Wall clock time and date at job start Tue Mar 31 2020 21:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.52826 * 2 1 4 4 C 1.53193 * 109.50170 * 120.08264 * 2 1 3 5 5 N 1.46924 * 108.77802 * 174.58583 * 4 2 1 6 6 C 1.34781 * 120.62731 * 126.37010 * 5 4 2 7 7 O 1.21275 * 120.00303 * 359.97438 * 6 5 4 8 8 C 1.50705 * 119.99775 * 180.02562 * 6 5 4 9 9 N 1.46494 * 109.47009 * 179.97438 * 8 6 5 10 10 C 1.47316 * 126.68981 * 89.99904 * 9 8 6 11 11 C 1.51586 * 103.59205 * 179.97438 * 10 9 8 12 12 O 1.21236 * 127.15257 * 179.97438 * 11 10 9 13 13 N 1.34761 * 105.68559 * 0.02562 * 11 10 9 14 14 C 1.46504 * 124.17836 * 180.02562 * 13 11 10 15 15 C 1.33794 * 111.64629 * 359.97438 * 13 11 10 16 16 O 1.21539 * 123.77234 * 180.02562 * 15 13 11 17 17 C 1.46917 * 118.74013 * 306.63992 * 5 4 2 18 18 C 1.52764 * 109.00585 * 53.31279 * 17 5 4 19 19 C 1.53044 * 109.49742 * 239.91913 * 2 1 3 20 20 H 1.08996 * 109.46044 * 298.70050 * 19 2 1 21 21 N 1.46494 * 109.45794 * 58.66408 * 19 2 1 22 22 C 1.36943 * 120.00049 * 204.99994 * 21 19 2 23 23 H 1.07995 * 119.99437 * 0.02562 * 22 21 19 24 24 C 1.38803 * 120.00334 * 180.02562 * 22 21 19 25 25 N 1.31626 * 120.00095 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00211 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47105 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.47213 * 119.99823 * 26 24 22 29 29 H 1.48501 * 109.47201 * 239.99956 * 26 24 22 30 30 H 1.08997 * 109.47017 * 299.91610 * 1 2 3 31 31 H 1.08994 * 109.46979 * 59.91711 * 1 2 3 32 32 H 1.09006 * 109.46694 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.58321 * 54.79247 * 4 2 1 34 34 H 1.09005 * 109.58492 * 294.37230 * 4 2 1 35 35 H 1.09001 * 109.47006 * 59.99431 * 8 6 5 36 36 H 1.08999 * 109.46748 * 300.00061 * 8 6 5 37 37 H 1.08999 * 110.59463 * 61.45495 * 10 9 8 38 38 H 1.08997 * 110.59831 * 298.50523 * 10 9 8 39 39 H 1.09001 * 109.46532 * 359.97275 * 14 13 11 40 40 H 1.08995 * 109.47389 * 119.97620 * 14 13 11 41 41 H 1.08998 * 109.46863 * 239.97711 * 14 13 11 42 42 H 1.09001 * 109.59195 * 173.14068 * 17 5 4 43 43 H 1.09000 * 109.58807 * 293.57246 * 17 5 4 44 44 H 1.09004 * 109.56230 * 185.55395 * 18 17 5 45 45 H 1.08994 * 109.39096 * 65.51629 * 18 17 5 46 46 H 0.96998 * 120.00465 * 24.99799 * 21 19 2 47 47 H 0.96994 * 120.00311 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0274 0.0000 4 6 2.0414 -0.7238 1.2495 5 7 3.5047 -0.8291 1.1695 6 6 4.2812 -0.3856 2.1779 7 8 3.7733 0.1065 3.1631 8 6 5.7807 -0.5001 2.0806 9 7 6.3921 0.0487 3.2935 10 6 6.7108 -0.6874 4.5290 11 6 7.3178 0.3714 5.4281 12 8 7.7321 0.2230 6.5577 13 7 7.2999 1.5122 4.7109 14 6 7.7980 2.8001 5.2005 15 6 6.7720 1.3232 3.4961 16 8 6.6496 2.2044 2.6681 17 6 4.1055 -1.4216 -0.0332 18 6 3.5709 -0.6950 -1.2660 19 6 2.0408 -0.7231 -1.2484 20 1 1.6968 -1.7573 -1.2353 21 7 1.5265 -0.0529 -2.4452 22 6 1.3964 -0.7492 -3.6173 23 1 1.6725 -1.7924 -3.6590 24 6 0.9096 -0.1141 -4.7515 25 7 0.5726 1.1572 -4.7004 26 14 0.7314 -1.0641 -6.3500 27 1 1.1746 -2.4664 -6.1445 28 1 -0.6907 -1.0515 -6.7774 29 1 1.5692 -0.4294 -7.3990 30 1 -0.3633 0.5125 0.8907 31 1 -0.3633 0.5151 -0.8892 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6052 -1.7216 1.2980 34 1 1.7639 -0.1579 2.1389 35 1 6.1322 0.0577 1.2125 36 1 6.0589 -1.5488 1.9756 37 1 7.4324 -1.4794 4.3282 38 1 5.8050 -1.0968 4.9760 39 1 8.1748 2.6813 6.2164 40 1 8.6025 3.1484 4.5529 41 1 6.9871 3.5284 5.1965 42 1 5.1896 -1.3159 0.0099 43 1 3.8412 -2.4774 -0.0915 44 1 3.9334 -1.1897 -2.1671 45 1 3.9159 0.3389 -1.2547 46 1 1.2781 0.8839 -2.4076 47 1 0.2321 1.6009 -5.4929 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036263556.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:07 Heat of formation + Delta-G solvation = -75.691857 kcal Electronic energy + Delta-G solvation = -30094.841075 eV Core-core repulsion = 25892.367706 eV Total energy + Delta-G solvation = -4202.473369 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.37878 -41.26020 -39.77235 -39.01443 -37.29432 -36.25270 -36.13743 -34.49117 -33.05305 -31.52130 -30.93718 -28.43741 -28.11565 -27.08904 -26.30534 -24.39577 -23.55411 -23.04661 -21.81291 -21.08555 -20.17257 -19.03768 -18.76643 -18.45272 -17.88667 -17.74568 -16.95708 -16.83958 -16.74598 -16.16485 -15.80641 -15.68014 -15.44679 -15.34496 -15.11720 -15.04553 -14.88886 -14.54811 -14.21219 -14.05557 -13.72276 -13.56973 -13.53787 -13.16406 -13.12419 -12.88817 -12.87394 -12.74300 -12.45418 -12.10462 -12.06448 -12.01073 -11.83259 -11.64637 -11.40933 -11.25809 -11.12590 -10.94701 -10.84893 -10.01154 -9.65097 -8.94373 -7.89378 -5.16972 0.53724 0.93605 1.49930 1.50083 1.53076 1.59786 1.76957 1.90437 2.18767 2.59602 3.00789 3.42656 3.45970 3.65812 3.82203 3.86890 4.04941 4.12795 4.15478 4.23223 4.32802 4.34504 4.35556 4.38145 4.44035 4.47417 4.52775 4.68081 4.69122 4.76835 4.81078 4.86079 4.87464 5.01150 5.03774 5.15695 5.24573 5.35361 5.41816 5.54175 5.59211 5.67571 5.98104 6.26846 6.32044 6.40960 6.90708 7.10918 7.38192 8.15279 8.37442 9.34693 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023263 B = 0.002328 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.328382 B =12026.547366 C =12257.877682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.102 4.102 3 H 0.043 0.957 4 C 0.129 3.871 5 N -0.603 5.603 6 C 0.490 3.510 7 O -0.581 6.581 8 C 0.134 3.866 9 N -0.606 5.606 10 C 0.072 3.928 11 C 0.526 3.474 12 O -0.499 6.499 13 N -0.584 5.584 14 C 0.083 3.917 15 C 0.697 3.303 16 O -0.582 6.582 17 C 0.113 3.887 18 C -0.148 4.148 19 C 0.179 3.821 20 H 0.054 0.946 21 N -0.734 5.734 22 C -0.224 4.224 23 H 0.082 0.918 24 C -0.082 4.082 25 N -0.974 5.974 26 Si 0.968 3.032 27 H -0.260 1.260 28 H -0.300 1.300 29 H -0.299 1.299 30 H 0.059 0.941 31 H 0.037 0.963 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.125 0.875 36 H 0.177 0.823 37 H 0.173 0.827 38 H 0.136 0.864 39 H 0.106 0.894 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.116 0.884 43 H 0.099 0.901 44 H 0.072 0.928 45 H 0.039 0.961 46 H 0.368 0.632 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.669 -9.130 19.767 26.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.122 4.122 3 H 0.062 0.938 4 C 0.006 3.994 5 N -0.336 5.336 6 C 0.278 3.722 7 O -0.461 6.461 8 C 0.010 3.990 9 N -0.343 5.343 10 C -0.052 4.052 11 C 0.315 3.685 12 O -0.371 6.371 13 N -0.329 5.329 14 C -0.058 4.058 15 C 0.399 3.601 16 O -0.458 6.458 17 C -0.009 4.009 18 C -0.189 4.189 19 C 0.070 3.930 20 H 0.072 0.928 21 N -0.373 5.373 22 C -0.356 4.356 23 H 0.100 0.900 24 C -0.273 4.273 25 N -0.626 5.626 26 Si 0.798 3.202 27 H -0.184 1.184 28 H -0.228 1.228 29 H -0.227 1.227 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.142 0.858 36 H 0.195 0.805 37 H 0.190 0.810 38 H 0.154 0.846 39 H 0.125 0.875 40 H 0.105 0.895 41 H 0.092 0.908 42 H 0.134 0.866 43 H 0.117 0.883 44 H 0.090 0.910 45 H 0.058 0.942 46 H 0.199 0.801 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 15.555 -8.648 20.261 26.968 hybrid contribution -0.806 0.967 -1.340 1.839 sum 14.749 -7.680 18.921 25.189 Atomic orbital electron populations 1.21572 0.94228 1.02102 1.00898 1.21625 0.96532 0.98858 0.95212 0.93811 1.21538 0.79502 1.01294 0.97084 1.48255 1.06771 1.60183 1.18377 1.21748 0.91210 0.76914 0.82341 1.90683 1.76220 1.46028 1.33185 1.21538 0.87089 1.04750 0.85634 1.47155 1.62488 1.07977 1.16660 1.22807 1.04759 0.95207 0.82451 1.21266 0.76555 0.84444 0.86205 1.90810 1.46417 1.82975 1.16943 1.46378 1.57658 1.13585 1.15264 1.21979 1.00758 0.81218 1.01826 1.16049 0.78108 0.84072 0.81898 1.90980 1.61184 1.46088 1.47540 1.21945 0.99349 0.98056 0.81584 1.22439 0.98090 1.00102 0.98269 1.20459 0.92064 0.95377 0.85063 0.92832 1.42656 1.76898 1.10838 1.06905 1.19657 1.33186 0.94471 0.88285 0.89999 1.25518 1.03457 0.96905 1.01438 1.69838 1.52332 1.11274 1.29123 0.85142 0.76428 0.78504 0.80133 1.18449 1.22785 1.22712 0.92176 0.94348 0.91921 0.89250 0.90566 0.85768 0.80547 0.81016 0.84617 0.87508 0.89466 0.90783 0.86554 0.88308 0.90976 0.94240 0.80083 0.94420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.16 9.02 71.98 0.65 -3.51 16 2 C -0.10 -3.23 2.46 -10.71 -0.03 -3.26 16 3 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 4 C 0.13 3.25 5.72 86.36 0.49 3.75 16 5 N -0.60 -13.04 2.98 -819.74 -2.44 -15.48 16 6 C 0.49 10.95 7.77 87.66 0.68 11.63 16 7 O -0.58 -18.03 15.84 -3.01 -0.05 -18.07 16 8 C 0.13 1.77 4.97 85.64 0.43 2.19 16 9 N -0.61 -9.86 2.51 -846.23 -2.12 -11.98 16 10 C 0.07 0.69 7.66 85.76 0.66 1.35 16 11 C 0.53 8.73 8.32 87.94 0.73 9.46 16 12 O -0.50 -10.59 17.51 -2.89 -0.05 -10.64 16 13 N -0.58 -11.29 3.00 -796.65 -2.39 -13.68 16 14 C 0.08 1.26 10.76 127.77 1.37 2.64 16 15 C 0.70 16.41 8.31 179.44 1.49 17.90 16 16 O -0.58 -18.75 17.34 -3.84 -0.07 -18.81 16 17 C 0.11 1.93 6.31 86.22 0.54 2.47 16 18 C -0.15 -4.25 5.64 30.53 0.17 -4.08 16 19 C 0.18 6.23 2.20 45.02 0.10 6.33 16 20 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 21 N -0.73 -34.80 4.41 -322.82 -1.42 -36.22 16 22 C -0.22 -11.66 9.93 84.03 0.83 -10.83 16 23 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 24 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 25 N -0.97 -59.23 13.06 21.65 0.28 -58.95 16 26 Si 0.97 44.93 29.55 68.60 2.03 46.96 16 27 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 28 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 29 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 30 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.04 1.49 7.36 -2.39 -0.02 1.48 16 32 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.08 2.14 7.00 -2.38 -0.02 2.13 16 35 H 0.12 1.72 7.57 -2.39 -0.02 1.70 16 36 H 0.18 0.31 7.95 -2.39 -0.02 0.29 16 37 H 0.17 0.12 8.14 -2.39 -0.02 0.10 16 38 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.11 1.31 7.64 -2.39 -0.02 1.29 16 40 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.12 1.12 5.94 -2.39 -0.01 1.10 16 43 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.07 2.17 8.14 -2.38 -0.02 2.16 16 45 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.37 19.64 7.50 -92.71 -0.70 18.94 16 47 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -82.96 386.84 2.66 -80.30 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 0.29 Total: 24.61 kcal Atomic # 6 Polarization: 23.38 SS G_CDS: 8.60 Total: 31.98 kcal Atomic # 7 Polarization: -128.22 SS G_CDS: -8.10 Total: -136.32 kcal Atomic # 8 Polarization: -47.36 SS G_CDS: -0.16 Total: -47.53 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -82.96 2.66 -80.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036263556.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.611 kcal (2) G-P(sol) polarization free energy of solvation -82.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds