Wall clock time and date at job start Tue Mar 31 2020 21:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.53120 * 2 1 4 4 C 1.53197 * 109.49483 * 120.08480 * 2 1 3 5 5 N 1.46927 * 108.77749 * 174.58487 * 4 2 1 6 6 C 1.34768 * 120.63448 * 126.36578 * 5 4 2 7 7 O 1.21278 * 120.00058 * 0.02562 * 6 5 4 8 8 C 1.50705 * 120.00401 * 180.02562 * 6 5 4 9 9 N 1.46494 * 109.47149 * 180.02562 * 8 6 5 10 10 C 1.47314 * 126.68920 * 269.70789 * 9 8 6 11 11 C 1.51583 * 103.59356 * 179.97438 * 10 9 8 12 12 O 1.21231 * 127.16123 * 180.15378 * 11 10 9 13 13 N 1.34771 * 105.68269 * 0.33186 * 11 10 9 14 14 C 1.46498 * 124.17477 * 179.74557 * 13 11 10 15 15 C 1.33790 * 111.64513 * 359.78344 * 13 11 10 16 16 O 1.21534 * 123.76971 * 179.97438 * 15 13 11 17 17 C 1.46929 * 118.73416 * 306.39107 * 5 4 2 18 18 C 1.53191 * 108.78221 * 53.60774 * 17 5 4 19 19 C 1.53040 * 109.49606 * 239.91759 * 2 1 3 20 20 H 1.09000 * 109.45235 * 58.67442 * 19 2 1 21 21 N 1.46504 * 109.46016 * 298.70585 * 19 2 1 22 22 C 1.36943 * 119.99781 * 154.93282 * 21 19 2 23 23 H 1.08002 * 119.99788 * 359.97438 * 22 21 19 24 24 C 1.38811 * 119.99622 * 180.27904 * 22 21 19 25 25 N 1.31622 * 119.99400 * 179.72313 * 24 22 21 26 26 Si 1.86800 * 120.00144 * 359.72086 * 24 22 21 27 27 H 1.48506 * 109.46719 * 90.00417 * 26 24 22 28 28 H 1.48501 * 109.46793 * 210.00071 * 26 24 22 29 29 H 1.48489 * 109.47333 * 330.00315 * 26 24 22 30 30 H 1.08994 * 109.47936 * 180.08205 * 1 2 3 31 31 H 1.09004 * 109.47143 * 300.08430 * 1 2 3 32 32 H 1.09003 * 109.47110 * 60.07522 * 1 2 3 33 33 H 1.08995 * 109.59115 * 54.79485 * 4 2 1 34 34 H 1.09002 * 109.70336 * 294.44065 * 4 2 1 35 35 H 1.09001 * 109.46535 * 300.00467 * 8 6 5 36 36 H 1.09001 * 109.46556 * 59.99822 * 8 6 5 37 37 H 1.09004 * 110.59948 * 298.56800 * 10 9 8 38 38 H 1.08998 * 110.59960 * 61.51269 * 10 9 8 39 39 H 1.09007 * 109.47482 * 270.04239 * 14 13 11 40 40 H 1.08996 * 109.47469 * 30.04060 * 14 13 11 41 41 H 1.08999 * 109.46815 * 150.04516 * 14 13 11 42 42 H 1.08999 * 109.58493 * 293.81342 * 17 5 4 43 43 H 1.09002 * 109.70301 * 173.46543 * 17 5 4 44 44 H 1.08994 * 109.50181 * 185.41706 * 18 17 5 45 45 H 1.09004 * 109.52406 * 65.32482 * 18 17 5 46 46 H 0.97000 * 120.00410 * 334.93608 * 21 19 2 47 47 H 0.97009 * 119.99492 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0412 -0.7239 1.2496 5 7 3.5045 -0.8293 1.1697 6 6 4.2811 -0.3859 2.1779 7 8 3.7732 0.1054 3.1636 8 6 5.7806 -0.5005 2.0807 9 7 6.3919 0.0472 3.2941 10 6 6.8133 1.4414 3.5151 11 6 7.3673 1.4268 4.9260 12 8 7.8315 2.3632 5.5402 13 7 7.2400 0.1552 5.3542 14 6 7.6593 -0.3134 6.6774 15 6 6.6841 -0.6263 4.4214 16 8 6.4677 -1.8123 4.5751 17 6 4.1051 -1.4269 -0.0307 18 6 3.5708 -0.6952 -1.2660 19 6 2.0407 -0.7231 -1.2483 20 1 1.6582 -0.2243 -2.1388 21 7 1.5782 -2.1131 -1.2308 22 6 1.4467 -2.8058 -2.4047 23 1 1.6835 -2.3273 -3.3435 24 6 1.0029 -4.1210 -2.3885 25 7 0.8713 -4.7850 -3.5173 26 14 0.5925 -4.9483 -0.7648 27 1 -0.8394 -4.7225 -0.4422 28 1 0.8515 -6.4066 -0.8730 29 1 1.4390 -4.3737 0.3114 30 1 -0.3635 -1.0276 0.0015 31 1 -0.3633 0.5152 0.8893 32 1 -0.3633 0.5127 -0.8907 33 1 1.6051 -1.7217 1.2980 34 1 1.7636 -0.1602 2.1403 35 1 6.0587 -1.5492 1.9757 36 1 6.1320 0.0573 1.2127 37 1 7.5865 1.7260 2.8014 38 1 5.9596 2.1156 3.4463 39 1 8.6958 -0.6479 6.6328 40 1 7.5711 0.5012 7.3962 41 1 7.0231 -1.1423 6.9876 42 1 3.8374 -2.4820 -0.0867 43 1 5.1897 -1.3270 0.0124 44 1 3.9333 -1.1899 -2.1671 45 1 3.9159 0.3387 -1.2546 46 1 1.3650 -2.5428 -0.3876 47 1 0.5615 -5.7042 -3.5060 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036263562.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:12 Heat of formation + Delta-G solvation = -43.983222 kcal Electronic energy + Delta-G solvation = -30612.933786 eV Core-core repulsion = 26411.835407 eV Total energy + Delta-G solvation = -4201.098379 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.60760 -40.27296 -38.92183 -37.97920 -36.39454 -35.45791 -34.53875 -33.02785 -31.61005 -30.71321 -29.82833 -27.58630 -27.43151 -26.02871 -24.93555 -23.24359 -22.82296 -21.78320 -20.94522 -19.80249 -18.45276 -18.07045 -17.80689 -17.60625 -17.02141 -16.86240 -16.05469 -15.95055 -15.28511 -14.97581 -14.81369 -14.56327 -14.50225 -14.30943 -14.28979 -13.79039 -13.72363 -13.53269 -13.22857 -13.03496 -12.94114 -12.65880 -12.44610 -12.33066 -11.79419 -11.66611 -11.52162 -11.22636 -11.04808 -11.03377 -10.71517 -10.63613 -10.56838 -10.27729 -10.24172 -10.13555 -9.93641 -9.61697 -9.19603 -9.01755 -8.48924 -7.35080 -5.84498 -3.20318 1.29133 1.66143 2.48417 2.53715 2.68690 3.11263 3.30731 3.33911 3.41188 3.67839 4.27734 4.33905 4.51661 4.63074 4.74145 4.85687 4.91142 4.95505 4.96329 5.05251 5.12858 5.16788 5.25288 5.27212 5.38693 5.45314 5.52221 5.54910 5.66832 5.78683 5.84271 5.93473 6.00525 6.13362 6.19253 6.30218 6.38060 6.45566 6.57720 6.67394 6.75361 6.78240 6.99003 7.42425 7.75681 7.91278 8.09688 8.34564 9.12418 9.85136 10.04355 11.33746 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019034 B = 0.002852 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.693459 B = 9814.038628 C =10334.327422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.111 4.111 3 H 0.071 0.929 4 C 0.118 3.882 5 N -0.600 5.600 6 C 0.493 3.507 7 O -0.542 6.542 8 C 0.134 3.866 9 N -0.609 5.609 10 C 0.065 3.935 11 C 0.527 3.473 12 O -0.474 6.474 13 N -0.579 5.579 14 C 0.089 3.911 15 C 0.705 3.295 16 O -0.536 6.536 17 C 0.109 3.891 18 C -0.150 4.150 19 C 0.184 3.816 20 H 0.061 0.939 21 N -0.744 5.744 22 C -0.243 4.243 23 H 0.091 0.909 24 C 0.008 3.992 25 N -0.932 5.932 26 Si 0.878 3.122 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.278 1.278 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.053 0.947 46 H 0.360 0.640 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.278 13.369 12.920 22.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.131 4.131 3 H 0.090 0.910 4 C -0.004 4.004 5 N -0.333 5.333 6 C 0.279 3.721 7 O -0.420 6.420 8 C 0.009 3.991 9 N -0.347 5.347 10 C -0.061 4.061 11 C 0.314 3.686 12 O -0.344 6.344 13 N -0.325 5.325 14 C -0.052 4.052 15 C 0.407 3.593 16 O -0.409 6.409 17 C -0.014 4.014 18 C -0.191 4.191 19 C 0.074 3.926 20 H 0.079 0.921 21 N -0.388 5.388 22 C -0.372 4.372 23 H 0.109 0.891 24 C -0.188 4.188 25 N -0.580 5.580 26 Si 0.708 3.292 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.205 1.205 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.102 0.898 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.072 0.928 46 H 0.194 0.806 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.101 13.314 13.582 23.095 hybrid contribution -0.393 -0.862 0.969 1.356 sum 12.707 12.452 14.552 22.984 Atomic orbital electron populations 1.21677 0.94156 1.02837 1.00986 1.21752 0.96580 0.99227 0.95493 0.91025 1.21659 0.78562 1.01195 0.99004 1.48155 1.07197 1.59747 1.18185 1.20977 0.89587 0.78459 0.83044 1.90685 1.75149 1.45218 1.30908 1.21243 0.90349 1.02548 0.84933 1.46987 1.63504 1.09416 1.14760 1.22535 1.02816 0.85527 0.95200 1.20840 0.77062 0.82010 0.88661 1.90816 1.42760 1.38042 1.62793 1.46232 1.57943 1.11358 1.16981 1.21833 1.01320 1.01808 0.80268 1.15756 0.78060 0.85050 0.80395 1.91002 1.57648 1.12324 1.79921 1.21823 0.96446 0.99191 0.83895 1.22511 1.00141 0.98933 0.97484 1.20186 0.90917 0.86223 0.95248 0.92092 1.42854 1.80695 1.09344 1.05859 1.19037 1.37674 0.94287 0.86232 0.89142 1.24641 1.01395 0.96781 0.96002 1.69693 1.52791 1.11065 1.24417 0.86675 0.78512 0.79369 0.84605 1.21055 1.21715 1.20468 0.91685 0.93526 0.92231 0.91439 0.89502 0.86060 0.86150 0.85678 0.85657 0.90863 0.89389 0.89143 0.89783 0.90915 0.90006 0.92810 0.80578 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.05 37.16 0.34 -1.62 16 2 C -0.11 -1.56 2.67 -90.50 -0.24 -1.80 16 3 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 4 C 0.12 1.76 5.42 -3.71 -0.02 1.74 16 5 N -0.60 -8.17 2.97 -172.76 -0.51 -8.68 16 6 C 0.49 6.60 7.77 -10.99 -0.09 6.52 16 7 O -0.54 -9.07 15.84 5.56 0.09 -8.99 16 8 C 0.13 1.26 4.97 -5.19 -0.03 1.23 16 9 N -0.61 -6.14 2.51 -181.40 -0.45 -6.60 16 10 C 0.07 0.47 7.66 -4.31 -0.03 0.44 16 11 C 0.53 5.05 8.32 -10.55 -0.09 4.97 16 12 O -0.47 -5.54 17.76 5.60 0.10 -5.44 16 13 N -0.58 -5.98 3.00 -128.17 -0.39 -6.37 16 14 C 0.09 0.69 10.73 59.85 0.64 1.33 16 15 C 0.71 8.81 8.31 -88.02 -0.73 8.08 16 16 O -0.54 -8.57 17.15 5.34 0.09 -8.48 16 17 C 0.11 1.39 6.08 -3.71 -0.02 1.37 16 18 C -0.15 -2.05 5.78 -26.61 -0.15 -2.20 16 19 C 0.18 3.01 2.53 -67.88 -0.17 2.84 16 20 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 21 N -0.74 -15.37 3.44 -53.38 -0.18 -15.55 16 22 C -0.24 -6.19 10.41 -15.06 -0.16 -6.35 16 23 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 24 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 25 N -0.93 -27.97 13.97 55.49 0.78 -27.19 16 26 Si 0.88 21.21 27.73 -169.99 -4.71 16.49 16 27 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 28 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 29 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 30 H 0.06 1.05 7.54 -51.93 -0.39 0.66 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 1.12 6.64 -51.93 -0.34 0.77 16 34 H 0.09 1.32 7.00 -51.93 -0.36 0.95 16 35 H 0.12 1.12 7.83 -51.93 -0.41 0.72 16 36 H 0.12 0.66 7.70 -51.93 -0.40 0.26 16 37 H 0.13 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.13 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.59 8.00 -51.93 -0.42 0.17 16 41 H 0.09 0.73 7.86 -51.93 -0.41 0.32 16 42 H 0.08 1.32 7.74 -51.93 -0.40 0.92 16 43 H 0.07 0.66 5.95 -51.93 -0.31 0.35 16 44 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 45 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.36 7.58 3.79 -40.82 -0.15 7.43 16 47 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 379.94 15.07 5.73 5.73 Total: -1.00 -35.44 379.94 -7.31 -42.75 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -6.99 Total: 5.68 kcal Atomic # 6 Polarization: 17.50 SS G_CDS: -0.85 Total: 16.66 kcal Atomic # 7 Polarization: -63.63 SS G_CDS: -0.76 Total: -64.39 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: 0.28 Total: -22.91 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.71 Total: 16.49 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.44 -7.31 -42.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036263562.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.236 kcal (2) G-P(sol) polarization free energy of solvation -35.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds