Wall clock time and date at job start Tue Mar 31 2020 21:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.52343 * 2 1 4 4 C 1.53189 * 109.48578 * 239.90452 * 2 1 3 5 5 N 1.46929 * 108.76362 * 185.40122 * 4 2 1 6 6 C 1.34774 * 120.63078 * 233.63989 * 5 4 2 7 7 O 1.21287 * 119.99784 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.00086 * 179.97438 * 6 5 4 9 9 N 1.46497 * 109.47274 * 180.02562 * 8 6 5 10 10 C 1.47309 * 126.69153 * 89.99879 * 9 8 6 11 11 C 1.51588 * 103.59742 * 179.97438 * 10 9 8 12 12 O 1.21229 * 127.16194 * 180.02562 * 11 10 9 13 13 N 1.34774 * 105.68175 * 0.02562 * 11 10 9 14 14 C 1.46501 * 124.17779 * 179.97438 * 13 11 10 15 15 C 1.33793 * 111.64448 * 359.76457 * 13 11 10 16 16 O 1.21533 * 123.77531 * 180.24671 * 15 13 11 17 17 C 1.46920 * 118.73689 * 53.62044 * 5 4 2 18 18 C 1.53197 * 108.77526 * 306.38877 * 17 5 4 19 19 C 1.53037 * 109.31323 * 54.63626 * 18 17 5 20 20 H 1.09004 * 109.45606 * 58.64216 * 19 18 17 21 21 N 1.46496 * 109.45869 * 178.61151 * 19 18 17 22 22 C 1.36934 * 120.00548 * 275.02700 * 21 19 18 23 23 H 1.08004 * 119.99288 * 0.02562 * 22 21 19 24 24 C 1.38805 * 120.00389 * 180.02562 * 22 21 19 25 25 N 1.31624 * 120.00257 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 119.99929 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.47174 * 270.00277 * 26 24 22 28 28 H 1.48501 * 109.47062 * 30.00228 * 26 24 22 29 29 H 1.48499 * 109.46981 * 150.00382 * 26 24 22 30 30 H 1.09003 * 109.47168 * 299.92435 * 1 2 3 31 31 H 1.09006 * 109.46825 * 59.92238 * 1 2 3 32 32 H 1.08998 * 109.47235 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.58446 * 65.62127 * 4 2 1 34 34 H 1.08995 * 109.71837 * 305.25979 * 4 2 1 35 35 H 1.09000 * 109.47030 * 299.99751 * 8 6 5 36 36 H 1.09001 * 109.47174 * 59.99962 * 8 6 5 37 37 H 1.09008 * 110.60172 * 298.49061 * 10 9 8 38 38 H 1.09004 * 110.59941 * 61.28368 * 10 9 8 39 39 H 1.08997 * 109.47015 * 0.02907 * 14 13 11 40 40 H 1.08998 * 109.46594 * 120.02525 * 14 13 11 41 41 H 1.08998 * 109.47299 * 240.02492 * 14 13 11 42 42 H 1.09007 * 109.58614 * 186.60400 * 17 5 4 43 43 H 1.08998 * 109.70853 * 66.24609 * 17 5 4 44 44 H 1.09001 * 109.49542 * 294.68536 * 18 17 5 45 45 H 1.08999 * 109.52335 * 174.60517 * 18 17 5 46 46 H 0.96999 * 119.99694 * 95.03224 * 21 19 18 47 47 H 0.97001 * 119.99885 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0411 -0.7242 -1.2495 5 7 3.5044 -0.8292 -1.1696 6 6 4.2808 -0.3857 -2.1780 7 8 3.7726 0.1053 -3.1637 8 6 5.7803 -0.5000 -2.0809 9 7 6.3915 0.0488 -3.2939 10 6 6.8071 1.4445 -3.5161 11 6 7.3650 1.4301 -4.9255 12 8 7.8294 2.3670 -5.5388 13 7 7.2375 0.1590 -5.3548 14 6 7.6547 -0.3082 -6.6792 15 6 6.6870 -0.6246 -4.4205 16 8 6.4750 -1.8115 -4.5733 17 6 4.1052 -1.4265 0.0308 18 6 3.5708 -0.6946 1.2660 19 6 2.0408 -0.7229 1.2485 20 1 1.6969 -1.7572 1.2354 21 7 1.5265 -0.0528 2.4453 22 6 1.3958 -0.7490 3.6172 23 1 1.6723 -1.7922 3.6591 24 6 0.9081 -0.1141 4.7511 25 7 0.7829 -0.7832 5.8776 26 14 0.4307 1.6904 4.6787 27 1 1.6086 2.5282 5.0192 28 1 -0.0351 2.0246 3.3088 29 1 -0.6610 1.9530 5.6505 30 1 -0.3634 0.5127 0.8907 31 1 -0.3633 0.5151 -0.8894 32 1 -0.3633 -1.0276 -0.0005 33 1 1.7633 -0.1585 -2.1389 34 1 1.6053 -1.7219 -1.3002 35 1 6.1317 0.0581 -1.2130 36 1 6.0587 -1.5486 -1.9757 37 1 5.9501 2.1150 -3.4499 38 1 7.5757 1.7345 -2.7996 39 1 8.0749 0.5250 -7.2425 40 1 8.4077 -1.0885 -6.5686 41 1 6.7921 -0.7085 -7.2117 42 1 5.1896 -1.3242 -0.0138 43 1 3.8399 -2.4821 0.0883 44 1 3.9157 0.3393 1.2538 45 1 3.9335 -1.1886 2.1674 46 1 1.2786 0.8842 2.4077 47 1 0.4424 -0.3394 6.6701 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036263545.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:59 Heat of formation + Delta-G solvation = -46.684064 kcal Electronic energy + Delta-G solvation = -30107.077412 eV Core-core repulsion = 25905.861915 eV Total energy + Delta-G solvation = -4201.215496 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.65286 -40.30551 -38.95528 -37.91681 -36.44222 -35.51114 -34.87100 -33.06250 -31.66197 -30.79707 -29.90005 -27.62981 -27.46939 -26.06145 -24.97205 -22.95288 -22.62340 -21.68393 -20.94933 -20.10548 -19.24118 -18.06111 -17.71872 -17.56024 -17.07587 -16.93584 -16.13037 -16.02187 -15.29924 -15.02941 -14.98950 -14.56935 -14.50904 -14.36280 -14.29345 -13.89660 -13.60331 -13.37480 -13.32487 -13.08755 -12.98940 -12.59832 -12.51272 -12.35037 -12.03064 -11.83441 -11.50548 -11.28104 -11.12442 -10.97953 -10.78267 -10.62605 -10.60254 -10.35414 -10.28961 -10.17819 -9.86014 -9.65083 -9.26565 -9.00098 -8.67080 -7.35087 -5.84384 -3.20327 1.25220 1.61020 2.41307 2.45801 2.63107 3.00625 3.30985 3.34002 3.40220 3.64202 4.21646 4.25198 4.51948 4.59726 4.68952 4.81660 4.83313 4.87204 4.93302 4.96727 5.06385 5.12697 5.15049 5.22963 5.33204 5.38552 5.45775 5.53074 5.60381 5.75517 5.87099 5.88988 5.96250 6.02098 6.18255 6.21253 6.31475 6.40444 6.60816 6.68555 6.70382 6.85043 6.95063 7.28668 7.70076 7.90751 7.99645 8.34597 9.12547 9.85316 10.04827 11.33736 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.022870 B = 0.002390 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.013824 B =11714.900009 C =11882.629263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 H 0.068 0.932 4 C 0.121 3.879 5 N -0.603 5.603 6 C 0.495 3.505 7 O -0.539 6.539 8 C 0.134 3.866 9 N -0.609 5.609 10 C 0.064 3.936 11 C 0.527 3.473 12 O -0.473 6.473 13 N -0.579 5.579 14 C 0.089 3.911 15 C 0.706 3.294 16 O -0.538 6.538 17 C 0.104 3.896 18 C -0.153 4.153 19 C 0.188 3.812 20 H 0.058 0.942 21 N -0.745 5.745 22 C -0.243 4.243 23 H 0.090 0.910 24 C 0.006 3.994 25 N -0.932 5.932 26 Si 0.883 3.117 27 H -0.285 1.285 28 H -0.277 1.277 29 H -0.291 1.291 30 H 0.067 0.933 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.059 0.941 45 H 0.083 0.917 46 H 0.361 0.639 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.656 1.740 -19.998 24.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.133 4.133 3 H 0.087 0.913 4 C -0.001 4.001 5 N -0.337 5.337 6 C 0.280 3.720 7 O -0.416 6.416 8 C 0.009 3.991 9 N -0.347 5.347 10 C -0.062 4.062 11 C 0.315 3.685 12 O -0.343 6.343 13 N -0.325 5.325 14 C -0.052 4.052 15 C 0.409 3.591 16 O -0.411 6.411 17 C -0.019 4.019 18 C -0.194 4.194 19 C 0.078 3.922 20 H 0.076 0.924 21 N -0.387 5.387 22 C -0.373 4.373 23 H 0.108 0.892 24 C -0.190 4.190 25 N -0.580 5.580 26 Si 0.713 3.287 27 H -0.212 1.212 28 H -0.203 1.203 29 H -0.218 1.218 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.078 0.922 45 H 0.102 0.898 46 H 0.194 0.806 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.475 1.597 -20.713 24.762 hybrid contribution -0.435 1.311 0.300 1.413 sum 13.041 2.907 -20.413 24.397 Atomic orbital electron populations 1.21679 0.94105 1.02203 1.01618 1.21784 0.96640 0.99960 0.94875 0.91341 1.21699 0.78257 1.01086 0.99091 1.48179 1.07310 1.60125 1.18051 1.21005 0.89618 0.78330 0.82999 1.90699 1.75122 1.44833 1.30933 1.21246 0.90265 1.02520 0.85096 1.46988 1.63530 1.09359 1.14823 1.22549 1.02953 0.85412 0.95239 1.20840 0.77033 0.82041 0.88617 1.90820 1.42776 1.37937 1.62814 1.46230 1.58147 1.11331 1.16828 1.21826 1.01634 1.01484 0.80245 1.15736 0.78070 0.85029 0.80308 1.90989 1.57721 1.12274 1.80072 1.21936 0.97361 0.98044 0.84538 1.22665 1.00022 1.00417 0.96261 1.20169 0.90491 0.96133 0.85391 0.92443 1.42768 1.78092 1.10201 1.07610 1.19038 1.36549 0.95819 0.85919 0.89179 1.24666 1.01271 0.97429 0.95648 1.69697 1.51969 1.35698 1.00635 0.86589 0.78237 0.86810 0.77058 1.21175 1.20325 1.21787 0.91355 0.93579 0.92517 0.89349 0.91231 0.86087 0.86030 0.85605 0.85608 0.88782 0.90307 0.90307 0.90463 0.90742 0.92190 0.89833 0.80624 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.03 37.16 0.34 -1.66 16 2 C -0.11 -1.60 2.46 -90.50 -0.22 -1.83 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 4 C 0.12 1.55 5.72 -3.71 -0.02 1.53 16 5 N -0.60 -7.03 2.97 -172.77 -0.51 -7.55 16 6 C 0.49 5.94 7.77 -10.99 -0.09 5.86 16 7 O -0.54 -8.43 15.84 5.55 0.09 -8.34 16 8 C 0.13 1.10 4.97 -5.20 -0.03 1.08 16 9 N -0.61 -5.66 2.51 -181.39 -0.45 -6.11 16 10 C 0.06 0.44 7.66 -4.31 -0.03 0.41 16 11 C 0.53 4.83 8.32 -10.55 -0.09 4.74 16 12 O -0.47 -5.38 17.51 5.60 0.10 -5.28 16 13 N -0.58 -5.58 3.01 -128.16 -0.39 -5.96 16 14 C 0.09 0.63 10.76 59.85 0.64 1.27 16 15 C 0.71 8.14 8.31 -88.01 -0.73 7.41 16 16 O -0.54 -7.89 17.34 5.34 0.09 -7.80 16 17 C 0.10 1.06 6.34 -3.71 -0.02 1.03 16 18 C -0.15 -2.10 5.66 -26.61 -0.15 -2.25 16 19 C 0.19 3.11 2.19 -67.89 -0.15 2.96 16 20 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 21 N -0.74 -15.85 4.21 -53.39 -0.22 -16.08 16 22 C -0.24 -6.33 10.41 -15.06 -0.16 -6.49 16 23 H 0.09 2.52 8.06 -52.48 -0.42 2.09 16 24 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 25 N -0.93 -28.11 13.97 55.49 0.78 -27.33 16 26 Si 0.88 21.15 27.74 -169.99 -4.71 16.44 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 28 H -0.28 -6.22 6.52 56.52 0.37 -5.85 16 29 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 30 H 0.07 1.14 7.36 -51.93 -0.38 0.76 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 1.20 7.01 -51.93 -0.36 0.84 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.12 0.59 7.69 -51.93 -0.40 0.19 16 36 H 0.12 0.90 7.83 -51.93 -0.41 0.50 16 37 H 0.13 0.85 8.14 -51.92 -0.42 0.43 16 38 H 0.13 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.09 0.55 7.64 -51.93 -0.40 0.16 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.54 5.93 -51.92 -0.31 0.23 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.36 7.74 5.37 -40.82 -0.22 7.52 16 47 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 LS Contribution 383.75 15.07 5.78 5.78 Total: -1.00 -35.96 383.75 -7.40 -43.35 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -7.14 Total: 4.75 kcal Atomic # 6 Polarization: 14.94 SS G_CDS: -0.80 Total: 14.13 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: -0.80 Total: -63.04 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: 0.28 Total: -21.43 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.71 Total: 16.44 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.96 -7.40 -43.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036263545.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.329 kcal (2) G-P(sol) polarization free energy of solvation -35.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds