 19 2 1 21 21 N 1.46501 * 109.46195 * 61.31491 * 19 2 1 22 22 C 1.36933 * 120.00174 * 205.00186 * 21 19 2 23 23 H 1.08002 * 119.99841 * 0.02562 * 22 21 19 24 24 C 1.38814 * 120.00210 * 180.02562 * 22 21 19 25 25 N 1.31624 * 119.99429 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00081 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47101 * 60.00042 * 26 24 22 28 28 H 1.48495 * 109.46787 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.47139 * 299.99841 * 26 24 22 30 30 H 1.09003 * 109.46901 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47585 * 300.06613 * 1 2 3 32 32 H 1.08999 * 109.46897 * 60.06981 * 1 2 3 33 33 H 1.09006 * 109.58153 * 65.59193 * 4 2 1 34 34 H 1.08997 * 109.58756 * 305.16741 * 4 2 1 35 35 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 36 36 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 37 37 H 1.09002 * 109.46326 * 264.13991 * 10 9 8 38 38 H 1.09000 * 109.46187 * 24.12067 * 10 9 8 39 39 H 1.09000 * 109.51624 * 166.61033 * 11 10 9 40 40 H 1.09003 * 109.51656 * 286.71952 * 11 10 9 41 41 H 0.97005 * 119.49890 * 184.45757 * 14 12 11 42 42 H 1.09000 * 109.59076 * 65.92234 * 17 5 4 43 43 H 1.09000 * 109.58577 * 186.34777 * 17 5 4 44 44 H 1.08990 * 109.63928 * 294.86618 * 18 17 5 45 45 H 1.09006 * 109.45894 * 174.74079 * 18 17 5 46 46 H 0.96999 * 119.99234 * 24.99633 * 21 19 2 47 47 H 0.96994 * 119.99339 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0414 -0.7234 -1.2497 5 7 3.5048 -0.8280 -1.1700 6 6 4.2808 -0.3848 -2.1790 7 8 3.7724 0.1063 -3.1645 8 6 5.7806 -0.4935 -2.0796 9 7 6.3916 0.0592 -3.2910 10 6 6.7395 1.4806 -3.3398 11 6 8.0316 1.6635 -4.1394 12 6 7.9427 0.8635 -5.4147 13 8 8.4644 1.2773 -6.4277 14 7 7.2844 -0.3100 -5.4274 15 6 6.6297 -0.7461 -4.3390 16 8 6.2389 -1.8963 -4.3038 17 6 4.1057 -1.4305 0.0276 18 6 3.5715 -0.6940 1.2654 19 6 2.0415 -0.7229 1.2481 20 1 1.6590 -0.2244 2.1389 21 7 1.5797 -2.1132 1.2306 22 6 1.4501 -2.8064 2.4043 23 1 1.6879 -2.3282 3.3430 24 6 1.0131 -4.1239 2.3877 25 7 0.7228 -4.7064 1.2437 26 14 0.8370 -5.0698 3.9888 27 1 -0.1407 -4.3786 4.8672 28 1 0.3570 -6.4452 3.7008 29 1 2.1541 -5.1374 4.6712 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5148 0.8893 32 1 -0.3633 0.5127 -0.8906 33 1 1.7633 -0.1576 -2.1389 34 1 1.6059 -1.7214 -1.2982 35 1 6.1286 0.0644 -1.2102 36 1 6.0629 -1.5411 -1.9759 37 1 5.9335 2.0355 -3.8201 38 1 6.8838 1.8542 -2.3261 39 1 8.1649 2.7183 -4.3797 40 1 8.8783 1.3150 -3.5480 41 1 7.2863 -0.8501 -6.2332 42 1 3.8351 -2.4850 0.0812 43 1 5.1902 -1.3314 -0.0185 44 1 3.9160 0.3399 1.2536 45 1 3.9345 -1.1881 2.1667 46 1 1.3657 -2.5424 0.3875 47 1 0.4170 -5.6269 1.2321 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036263124.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:44 Heat of formation + Delta-G solvation = -73.957771 kcal Electronic energy + Delta-G solvation = -30602.966850 eV Core-core repulsion = 26400.568677 eV Total energy + Delta-G solvation = -4202.398173 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.94621 -40.11125 -39.12374 -37.75347 -36.40791 -34.89730 -34.32744 -32.92739 -31.85362 -31.41526 -29.21582 -28.46427 -25.96726 -25.41199 -24.79643 -23.52560 -23.21405 -21.70320 -20.31314 -19.10107 -18.66072 -18.25285 -17.96583 -17.43324 -17.17975 -16.68330 -15.99738 -15.47988 -15.16333 -15.00280 -14.82088 -14.72320 -14.57557 -14.25089 -13.99993 -13.78904 -13.41831 -13.32941 -13.10793 -12.90923 -12.56586 -12.35766 -12.22914 -11.93141 -11.57662 -11.41806 -11.23624 -10.97512 -10.92197 -10.83695 -10.56899 -10.53617 -10.51801 -10.48966 -10.24784 -10.05620 -9.87885 -9.58775 -9.04539 -8.94834 -8.27431 -7.01327 -5.81504 -3.10552 1.42029 1.97190 2.66722 2.74773 2.92285 3.27331 3.39675 3.44900 3.46312 3.95106 4.10584 4.45473 4.51399 4.54804 4.62348 4.85595 4.94698 5.10789 5.15928 5.26282 5.29572 5.32559 5.44838 5.54010 5.63159 5.67546 5.74748 5.78723 5.89014 6.02422 6.05852 6.12553 6.22113 6.26395 6.35978 6.46054 6.58375 6.63857 6.71510 6.88361 6.96089 7.04533 7.18693 7.63729 7.64995 7.87961 8.30605 8.36783 9.48281 10.04755 10.39477 11.40667 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020711 B = 0.002632 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.618999 B =10634.301897 C =11101.165552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 H 0.065 0.935 4 C 0.120 3.880 5 N -0.598 5.598 6 C 0.497 3.503 7 O -0.545 6.545 8 C 0.111 3.889 9 N -0.599 5.599 10 C 0.110 3.890 11 C -0.157 4.157 12 C 0.524 3.476 13 O -0.507 6.507 14 N -0.674 5.674 15 C 0.713 3.287 16 O -0.547 6.547 17 C 0.112 3.888 18 C -0.149 4.149 19 C 0.178 3.822 20 H 0.051 0.949 21 N -0.719 5.719 22 C -0.240 4.240 23 H 0.069 0.931 24 C -0.011 4.011 25 N -0.931 5.931 26 Si 0.905 3.095 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.043 0.957 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.127 0.873 40 H 0.115 0.885 41 H 0.426 0.574 42 H 0.088 0.912 43 H 0.068 0.932 44 H 0.049 0.951 45 H 0.075 0.925 46 H 0.384 0.616 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.923 14.675 -5.991 21.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.127 4.127 3 H 0.083 0.917 4 C -0.002 4.002 5 N -0.331 5.331 6 C 0.283 3.717 7 O -0.423 6.423 8 C -0.015 4.015 9 N -0.336 5.336 10 C -0.013 4.013 11 C -0.197 4.197 12 C 0.312 3.688 13 O -0.379 6.379 14 N -0.343 5.343 15 C 0.415 3.585 16 O -0.420 6.420 17 C -0.011 4.011 18 C -0.191 4.191 19 C 0.068 3.932 20 H 0.069 0.931 21 N -0.361 5.361 22 C -0.371 4.371 23 H 0.087 0.913 24 C -0.207 4.207 25 N -0.579 5.579 26 Si 0.736 3.264 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.132 0.868 36 H 0.137 0.863 37 H 0.100 0.900 38 H 0.122 0.878 39 H 0.145 0.855 40 H 0.133 0.867 41 H 0.268 0.732 42 H 0.106 0.894 43 H 0.086 0.914 44 H 0.067 0.933 45 H 0.093 0.907 46 H 0.219 0.781 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.698 14.564 -6.691 21.083 hybrid contribution -0.193 -1.027 0.429 1.129 sum 13.505 13.537 -6.262 20.121 Atomic orbital electron populations 1.21670 0.94260 1.03235 1.00402 1.21696 0.96497 0.98727 0.95761 0.91708 1.21644 0.78460 1.01635 0.98494 1.48117 1.07252 1.59497 1.18197 1.20875 0.89458 0.78357 0.82981 1.90666 1.75147 1.45522 1.30926 1.21424 0.91046 1.02987 0.86046 1.46552 1.63053 1.09086 1.14862 1.21687 0.95744 0.81188 1.02684 1.22274 1.00518 1.03058 0.93896 1.20971 0.76337 0.80366 0.91085 1.90793 1.43994 1.68213 1.34911 1.44239 1.50339 1.23072 1.16616 1.15507 0.78441 0.84793 0.79808 1.91043 1.54500 1.16932 1.79515 1.21869 0.95991 0.99397 0.83808 1.22605 1.00615 0.98456 0.97375 1.20210 0.90765 0.87417 0.94828 0.93142 1.42477 1.79013 1.07650 1.06970 1.19153 1.37589 0.93842 0.86530 0.91314 1.24716 1.02186 0.97211 0.96578 1.69639 1.51422 1.13149 1.23714 0.86313 0.77732 0.79253 0.83111 1.21386 1.21810 1.21356 0.91020 0.92802 0.93810 0.89909 0.90632 0.86766 0.86304 0.89985 0.87845 0.85510 0.86680 0.73220 0.89353 0.91394 0.93274 0.90667 0.78062 0.93411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.06 37.16 0.34 -1.80 16 2 C -0.11 -1.64 2.67 -90.50 -0.24 -1.89 16 3 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 4 C 0.12 1.96 5.42 -3.71 -0.02 1.94 16 5 N -0.60 -8.91 2.97 -172.51 -0.51 -9.42 16 6 C 0.50 7.23 7.77 -10.98 -0.09 7.15 16 7 O -0.54 -9.71 15.84 5.55 0.09 -9.62 16 8 C 0.11 1.14 4.17 -5.19 -0.02 1.12 16 9 N -0.60 -5.96 2.28 -181.16 -0.41 -6.37 16 10 C 0.11 0.66 6.64 -4.06 -0.03 0.64 16 11 C -0.16 -0.77 6.28 -27.81 -0.17 -0.95 16 12 C 0.52 4.75 7.76 -11.03 -0.09 4.66 16 13 O -0.51 -6.12 17.93 5.60 0.10 -6.02 16 14 N -0.67 -6.78 5.18 -16.03 -0.08 -6.86 16 15 C 0.71 8.80 8.21 -87.78 -0.72 8.08 16 16 O -0.55 -8.94 16.65 5.34 0.09 -8.85 16 17 C 0.11 1.57 6.11 -3.49 -0.02 1.55 16 18 C -0.15 -2.18 5.80 -26.39 -0.15 -2.33 16 19 C 0.18 3.10 2.53 -67.89 -0.17 2.93 16 20 H 0.05 0.92 8.08 -51.92 -0.42 0.50 16 21 N -0.72 -15.89 3.64 -53.38 -0.19 -16.08 16 22 C -0.24 -6.07 9.93 -15.06 -0.15 -6.22 16 23 H 0.07 1.69 7.83 -52.49 -0.41 1.28 16 24 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 25 N -0.93 -26.74 13.06 55.49 0.72 -26.02 16 26 Si 0.90 21.40 29.55 -169.99 -5.02 16.38 16 27 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 30 H 0.07 1.31 7.54 -51.93 -0.39 0.92 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.08 1.38 7.01 -51.93 -0.36 1.02 16 34 H 0.08 1.41 6.64 -51.93 -0.34 1.06 16 35 H 0.11 0.72 7.38 -51.92 -0.38 0.34 16 36 H 0.12 1.29 7.22 -51.93 -0.37 0.91 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.10 0.32 7.79 -51.93 -0.40 -0.08 16 39 H 0.13 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.12 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.43 3.97 8.86 -40.82 -0.36 3.61 16 42 H 0.09 1.55 7.74 -51.93 -0.40 1.15 16 43 H 0.07 0.71 5.93 -51.93 -0.31 0.40 16 44 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 46 H 0.38 9.24 5.92 -40.82 -0.24 9.00 16 47 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 377.63 15.07 5.69 5.69 Total: -1.00 -34.82 377.63 -8.09 -42.91 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -6.92 Total: 9.77 kcal Atomic # 6 Polarization: 16.12 SS G_CDS: -1.63 Total: 14.49 kcal Atomic # 7 Polarization: -64.27 SS G_CDS: -0.48 Total: -64.75 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: 0.28 Total: -24.49 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.82 -8.09 -42.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036263124.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.047 kcal (2) G-P(sol) polarization free energy of solvation -34.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds