Wall clock time and date at job start Tue Mar 31 2020 21:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 109.49052 * 2 1 4 4 C 1.53191 * 109.50088 * 239.93452 * 2 1 3 5 5 N 1.46924 * 108.77327 * 185.37809 * 4 2 1 6 6 C 1.34777 * 120.62813 * 233.58228 * 5 4 2 7 7 O 1.21283 * 120.00463 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99675 * 179.72946 * 6 5 4 9 9 N 1.46499 * 109.47257 * 180.27849 * 8 6 5 10 10 C 1.46416 * 119.53578 * 89.99609 * 9 8 6 11 11 C 1.53045 * 109.51566 * 144.12766 * 10 9 8 12 12 C 1.50806 * 109.18583 * 46.69596 * 11 10 9 13 13 O 1.21230 * 120.01273 * 145.79346 * 12 11 10 14 14 N 1.34561 * 119.96423 * 325.76441 * 12 11 10 15 15 C 1.34291 * 120.93360 * 4.19119 * 14 12 11 16 16 O 1.21535 * 119.17912 * 192.26307 * 15 14 12 17 17 C 1.46921 * 118.73733 * 53.86655 * 5 4 2 18 18 C 1.53624 * 108.54016 * 306.08443 * 17 5 4 19 19 C 1.53037 * 109.52336 * 120.07976 * 2 1 3 20 20 H 1.09010 * 109.46032 * 301.34223 * 19 2 1 21 21 N 1.46501 * 109.46195 * 61.31491 * 19 2 1 22 22 C 1.36933 * 120.00174 * 205.00186 * 21 19 2 23 23 H 1.08002 * 119.99841 * 0.02562 * 22 21 19 24 24 C 1.38814 * 120.00210 * 180.02562 * 22 21 19 25 25 N 1.31624 * 119.99429 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00081 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47101 * 60.00042 * 26 24 22 28 28 H 1.48495 * 109.46787 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.47139 * 299.99841 * 26 24 22 30 30 H 1.09003 * 109.46901 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47585 * 300.06613 * 1 2 3 32 32 H 1.08999 * 109.46897 * 60.06981 * 1 2 3 33 33 H 1.09006 * 109.58153 * 65.59193 * 4 2 1 34 34 H 1.08997 * 109.58756 * 305.16741 * 4 2 1 35 35 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 36 36 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 37 37 H 1.09002 * 109.46326 * 264.13991 * 10 9 8 38 38 H 1.09000 * 109.46187 * 24.12067 * 10 9 8 39 39 H 1.09000 * 109.51624 * 166.61033 * 11 10 9 40 40 H 1.09003 * 109.51656 * 286.71952 * 11 10 9 41 41 H 0.97005 * 119.49890 * 184.45757 * 14 12 11 42 42 H 1.09000 * 109.59076 * 65.92234 * 17 5 4 43 43 H 1.09000 * 109.58577 * 186.34777 * 17 5 4 44 44 H 1.08990 * 109.63928 * 294.86618 * 18 17 5 45 45 H 1.09006 * 109.45894 * 174.74079 * 18 17 5 46 46 H 0.96999 * 119.99234 * 24.99633 * 21 19 2 47 47 H 0.96994 * 119.99339 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0414 -0.7234 -1.2497 5 7 3.5048 -0.8280 -1.1700 6 6 4.2808 -0.3848 -2.1790 7 8 3.7724 0.1063 -3.1645 8 6 5.7806 -0.4935 -2.0796 9 7 6.3916 0.0592 -3.2910 10 6 6.7395 1.4806 -3.3398 11 6 8.0316 1.6635 -4.1394 12 6 7.9427 0.8635 -5.4147 13 8 8.4644 1.2773 -6.4277 14 7 7.2844 -0.3100 -5.4274 15 6 6.6297 -0.7461 -4.3390 16 8 6.2389 -1.8963 -4.3038 17 6 4.1057 -1.4305 0.0276 18 6 3.5715 -0.6940 1.2654 19 6 2.0415 -0.7229 1.2481 20 1 1.6590 -0.2244 2.1389 21 7 1.5797 -2.1132 1.2306 22 6 1.4501 -2.8064 2.4043 23 1 1.6879 -2.3282 3.3430 24 6 1.0131 -4.1239 2.3877 25 7 0.7228 -4.7064 1.2437 26 14 0.8370 -5.0698 3.9888 27 1 -0.1407 -4.3786 4.8672 28 1 0.3570 -6.4452 3.7008 29 1 2.1541 -5.1374 4.6712 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5148 0.8893 32 1 -0.3633 0.5127 -0.8906 33 1 1.7633 -0.1576 -2.1389 34 1 1.6059 -1.7214 -1.2982 35 1 6.1286 0.0644 -1.2102 36 1 6.0629 -1.5411 -1.9759 37 1 5.9335 2.0355 -3.8201 38 1 6.8838 1.8542 -2.3261 39 1 8.1649 2.7183 -4.3797 40 1 8.8783 1.3150 -3.5480 41 1 7.2863 -0.8501 -6.2332 42 1 3.8351 -2.4850 0.0812 43 1 5.1902 -1.3314 -0.0185 44 1 3.9160 0.3399 1.2536 45 1 3.9345 -1.1881 2.1667 46 1 1.3657 -2.5424 0.3875 47 1 0.4170 -5.6269 1.2321 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036263124.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:43 Heat of formation + Delta-G solvation = -99.826044 kcal Electronic energy + Delta-G solvation = -30604.088583 eV Core-core repulsion = 26400.568677 eV Total energy + Delta-G solvation = -4203.519906 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.74981 -41.25706 -40.04916 -39.01921 -37.25052 -35.82330 -35.75147 -34.46304 -32.94649 -32.45721 -30.85802 -29.41046 -27.24515 -26.17824 -25.99547 -25.21504 -24.04637 -22.99168 -21.31703 -20.04820 -19.60231 -19.33847 -19.13928 -18.79417 -18.27061 -17.60115 -16.98342 -16.70298 -16.30935 -16.14137 -15.92946 -15.70131 -15.59070 -15.45560 -15.43364 -14.86569 -14.68668 -14.36790 -14.22906 -14.04700 -13.59667 -13.54722 -13.02956 -12.96613 -12.88440 -12.79995 -12.65691 -12.53198 -12.34425 -12.14967 -11.91241 -11.88608 -11.84284 -11.53377 -11.39331 -11.38252 -11.14985 -11.08309 -10.80476 -9.91588 -9.54845 -8.88235 -7.85712 -5.11570 0.65427 1.18755 1.51426 1.52644 1.58544 1.61496 1.89985 2.15624 2.23723 2.62459 3.40285 3.47992 3.51498 3.64999 3.90494 3.91928 3.99762 4.10960 4.15003 4.16678 4.32119 4.37485 4.45276 4.46379 4.56919 4.61292 4.72731 4.77046 4.87148 4.89658 4.94686 4.99230 5.08742 5.09517 5.18296 5.29013 5.34576 5.38353 5.44209 5.51912 5.64406 5.70644 6.27852 6.36099 6.43188 6.50325 7.00894 7.17433 7.43315 8.21916 8.43339 9.37621 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020711 B = 0.002632 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.618999 B =10634.301897 C =11101.165552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.094 4.094 3 H 0.093 0.907 4 C 0.125 3.875 5 N -0.599 5.599 6 C 0.493 3.507 7 O -0.583 6.583 8 C 0.114 3.886 9 N -0.594 5.594 10 C 0.105 3.895 11 C -0.144 4.144 12 C 0.522 3.478 13 O -0.541 6.541 14 N -0.675 5.675 15 C 0.710 3.290 16 O -0.598 6.598 17 C 0.116 3.884 18 C -0.140 4.140 19 C 0.169 3.831 20 H 0.048 0.952 21 N -0.727 5.727 22 C -0.222 4.222 23 H 0.078 0.922 24 C -0.077 4.077 25 N -0.972 5.972 26 Si 0.963 3.037 27 H -0.282 1.282 28 H -0.306 1.306 29 H -0.277 1.277 30 H 0.035 0.965 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.040 0.960 35 H 0.171 0.829 36 H 0.114 0.886 37 H 0.070 0.930 38 H 0.149 0.851 39 H 0.151 0.849 40 H 0.144 0.856 41 H 0.424 0.576 42 H 0.045 0.955 43 H 0.116 0.884 44 H 0.089 0.911 45 H 0.068 0.932 46 H 0.371 0.629 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.410 17.883 -4.084 24.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.114 4.114 3 H 0.111 0.889 4 C 0.002 3.998 5 N -0.331 5.331 6 C 0.281 3.719 7 O -0.463 6.463 8 C -0.012 4.012 9 N -0.329 5.329 10 C -0.016 4.016 11 C -0.184 4.184 12 C 0.312 3.688 13 O -0.416 6.416 14 N -0.342 5.342 15 C 0.412 3.588 16 O -0.475 6.475 17 C -0.006 4.006 18 C -0.180 4.180 19 C 0.060 3.940 20 H 0.066 0.934 21 N -0.368 5.368 22 C -0.354 4.354 23 H 0.096 0.904 24 C -0.269 4.269 25 N -0.624 5.624 26 Si 0.794 3.206 27 H -0.209 1.209 28 H -0.233 1.233 29 H -0.203 1.203 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.058 0.942 35 H 0.188 0.812 36 H 0.132 0.868 37 H 0.088 0.912 38 H 0.167 0.833 39 H 0.169 0.831 40 H 0.162 0.838 41 H 0.265 0.735 42 H 0.064 0.936 43 H 0.134 0.866 44 H 0.107 0.893 45 H 0.087 0.913 46 H 0.204 0.796 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 16.230 17.868 -4.737 24.599 hybrid contribution -0.983 -1.913 -0.234 2.164 sum 15.247 15.955 -4.971 22.622 Atomic orbital electron populations 1.21619 0.94686 1.01208 1.01663 1.21605 0.96105 0.99551 0.94108 0.88894 1.21412 0.79962 0.99636 0.98824 1.48165 1.06508 1.59529 1.18870 1.21722 0.91286 0.77059 0.81821 1.90653 1.76278 1.47226 1.32140 1.21613 0.87596 1.04019 0.88013 1.46720 1.61846 1.10438 1.13896 1.22036 0.95676 0.78517 1.05391 1.22386 1.00974 1.03624 0.91375 1.21859 0.74902 0.79751 0.92267 1.90782 1.45413 1.68781 1.36657 1.44295 1.50200 1.23641 1.16101 1.15764 0.78129 0.84491 0.80464 1.91009 1.56625 1.19281 1.80627 1.21861 0.98635 0.96820 0.83309 1.22463 0.97619 1.00786 0.97131 1.20511 0.93016 0.84827 0.95621 0.93378 1.42638 1.79212 1.09482 1.05473 1.19550 1.34408 0.93684 0.87800 0.90389 1.25406 1.03867 0.98628 0.98986 1.69811 1.54094 1.12807 1.25655 0.85354 0.77915 0.77259 0.80083 1.20887 1.23313 1.20316 0.94628 0.92025 0.92045 0.90479 0.94203 0.81169 0.86808 0.91186 0.83336 0.83072 0.83805 0.73543 0.93635 0.86639 0.89289 0.91329 0.79570 0.94557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.10 9.06 71.98 0.65 -3.45 16 2 C -0.09 -2.75 2.67 -10.72 -0.03 -2.78 16 3 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 4 C 0.12 4.09 5.42 86.36 0.47 4.56 16 5 N -0.60 -16.91 2.97 -818.07 -2.43 -19.34 16 6 C 0.49 13.33 7.77 87.66 0.68 14.01 16 7 O -0.58 -20.27 15.84 -3.04 -0.05 -20.32 16 8 C 0.11 1.91 4.17 85.63 0.36 2.27 16 9 N -0.59 -10.04 2.28 -845.61 -1.93 -11.97 16 10 C 0.10 0.80 6.64 86.41 0.57 1.37 16 11 C -0.14 -0.81 6.28 29.90 0.19 -0.63 16 12 C 0.52 8.58 7.76 87.72 0.68 9.26 16 13 O -0.54 -12.62 17.93 -2.88 -0.05 -12.67 16 14 N -0.67 -13.30 5.18 -441.72 -2.29 -15.59 16 15 C 0.71 16.93 8.21 179.36 1.47 18.40 16 16 O -0.60 -19.91 16.65 -3.83 -0.06 -19.97 16 17 C 0.12 2.99 6.11 86.51 0.53 3.52 16 18 C -0.14 -3.59 5.80 30.82 0.18 -3.42 16 19 C 0.17 5.59 2.53 45.02 0.11 5.71 16 20 H 0.05 1.64 8.08 -2.38 -0.02 1.62 16 21 N -0.73 -32.53 3.64 -322.80 -1.17 -33.71 16 22 C -0.22 -11.26 9.93 84.03 0.83 -10.43 16 23 H 0.08 3.75 7.83 -2.91 -0.02 3.72 16 24 C -0.08 -4.22 5.50 84.86 0.47 -3.75 16 25 N -0.97 -58.12 13.06 21.65 0.28 -57.83 16 26 Si 0.96 44.65 29.55 68.60 2.03 46.68 16 27 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 28 H -0.31 -14.77 7.11 99.48 0.71 -14.07 16 29 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 30 H 0.03 1.34 7.54 -2.39 -0.02 1.32 16 31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.08 2.60 7.01 -2.38 -0.02 2.58 16 34 H 0.04 1.58 6.64 -2.39 -0.02 1.57 16 35 H 0.17 0.95 7.38 -2.38 -0.02 0.93 16 36 H 0.11 2.15 7.22 -2.39 -0.02 2.14 16 37 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.15 -0.12 7.79 -2.39 -0.02 -0.14 16 39 H 0.15 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.14 0.10 8.14 -2.39 -0.02 0.08 16 41 H 0.42 8.24 8.86 -92.70 -0.82 7.42 16 42 H 0.05 1.60 7.74 -2.39 -0.02 1.58 16 43 H 0.12 1.87 5.93 -2.39 -0.01 1.86 16 44 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 46 H 0.37 18.67 5.92 -92.71 -0.55 18.12 16 47 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -82.08 377.63 1.14 -80.94 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: -0.35 Total: 29.12 kcal Atomic # 6 Polarization: 27.48 SS G_CDS: 7.16 Total: 34.65 kcal Atomic # 7 Polarization: -130.90 SS G_CDS: -7.54 Total: -138.44 kcal Atomic # 8 Polarization: -52.79 SS G_CDS: -0.16 Total: -52.96 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -82.08 1.14 -80.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036263124.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.883 kcal (2) G-P(sol) polarization free energy of solvation -82.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds