Wall clock time and date at job start Tue Mar 31 2020 21:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.53120 * 2 1 4 4 C 1.53197 * 109.49483 * 120.08480 * 2 1 3 5 5 N 1.46927 * 108.77749 * 174.58487 * 4 2 1 6 6 C 1.34768 * 120.63448 * 126.36578 * 5 4 2 7 7 O 1.21278 * 120.00058 * 0.02562 * 6 5 4 8 8 C 1.50705 * 120.00401 * 180.02562 * 6 5 4 9 9 N 1.46494 * 109.47149 * 180.02562 * 8 6 5 10 10 C 1.47314 * 126.68920 * 269.70789 * 9 8 6 11 11 C 1.51583 * 103.59356 * 179.97438 * 10 9 8 12 12 O 1.21231 * 127.16123 * 180.15378 * 11 10 9 13 13 N 1.34771 * 105.68269 * 0.33186 * 11 10 9 14 14 C 1.46498 * 124.17477 * 179.74557 * 13 11 10 15 15 C 1.33790 * 111.64513 * 359.78344 * 13 11 10 16 16 O 1.21534 * 123.76971 * 179.97438 * 15 13 11 17 17 C 1.46929 * 118.73416 * 306.39107 * 5 4 2 18 18 C 1.53191 * 108.78221 * 53.60774 * 17 5 4 19 19 C 1.53040 * 109.49606 * 239.91759 * 2 1 3 20 20 H 1.09000 * 109.45235 * 58.67442 * 19 2 1 21 21 N 1.46504 * 109.46016 * 298.70585 * 19 2 1 22 22 C 1.36943 * 119.99781 * 154.93282 * 21 19 2 23 23 H 1.08002 * 119.99788 * 359.97438 * 22 21 19 24 24 C 1.38811 * 119.99622 * 180.27904 * 22 21 19 25 25 N 1.31622 * 119.99400 * 179.72313 * 24 22 21 26 26 Si 1.86800 * 120.00144 * 359.72086 * 24 22 21 27 27 H 1.48506 * 109.46719 * 90.00417 * 26 24 22 28 28 H 1.48501 * 109.46793 * 210.00071 * 26 24 22 29 29 H 1.48489 * 109.47333 * 330.00315 * 26 24 22 30 30 H 1.08994 * 109.47936 * 180.08205 * 1 2 3 31 31 H 1.09004 * 109.47143 * 300.08430 * 1 2 3 32 32 H 1.09003 * 109.47110 * 60.07522 * 1 2 3 33 33 H 1.08995 * 109.59115 * 54.79485 * 4 2 1 34 34 H 1.09002 * 109.70336 * 294.44065 * 4 2 1 35 35 H 1.09001 * 109.46535 * 300.00467 * 8 6 5 36 36 H 1.09001 * 109.46556 * 59.99822 * 8 6 5 37 37 H 1.09004 * 110.59948 * 298.56800 * 10 9 8 38 38 H 1.08998 * 110.59960 * 61.51269 * 10 9 8 39 39 H 1.09007 * 109.47482 * 270.04239 * 14 13 11 40 40 H 1.08996 * 109.47469 * 30.04060 * 14 13 11 41 41 H 1.08999 * 109.46815 * 150.04516 * 14 13 11 42 42 H 1.08999 * 109.58493 * 293.81342 * 17 5 4 43 43 H 1.09002 * 109.70301 * 173.46543 * 17 5 4 44 44 H 1.08994 * 109.50181 * 185.41706 * 18 17 5 45 45 H 1.09004 * 109.52406 * 65.32482 * 18 17 5 46 46 H 0.97000 * 120.00410 * 334.93608 * 21 19 2 47 47 H 0.97009 * 119.99492 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0412 -0.7239 1.2496 5 7 3.5045 -0.8293 1.1697 6 6 4.2811 -0.3859 2.1779 7 8 3.7732 0.1054 3.1636 8 6 5.7806 -0.5005 2.0807 9 7 6.3919 0.0472 3.2941 10 6 6.8133 1.4414 3.5151 11 6 7.3673 1.4268 4.9260 12 8 7.8315 2.3632 5.5402 13 7 7.2400 0.1552 5.3542 14 6 7.6593 -0.3134 6.6774 15 6 6.6841 -0.6263 4.4214 16 8 6.4677 -1.8123 4.5751 17 6 4.1051 -1.4269 -0.0307 18 6 3.5708 -0.6952 -1.2660 19 6 2.0407 -0.7231 -1.2483 20 1 1.6582 -0.2243 -2.1388 21 7 1.5782 -2.1131 -1.2308 22 6 1.4467 -2.8058 -2.4047 23 1 1.6835 -2.3273 -3.3435 24 6 1.0029 -4.1210 -2.3885 25 7 0.8713 -4.7850 -3.5173 26 14 0.5925 -4.9483 -0.7648 27 1 -0.8394 -4.7225 -0.4422 28 1 0.8515 -6.4066 -0.8730 29 1 1.4390 -4.3737 0.3114 30 1 -0.3635 -1.0276 0.0015 31 1 -0.3633 0.5152 0.8893 32 1 -0.3633 0.5127 -0.8907 33 1 1.6051 -1.7217 1.2980 34 1 1.7636 -0.1602 2.1403 35 1 6.0587 -1.5492 1.9757 36 1 6.1320 0.0573 1.2127 37 1 7.5865 1.7260 2.8014 38 1 5.9596 2.1156 3.4463 39 1 8.6958 -0.6479 6.6328 40 1 7.5711 0.5012 7.3962 41 1 7.0231 -1.1423 6.9876 42 1 3.8374 -2.4820 -0.0867 43 1 5.1897 -1.3270 0.0124 44 1 3.9333 -1.1899 -2.1671 45 1 3.9159 0.3387 -1.2546 46 1 1.3650 -2.5428 -0.3876 47 1 0.5615 -5.7042 -3.5060 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036263562.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:11 Heat of formation + Delta-G solvation = -68.880863 kcal Electronic energy + Delta-G solvation = -30614.013429 eV Core-core repulsion = 26411.835407 eV Total energy + Delta-G solvation = -4202.178022 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.38943 -41.35856 -39.80226 -39.16749 -37.30387 -36.23884 -35.95083 -34.53347 -33.13925 -31.52332 -31.35549 -28.45176 -28.12891 -27.18412 -26.10460 -24.94175 -23.60303 -23.00115 -21.79972 -20.83926 -19.86948 -19.60013 -18.76995 -18.45787 -17.88058 -17.74527 -17.02795 -16.86273 -16.60554 -16.28947 -15.93049 -15.71302 -15.50601 -15.30202 -15.12557 -15.01244 -14.98198 -14.57367 -14.44537 -14.23379 -13.71576 -13.65341 -13.56426 -13.30598 -13.17811 -13.02712 -12.90550 -12.67456 -12.45865 -12.11255 -12.03122 -11.96559 -11.90833 -11.65582 -11.41643 -11.26917 -11.15911 -10.94957 -10.89594 -10.02709 -9.65106 -9.21039 -7.97501 -5.27196 0.52901 0.92503 1.36578 1.37618 1.44459 1.52538 1.73603 1.89217 2.16087 2.49329 3.00195 3.35326 3.41868 3.63065 3.66495 3.84558 4.00830 4.03417 4.13697 4.21286 4.29989 4.31679 4.35124 4.37514 4.38587 4.46329 4.49509 4.66316 4.67905 4.71149 4.77857 4.82147 4.97670 5.03121 5.13902 5.15200 5.24865 5.30260 5.34506 5.45701 5.64500 5.86889 5.96895 6.26053 6.27352 6.40571 6.89301 7.08224 7.14437 7.92456 8.08892 9.24486 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019034 B = 0.002852 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.693459 B = 9814.038628 C =10334.327422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.097 4.097 3 H 0.097 0.903 4 C 0.119 3.881 5 N -0.600 5.600 6 C 0.491 3.509 7 O -0.579 6.579 8 C 0.135 3.865 9 N -0.606 5.606 10 C 0.071 3.929 11 C 0.526 3.474 12 O -0.498 6.498 13 N -0.583 5.583 14 C 0.082 3.918 15 C 0.697 3.303 16 O -0.581 6.581 17 C 0.111 3.889 18 C -0.141 4.141 19 C 0.173 3.827 20 H 0.051 0.949 21 N -0.744 5.744 22 C -0.206 4.206 23 H 0.065 0.935 24 C -0.059 4.059 25 N -0.984 5.984 26 Si 0.936 3.064 27 H -0.286 1.286 28 H -0.302 1.302 29 H -0.259 1.259 30 H 0.038 0.962 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.044 0.956 34 H 0.084 0.916 35 H 0.125 0.875 36 H 0.174 0.826 37 H 0.171 0.829 38 H 0.136 0.864 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.052 0.948 43 H 0.120 0.880 44 H 0.067 0.933 45 H 0.090 0.910 46 H 0.360 0.640 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.191 15.837 13.656 25.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.117 4.117 3 H 0.115 0.885 4 C -0.004 4.004 5 N -0.332 5.332 6 C 0.279 3.721 7 O -0.459 6.459 8 C 0.010 3.990 9 N -0.342 5.342 10 C -0.053 4.053 11 C 0.316 3.684 12 O -0.370 6.370 13 N -0.329 5.329 14 C -0.058 4.058 15 C 0.400 3.600 16 O -0.458 6.458 17 C -0.011 4.011 18 C -0.182 4.182 19 C 0.065 3.935 20 H 0.069 0.931 21 N -0.388 5.388 22 C -0.338 4.338 23 H 0.083 0.917 24 C -0.251 4.251 25 N -0.636 5.636 26 Si 0.766 3.234 27 H -0.212 1.212 28 H -0.229 1.229 29 H -0.184 1.184 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.102 0.898 35 H 0.143 0.857 36 H 0.191 0.809 37 H 0.188 0.812 38 H 0.153 0.847 39 H 0.107 0.893 40 H 0.116 0.884 41 H 0.101 0.899 42 H 0.070 0.930 43 H 0.138 0.862 44 H 0.086 0.914 45 H 0.109 0.891 46 H 0.194 0.806 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 15.047 15.868 14.343 26.152 hybrid contribution -0.985 -1.487 0.749 1.934 sum 14.062 14.381 15.092 25.146 Atomic orbital electron populations 1.21670 0.94387 1.01459 1.02105 1.21649 0.96360 0.99934 0.93741 0.88510 1.21518 0.79835 0.99900 0.99119 1.48191 1.06601 1.59741 1.18691 1.21711 0.91197 0.77185 0.81962 1.90676 1.76210 1.46897 1.32167 1.21503 0.87223 1.03944 0.86291 1.47133 1.62515 1.10390 1.14176 1.22804 1.04236 0.83922 0.94346 1.21231 0.76443 0.81224 0.89540 1.90811 1.44015 1.38496 1.63692 1.46381 1.57525 1.11656 1.17296 1.21994 1.02059 1.01998 0.79769 1.16026 0.78009 0.84760 0.81235 1.90965 1.59654 1.14296 1.80874 1.21856 0.99133 0.97071 0.83053 1.22370 0.97275 1.01178 0.97354 1.20489 0.93120 0.83727 0.96124 0.93129 1.42864 1.80877 1.10963 1.04118 1.19014 1.33967 0.93815 0.86966 0.91658 1.25253 1.03270 0.97935 0.98614 1.69848 1.55861 1.11239 1.26645 0.85703 0.78313 0.77668 0.81726 1.21238 1.22920 1.18442 0.94269 0.91556 0.92012 0.93728 0.89768 0.85689 0.80891 0.81152 0.84651 0.89313 0.88407 0.89895 0.92978 0.86182 0.91431 0.89122 0.80600 0.93711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.05 71.98 0.65 -3.04 16 2 C -0.10 -2.50 2.67 -10.72 -0.03 -2.53 16 3 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 4 C 0.12 3.32 5.42 86.36 0.47 3.79 16 5 N -0.60 -14.51 2.97 -818.90 -2.43 -16.94 16 6 C 0.49 11.52 7.77 87.66 0.68 12.20 16 7 O -0.58 -18.11 15.84 -3.02 -0.05 -18.16 16 8 C 0.13 1.92 4.97 85.64 0.43 2.34 16 9 N -0.61 -10.08 2.51 -846.24 -2.12 -12.20 16 10 C 0.07 0.72 7.66 85.76 0.66 1.38 16 11 C 0.53 8.83 8.32 87.94 0.73 9.56 16 12 O -0.50 -10.68 17.76 -2.88 -0.05 -10.73 16 13 N -0.58 -11.16 3.00 -796.66 -2.39 -13.55 16 14 C 0.08 1.22 10.73 127.77 1.37 2.59 16 15 C 0.70 16.25 8.31 179.44 1.49 17.74 16 16 O -0.58 -18.27 17.15 -3.82 -0.07 -18.33 16 17 C 0.11 2.45 6.08 86.36 0.52 2.98 16 18 C -0.14 -3.39 5.78 30.67 0.18 -3.21 16 19 C 0.17 5.34 2.53 45.02 0.11 5.46 16 20 H 0.05 1.68 8.08 -2.39 -0.02 1.66 16 21 N -0.74 -30.33 3.44 -322.79 -1.11 -31.44 16 22 C -0.21 -10.65 10.41 84.03 0.87 -9.77 16 23 H 0.07 3.68 8.06 -2.91 -0.02 3.65 16 24 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 25 N -0.98 -60.94 13.97 21.65 0.30 -60.64 16 26 Si 0.94 44.72 27.73 68.60 1.90 46.62 16 27 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 28 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 29 H -0.26 -11.36 6.52 99.48 0.65 -10.71 16 30 H 0.04 1.24 7.54 -2.39 -0.02 1.22 16 31 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.04 1.44 6.64 -2.39 -0.02 1.42 16 34 H 0.08 2.41 7.00 -2.39 -0.02 2.39 16 35 H 0.13 1.81 7.83 -2.39 -0.02 1.79 16 36 H 0.17 0.65 7.70 -2.39 -0.02 0.63 16 37 H 0.17 0.27 8.14 -2.39 -0.02 0.25 16 38 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.10 1.22 8.00 -2.39 -0.02 1.20 16 41 H 0.08 1.34 7.86 -2.39 -0.02 1.32 16 42 H 0.05 1.53 7.74 -2.39 -0.02 1.51 16 43 H 0.12 1.52 5.95 -2.39 -0.01 1.51 16 44 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.36 14.91 3.79 -92.71 -0.35 14.56 16 47 H 0.25 15.23 8.31 -92.70 -0.77 14.46 16 Total: -1.00 -81.37 379.94 3.17 -78.20 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.58 Total: 20.55 kcal Atomic # 6 Polarization: 28.01 SS G_CDS: 8.61 Total: 36.62 kcal Atomic # 7 Polarization: -127.01 SS G_CDS: -7.76 Total: -134.77 kcal Atomic # 8 Polarization: -47.06 SS G_CDS: -0.16 Total: -47.22 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.90 Total: 46.62 kcal Total: -81.37 3.17 -78.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036263562.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.319 kcal (2) G-P(sol) polarization free energy of solvation -81.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds