Wall clock time and date at job start Tue Mar 31 2020 21:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.52343 * 2 1 4 4 C 1.53189 * 109.48578 * 239.90452 * 2 1 3 5 5 N 1.46929 * 108.76362 * 185.40122 * 4 2 1 6 6 C 1.34774 * 120.63078 * 233.63989 * 5 4 2 7 7 O 1.21287 * 119.99784 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.00086 * 179.97438 * 6 5 4 9 9 N 1.46497 * 109.47274 * 180.02562 * 8 6 5 10 10 C 1.47309 * 126.69153 * 89.99879 * 9 8 6 11 11 C 1.51588 * 103.59742 * 179.97438 * 10 9 8 12 12 O 1.21229 * 127.16194 * 180.02562 * 11 10 9 13 13 N 1.34774 * 105.68175 * 0.02562 * 11 10 9 14 14 C 1.46501 * 124.17779 * 179.97438 * 13 11 10 15 15 C 1.33793 * 111.64448 * 359.76457 * 13 11 10 16 16 O 1.21533 * 123.77531 * 180.24671 * 15 13 11 17 17 C 1.46920 * 118.73689 * 53.62044 * 5 4 2 18 18 C 1.53197 * 108.77526 * 306.38877 * 17 5 4 19 19 C 1.53037 * 109.31323 * 54.63626 * 18 17 5 20 20 H 1.09004 * 109.45606 * 58.64216 * 19 18 17 21 21 N 1.46496 * 109.45869 * 178.61151 * 19 18 17 22 22 C 1.36934 * 120.00548 * 275.02700 * 21 19 18 23 23 H 1.08004 * 119.99288 * 0.02562 * 22 21 19 24 24 C 1.38805 * 120.00389 * 180.02562 * 22 21 19 25 25 N 1.31624 * 120.00257 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 119.99929 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.47174 * 270.00277 * 26 24 22 28 28 H 1.48501 * 109.47062 * 30.00228 * 26 24 22 29 29 H 1.48499 * 109.46981 * 150.00382 * 26 24 22 30 30 H 1.09003 * 109.47168 * 299.92435 * 1 2 3 31 31 H 1.09006 * 109.46825 * 59.92238 * 1 2 3 32 32 H 1.08998 * 109.47235 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.58446 * 65.62127 * 4 2 1 34 34 H 1.08995 * 109.71837 * 305.25979 * 4 2 1 35 35 H 1.09000 * 109.47030 * 299.99751 * 8 6 5 36 36 H 1.09001 * 109.47174 * 59.99962 * 8 6 5 37 37 H 1.09008 * 110.60172 * 298.49061 * 10 9 8 38 38 H 1.09004 * 110.59941 * 61.28368 * 10 9 8 39 39 H 1.08997 * 109.47015 * 0.02907 * 14 13 11 40 40 H 1.08998 * 109.46594 * 120.02525 * 14 13 11 41 41 H 1.08998 * 109.47299 * 240.02492 * 14 13 11 42 42 H 1.09007 * 109.58614 * 186.60400 * 17 5 4 43 43 H 1.08998 * 109.70853 * 66.24609 * 17 5 4 44 44 H 1.09001 * 109.49542 * 294.68536 * 18 17 5 45 45 H 1.08999 * 109.52335 * 174.60517 * 18 17 5 46 46 H 0.96999 * 119.99694 * 95.03224 * 21 19 18 47 47 H 0.97001 * 119.99885 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0411 -0.7242 -1.2495 5 7 3.5044 -0.8292 -1.1696 6 6 4.2808 -0.3857 -2.1780 7 8 3.7726 0.1053 -3.1637 8 6 5.7803 -0.5000 -2.0809 9 7 6.3915 0.0488 -3.2939 10 6 6.8071 1.4445 -3.5161 11 6 7.3650 1.4301 -4.9255 12 8 7.8294 2.3670 -5.5388 13 7 7.2375 0.1590 -5.3548 14 6 7.6547 -0.3082 -6.6792 15 6 6.6870 -0.6246 -4.4205 16 8 6.4750 -1.8115 -4.5733 17 6 4.1052 -1.4265 0.0308 18 6 3.5708 -0.6946 1.2660 19 6 2.0408 -0.7229 1.2485 20 1 1.6969 -1.7572 1.2354 21 7 1.5265 -0.0528 2.4453 22 6 1.3958 -0.7490 3.6172 23 1 1.6723 -1.7922 3.6591 24 6 0.9081 -0.1141 4.7511 25 7 0.7829 -0.7832 5.8776 26 14 0.4307 1.6904 4.6787 27 1 1.6086 2.5282 5.0192 28 1 -0.0351 2.0246 3.3088 29 1 -0.6610 1.9530 5.6505 30 1 -0.3634 0.5127 0.8907 31 1 -0.3633 0.5151 -0.8894 32 1 -0.3633 -1.0276 -0.0005 33 1 1.7633 -0.1585 -2.1389 34 1 1.6053 -1.7219 -1.3002 35 1 6.1317 0.0581 -1.2130 36 1 6.0587 -1.5486 -1.9757 37 1 5.9501 2.1150 -3.4499 38 1 7.5757 1.7345 -2.7996 39 1 8.0749 0.5250 -7.2425 40 1 8.4077 -1.0885 -6.5686 41 1 6.7921 -0.7085 -7.2117 42 1 5.1896 -1.3242 -0.0138 43 1 3.8399 -2.4821 0.0883 44 1 3.9157 0.3393 1.2538 45 1 3.9335 -1.1886 2.1674 46 1 1.2786 0.8842 2.4077 47 1 0.4424 -0.3394 6.6701 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036263545.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:58 Heat of formation + Delta-G solvation = -72.165779 kcal Electronic energy + Delta-G solvation = -30108.182382 eV Core-core repulsion = 25905.861915 eV Total energy + Delta-G solvation = -4202.320467 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.38046 -41.28002 -39.78224 -39.06590 -37.28745 -36.31002 -36.18288 -34.50986 -33.20922 -31.63516 -31.27167 -28.45245 -28.11402 -27.17824 -26.25882 -24.17013 -23.55648 -22.98004 -21.79766 -21.27926 -20.26416 -19.41666 -18.76899 -18.46182 -17.88737 -17.72732 -17.01194 -16.83006 -16.71698 -16.16196 -16.04494 -15.76065 -15.36778 -15.25001 -15.12146 -15.05274 -14.81162 -14.57406 -14.32969 -14.23463 -13.74407 -13.64286 -13.53115 -13.42020 -13.15062 -12.94517 -12.92346 -12.81315 -12.40288 -12.09783 -12.05794 -11.99701 -11.85472 -11.73846 -11.41412 -11.26820 -11.14833 -10.94005 -10.87634 -10.01968 -9.67907 -9.23616 -7.97272 -5.28922 0.52912 0.93780 1.40270 1.41912 1.49425 1.54320 1.73805 1.89483 2.16449 2.51773 3.00278 3.34606 3.42323 3.57098 3.65851 3.82644 4.01269 4.05863 4.15666 4.20827 4.30407 4.33251 4.34165 4.39679 4.41249 4.47673 4.50693 4.64621 4.69196 4.74863 4.77382 4.82939 4.87755 4.98051 5.02970 5.13975 5.23355 5.30164 5.40327 5.51948 5.65003 5.83777 5.97491 6.25677 6.26940 6.38979 6.90570 7.09733 7.13574 7.90900 8.08485 9.24229 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.022870 B = 0.002390 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.013824 B =11714.900009 C =11882.629263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.100 4.100 3 H 0.068 0.932 4 C 0.127 3.873 5 N -0.603 5.603 6 C 0.492 3.508 7 O -0.580 6.580 8 C 0.133 3.867 9 N -0.606 5.606 10 C 0.069 3.931 11 C 0.527 3.473 12 O -0.499 6.499 13 N -0.583 5.583 14 C 0.083 3.917 15 C 0.700 3.300 16 O -0.577 6.577 17 C 0.111 3.889 18 C -0.144 4.144 19 C 0.179 3.821 20 H 0.044 0.956 21 N -0.748 5.748 22 C -0.215 4.215 23 H 0.061 0.939 24 C -0.065 4.065 25 N -0.985 5.985 26 Si 0.947 3.053 27 H -0.280 1.280 28 H -0.254 1.254 29 H -0.303 1.303 30 H 0.044 0.956 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.167 0.833 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.168 0.832 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.121 0.879 43 H 0.080 0.920 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.362 0.638 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.283 3.009 -21.199 26.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.120 4.120 3 H 0.086 0.914 4 C 0.003 3.997 5 N -0.336 5.336 6 C 0.280 3.720 7 O -0.459 6.459 8 C 0.009 3.991 9 N -0.343 5.343 10 C -0.055 4.055 11 C 0.316 3.684 12 O -0.372 6.372 13 N -0.328 5.328 14 C -0.057 4.057 15 C 0.402 3.598 16 O -0.454 6.454 17 C -0.011 4.011 18 C -0.185 4.185 19 C 0.071 3.929 20 H 0.062 0.938 21 N -0.390 5.390 22 C -0.346 4.346 23 H 0.079 0.921 24 C -0.256 4.256 25 N -0.636 5.636 26 Si 0.776 3.224 27 H -0.207 1.207 28 H -0.178 1.178 29 H -0.231 1.231 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.184 0.816 36 H 0.153 0.847 37 H 0.150 0.850 38 H 0.186 0.814 39 H 0.122 0.878 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.139 0.861 43 H 0.098 0.902 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.195 0.805 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 15.136 2.880 -21.968 26.832 hybrid contribution -0.944 0.824 0.580 1.381 sum 14.192 3.705 -21.389 25.935 Atomic orbital electron populations 1.21656 0.94346 1.02094 1.01406 1.21637 0.96428 0.99695 0.94253 0.91383 1.21532 0.79476 1.00983 0.97674 1.48229 1.06769 1.60000 1.18567 1.21707 0.91167 0.77061 0.82090 1.90690 1.76179 1.46627 1.32449 1.21533 0.87282 1.04261 0.86042 1.47140 1.62633 1.10093 1.14420 1.22774 1.04135 0.84134 0.94500 1.21197 0.76402 0.81373 0.89418 1.90811 1.44113 1.38499 1.63728 1.46376 1.57718 1.11527 1.17224 1.21990 1.01904 1.02252 0.79604 1.15973 0.78012 0.84773 0.81041 1.90955 1.59517 1.13967 1.80913 1.21995 0.99638 0.97526 0.81985 1.22454 0.97255 1.01172 0.97582 1.20443 0.92571 0.95263 0.84587 0.93786 1.42786 1.78513 1.10162 1.07555 1.18993 1.33589 0.94708 0.87321 0.92081 1.25401 1.02832 1.01899 0.95493 1.69873 1.54620 1.37642 1.01511 0.85521 0.77531 0.81584 0.77761 1.20659 1.17844 1.23068 0.93716 0.91552 0.92642 0.89975 0.90743 0.81597 0.84746 0.84998 0.81439 0.87755 0.89313 0.90507 0.86088 0.90154 0.91677 0.91469 0.80456 0.93640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 9.03 71.98 0.65 -3.12 16 2 C -0.10 -2.67 2.46 -10.71 -0.03 -2.69 16 3 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 4 C 0.13 2.97 5.72 86.36 0.49 3.46 16 5 N -0.60 -12.18 2.97 -818.90 -2.43 -14.61 16 6 C 0.49 10.25 7.77 87.66 0.68 10.93 16 7 O -0.58 -16.97 15.84 -3.05 -0.05 -17.02 16 8 C 0.13 1.61 4.97 85.63 0.43 2.03 16 9 N -0.61 -9.27 2.51 -846.22 -2.12 -11.39 16 10 C 0.07 0.71 7.66 85.76 0.66 1.37 16 11 C 0.53 8.61 8.32 87.94 0.73 9.34 16 12 O -0.50 -10.62 17.51 -2.87 -0.05 -10.68 16 13 N -0.58 -10.41 3.01 -796.64 -2.39 -12.81 16 14 C 0.08 1.11 10.76 127.77 1.37 2.48 16 15 C 0.70 14.90 8.31 179.44 1.49 16.39 16 16 O -0.58 -16.37 17.34 -3.82 -0.07 -16.43 16 17 C 0.11 1.84 6.34 86.37 0.55 2.38 16 18 C -0.14 -3.60 5.66 30.67 0.17 -3.43 16 19 C 0.18 5.70 2.19 45.02 0.10 5.79 16 20 H 0.04 1.52 8.08 -2.39 -0.02 1.50 16 21 N -0.75 -31.18 4.21 -322.83 -1.36 -32.54 16 22 C -0.21 -11.29 10.41 84.03 0.87 -10.41 16 23 H 0.06 3.52 8.06 -2.91 -0.02 3.49 16 24 C -0.07 -3.66 5.50 84.86 0.47 -3.19 16 25 N -0.99 -61.08 13.97 21.65 0.30 -60.78 16 26 Si 0.95 43.80 27.74 68.60 1.90 45.70 16 27 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 28 H -0.25 -10.57 6.52 99.48 0.65 -9.92 16 29 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 30 H 0.04 1.43 7.36 -2.39 -0.02 1.42 16 31 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.08 2.09 7.01 -2.39 -0.02 2.07 16 34 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.17 0.54 7.69 -2.39 -0.02 0.52 16 36 H 0.13 1.38 7.83 -2.39 -0.02 1.37 16 37 H 0.13 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.17 0.37 8.14 -2.39 -0.02 0.36 16 39 H 0.10 1.15 7.64 -2.39 -0.02 1.13 16 40 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.12 1.01 5.93 -2.38 -0.01 1.00 16 43 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.36 14.93 5.37 -92.71 -0.50 14.44 16 47 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -81.42 383.75 2.81 -78.61 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 0.43 Total: 20.61 kcal Atomic # 6 Polarization: 22.70 SS G_CDS: 8.64 Total: 31.34 kcal Atomic # 7 Polarization: -124.12 SS G_CDS: -8.01 Total: -132.13 kcal Atomic # 8 Polarization: -43.96 SS G_CDS: -0.16 Total: -44.13 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.90 Total: 45.70 kcal Total: -81.42 2.81 -78.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036263545.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.446 kcal (2) G-P(sol) polarization free energy of solvation -81.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds