Wall clock time and date at job start Tue Mar 31 2020 21:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.58510 * 2 1 4 4 C 1.53194 * 109.69900 * 239.64313 * 2 1 3 5 5 C 1.53041 * 109.31060 * 185.50427 * 4 2 1 6 6 H 1.08999 * 109.46161 * 301.36309 * 5 4 2 7 7 N 1.46497 * 109.46018 * 181.38394 * 5 4 2 8 8 C 1.36939 * 119.99695 * 155.00413 * 7 5 4 9 9 H 1.07996 * 120.00433 * 359.97438 * 8 7 5 10 10 C 1.38818 * 120.00037 * 180.02562 * 8 7 5 11 11 N 1.31622 * 119.99631 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00257 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47166 * 89.99759 * 12 10 8 14 14 H 1.48495 * 109.47361 * 210.00038 * 12 10 8 15 15 H 1.48503 * 109.46999 * 329.99806 * 12 10 8 16 16 C 1.53050 * 109.53560 * 61.36586 * 5 4 2 17 17 C 1.53186 * 109.31151 * 298.63565 * 16 5 4 18 18 N 1.46925 * 109.58546 * 120.28281 * 2 1 3 19 19 C 1.34769 * 120.63474 * 353.51438 * 18 2 1 20 20 O 1.21283 * 119.99735 * 354.25048 * 19 18 2 21 21 C 1.50701 * 120.00437 * 174.24862 * 19 18 2 22 22 N 1.46487 * 109.47498 * 180.02562 * 21 19 18 23 23 C 1.46415 * 119.54076 * 89.99877 * 22 21 19 24 24 C 1.53041 * 109.52009 * 144.12227 * 23 22 21 25 25 C 1.50804 * 109.18334 * 46.69996 * 24 23 22 26 26 O 1.21232 * 120.01367 * 145.74459 * 25 24 23 27 27 N 1.34560 * 119.96594 * 325.76377 * 25 24 23 28 28 C 1.34296 * 119.53488 * 269.72460 * 22 21 19 29 29 O 1.21536 * 119.20670 * 5.71403 * 28 22 21 30 30 H 1.09003 * 109.46799 * 305.47003 * 1 2 3 31 31 H 1.08993 * 109.47404 * 65.46926 * 1 2 3 32 32 H 1.09001 * 109.47296 * 185.47426 * 1 2 3 33 33 H 1.08995 * 109.49908 * 305.45899 * 4 2 1 34 34 H 1.09000 * 109.50036 * 65.55891 * 4 2 1 35 35 H 0.96997 * 119.99973 * 335.00265 * 7 5 4 36 36 H 0.97002 * 120.00088 * 180.02562 * 11 10 8 37 37 H 1.08999 * 109.49537 * 178.68358 * 16 5 4 38 38 H 1.08994 * 109.49387 * 58.58681 * 16 5 4 39 39 H 1.09009 * 109.58877 * 294.84420 * 17 16 5 40 40 H 1.09001 * 109.58501 * 174.42529 * 17 16 5 41 41 H 1.09004 * 109.46694 * 300.00329 * 21 19 18 42 42 H 1.08997 * 109.46993 * 59.99467 * 21 19 18 43 43 H 1.08995 * 109.46342 * 264.14263 * 23 22 21 44 44 H 1.09003 * 109.45516 * 24.11931 * 23 22 21 45 45 H 1.08998 * 109.51548 * 166.60822 * 24 23 22 46 46 H 1.09001 * 109.51698 * 286.78592 * 24 23 22 47 47 H 0.96997 * 119.50310 * 184.46122 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0464 -0.7289 -1.2445 5 6 3.5705 -0.8443 -1.1675 6 1 4.0070 0.1519 -1.0963 7 7 4.0709 -1.5117 -2.3718 8 6 5.3555 -1.2922 -2.7925 9 1 5.9996 -0.6270 -2.2367 10 6 5.8296 -1.9241 -3.9340 11 7 5.0445 -2.7345 -4.6117 12 14 7.5816 -1.6243 -4.5082 13 1 8.4855 -2.6220 -3.8815 14 1 7.6476 -1.7559 -5.9859 15 1 8.0046 -0.2565 -4.1138 16 6 3.9602 -1.6608 0.0670 17 6 3.4654 -0.9425 1.3263 18 7 2.0225 -0.6980 1.1954 19 6 1.1672 -1.1059 2.1536 20 8 -0.0064 -0.8075 2.0860 21 6 1.6689 -1.9330 3.3092 22 7 0.5538 -2.2465 4.2059 23 6 -0.2278 -3.4651 3.9870 24 6 -0.6438 -4.0551 5.3364 25 6 -1.1899 -2.9547 6.2112 26 8 -2.0923 -3.1878 6.9865 27 7 -0.6752 -1.7141 6.1305 28 6 0.2662 -1.4151 5.2205 29 8 0.8690 -0.3640 5.3151 30 1 -0.3633 0.5964 0.8370 31 1 -0.3634 0.4266 -0.9348 32 1 -0.3634 -1.0230 0.0980 33 1 1.6079 -1.7257 -1.2905 34 1 1.7688 -0.1673 -2.1365 35 1 3.4923 -2.1089 -2.8712 36 1 5.3758 -3.1764 -5.4091 37 1 5.0446 -1.7624 0.1085 38 1 3.5036 -2.6488 0.0086 39 1 3.9887 0.0077 1.4345 40 1 3.6525 -1.5665 2.2002 41 1 2.1028 -2.8590 2.9319 42 1 2.4278 -1.3722 3.8549 43 1 -1.1180 -3.2260 3.4051 44 1 0.3767 -4.1916 3.4439 45 1 -1.4124 -4.8123 5.1814 46 1 0.2226 -4.5077 5.8186 47 1 -0.9860 -1.0273 6.7409 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044811980.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:09 Heat of formation + Delta-G solvation = -61.538668 kcal Electronic energy + Delta-G solvation = -30358.295639 eV Core-core repulsion = 26156.435998 eV Total energy + Delta-G solvation = -4201.859640 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.03548 -40.44628 -39.21378 -37.52756 -36.49561 -35.03285 -34.55890 -32.99802 -31.98224 -31.71594 -29.43701 -27.95187 -26.92898 -25.47114 -24.35554 -23.50272 -22.98328 -21.91572 -20.32656 -19.62891 -18.96243 -18.59984 -18.04724 -17.29972 -17.11118 -16.67813 -16.21636 -15.61765 -15.38353 -15.06111 -14.90644 -14.83842 -14.75430 -14.03167 -13.89605 -13.75432 -13.51963 -13.46928 -13.26125 -12.97852 -12.74179 -12.44344 -12.18816 -12.09528 -11.86037 -11.64878 -11.42302 -11.06277 -10.95993 -10.88204 -10.81616 -10.64099 -10.57189 -10.50525 -10.29468 -9.95115 -9.79461 -9.67634 -8.97005 -8.80755 -8.47008 -7.04141 -5.83356 -3.12761 1.35232 1.88747 2.56661 2.61753 2.83808 3.07874 3.38281 3.44040 3.45639 3.89142 4.05868 4.36885 4.44712 4.51544 4.53959 4.81031 4.91034 4.96216 5.02935 5.11993 5.22123 5.25693 5.30454 5.43235 5.50409 5.55087 5.58112 5.70332 5.77834 5.85318 5.96631 6.05510 6.09292 6.21529 6.30356 6.38922 6.42698 6.49384 6.68509 6.84346 6.96162 6.98072 7.11311 7.46712 7.63171 7.78342 8.18945 8.34874 9.46259 10.03282 10.37796 11.39091 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023846 B = 0.002340 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.911245 B =11962.246049 C =12200.197840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.148 3.852 3 H 0.070 0.930 4 C -0.134 4.134 5 C 0.178 3.822 6 H 0.048 0.952 7 N -0.724 5.724 8 C -0.240 4.240 9 H 0.071 0.929 10 C -0.013 4.013 11 N -0.932 5.932 12 Si 0.906 3.094 13 H -0.290 1.290 14 H -0.292 1.292 15 H -0.282 1.282 16 C -0.151 4.151 17 C 0.106 3.894 18 N -0.600 5.600 19 C 0.500 3.500 20 O -0.530 6.530 21 C 0.107 3.893 22 N -0.598 5.598 23 C 0.109 3.891 24 C -0.157 4.157 25 C 0.524 3.476 26 O -0.505 6.505 27 N -0.674 5.674 28 C 0.715 3.285 29 O -0.551 6.551 30 H 0.073 0.927 31 H 0.043 0.957 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.083 0.917 44 H 0.105 0.895 45 H 0.128 0.872 46 H 0.115 0.885 47 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.518 -2.201 19.361 21.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.045 3.955 3 H 0.088 0.912 4 C -0.173 4.173 5 C 0.068 3.932 6 H 0.066 0.934 7 N -0.364 5.364 8 C -0.371 4.371 9 H 0.088 0.912 10 C -0.209 4.209 11 N -0.580 5.580 12 Si 0.737 3.263 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.207 1.207 16 C -0.192 4.192 17 C -0.017 4.017 18 N -0.335 5.335 19 C 0.286 3.714 20 O -0.408 6.408 21 C -0.019 4.019 22 N -0.334 5.334 23 C -0.014 4.014 24 C -0.198 4.198 25 C 0.312 3.688 26 O -0.377 6.377 27 N -0.343 5.343 28 C 0.416 3.584 29 O -0.425 6.425 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.217 0.783 36 H 0.065 0.935 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.101 0.899 44 H 0.123 0.877 45 H 0.146 0.854 46 H 0.133 0.867 47 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -10.055 -1.694 19.587 22.082 hybrid contribution 0.852 0.081 -0.392 0.941 sum -9.203 -1.613 19.194 21.347 Atomic orbital electron populations 1.22161 0.92951 1.03224 1.00787 1.21307 0.95317 0.95229 0.83671 0.91165 1.22290 0.97532 1.00876 0.96558 1.20163 0.90887 0.95034 0.87115 0.93423 1.42426 1.12926 1.54267 1.26768 1.19226 0.89092 1.22227 1.06601 0.91153 1.24753 0.98167 0.99831 0.98145 1.69661 1.35392 1.33458 1.19515 0.86209 0.84558 0.77689 0.77831 1.21726 1.21791 1.20747 1.22687 1.01816 0.99947 0.94771 1.21905 0.79510 1.00866 0.99465 1.48215 1.07550 1.57479 1.20232 1.20872 0.86523 0.80600 0.83416 1.90737 1.17200 1.56523 1.76298 1.21485 0.88437 1.01592 0.90391 1.46548 1.34731 1.23841 1.28299 1.21709 0.97546 0.85987 0.96137 1.22280 1.04852 0.97320 0.95306 1.20990 0.81304 0.83576 0.82899 1.90798 1.27218 1.81998 1.37735 1.44233 1.40102 1.14288 1.35679 1.15489 0.79885 0.83469 0.79514 1.91014 1.51792 1.23474 1.76253 0.90767 0.93806 0.92031 0.91850 0.90636 0.78275 0.93475 0.90518 0.92149 0.91117 0.90633 0.86653 0.86504 0.89885 0.87720 0.85431 0.86656 0.73265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 7.62 37.16 0.28 -1.56 16 2 C 0.15 2.02 3.49 -67.60 -0.24 1.79 16 3 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 4 C -0.13 -2.07 4.85 -26.61 -0.13 -2.20 16 5 C 0.18 3.17 2.73 -67.89 -0.19 2.99 16 6 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 7 N -0.72 -16.91 5.12 -53.38 -0.27 -17.18 16 8 C -0.24 -6.29 9.93 -15.06 -0.15 -6.44 16 9 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 10 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 11 N -0.93 -27.20 13.06 55.49 0.72 -26.48 16 12 Si 0.91 21.57 29.55 -169.99 -5.02 16.55 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 C -0.15 -2.22 5.66 -26.61 -0.15 -2.37 16 17 C 0.11 1.18 6.35 -3.71 -0.02 1.15 16 18 N -0.60 -7.48 2.97 -165.22 -0.49 -7.97 16 19 C 0.50 6.17 7.57 -10.99 -0.08 6.09 16 20 O -0.53 -7.98 11.99 5.56 0.07 -7.91 16 21 C 0.11 0.93 4.18 -5.20 -0.02 0.91 16 22 N -0.60 -5.18 2.28 -181.17 -0.41 -5.59 16 23 C 0.11 0.60 6.64 -4.07 -0.03 0.57 16 24 C -0.16 -0.70 6.28 -27.81 -0.17 -0.87 16 25 C 0.52 4.34 7.76 -11.03 -0.09 4.26 16 26 O -0.51 -5.78 17.93 5.60 0.10 -5.68 16 27 N -0.67 -6.00 5.18 -16.03 -0.08 -6.09 16 28 C 0.72 7.72 8.21 -87.78 -0.72 7.00 16 29 O -0.55 -7.89 16.66 5.33 0.09 -7.80 16 30 H 0.07 1.12 6.54 -51.93 -0.34 0.78 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.90 6.95 -51.93 -0.36 0.54 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.38 9.69 7.80 -40.82 -0.32 9.37 16 36 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 40 H 0.08 0.61 5.93 -51.93 -0.31 0.31 16 41 H 0.12 0.65 7.61 -51.93 -0.39 0.25 16 42 H 0.12 1.01 6.99 -51.93 -0.36 0.64 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.10 0.32 7.79 -51.93 -0.40 -0.09 16 45 H 0.13 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.12 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.43 3.46 8.86 -40.82 -0.36 3.10 16 LS Contribution 376.93 15.07 5.68 5.68 Total: -1.00 -35.10 376.93 -8.47 -43.56 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -7.04 Total: 8.04 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: -1.80 Total: 10.86 kcal Atomic # 7 Polarization: -62.77 SS G_CDS: -0.54 Total: -63.30 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: 0.26 Total: -21.39 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.10 -8.47 -43.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044811980.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.976 kcal (2) G-P(sol) polarization free energy of solvation -35.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds