Wall clock time and date at job start Tue Mar 31 2020 21:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.58510 * 2 1 4 4 C 1.53194 * 109.69900 * 239.64313 * 2 1 3 5 5 C 1.53041 * 109.31060 * 185.50427 * 4 2 1 6 6 H 1.08999 * 109.46161 * 301.36309 * 5 4 2 7 7 N 1.46497 * 109.46018 * 181.38394 * 5 4 2 8 8 C 1.36939 * 119.99695 * 155.00413 * 7 5 4 9 9 H 1.07996 * 120.00433 * 359.97438 * 8 7 5 10 10 C 1.38818 * 120.00037 * 180.02562 * 8 7 5 11 11 N 1.31622 * 119.99631 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00257 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47166 * 89.99759 * 12 10 8 14 14 H 1.48495 * 109.47361 * 210.00038 * 12 10 8 15 15 H 1.48503 * 109.46999 * 329.99806 * 12 10 8 16 16 C 1.53050 * 109.53560 * 61.36586 * 5 4 2 17 17 C 1.53186 * 109.31151 * 298.63565 * 16 5 4 18 18 N 1.46925 * 109.58546 * 120.28281 * 2 1 3 19 19 C 1.34769 * 120.63474 * 353.51438 * 18 2 1 20 20 O 1.21283 * 119.99735 * 354.25048 * 19 18 2 21 21 C 1.50701 * 120.00437 * 174.24862 * 19 18 2 22 22 N 1.46487 * 109.47498 * 180.02562 * 21 19 18 23 23 C 1.46415 * 119.54076 * 89.99877 * 22 21 19 24 24 C 1.53041 * 109.52009 * 144.12227 * 23 22 21 25 25 C 1.50804 * 109.18334 * 46.69996 * 24 23 22 26 26 O 1.21232 * 120.01367 * 145.74459 * 25 24 23 27 27 N 1.34560 * 119.96594 * 325.76377 * 25 24 23 28 28 C 1.34296 * 119.53488 * 269.72460 * 22 21 19 29 29 O 1.21536 * 119.20670 * 5.71403 * 28 22 21 30 30 H 1.09003 * 109.46799 * 305.47003 * 1 2 3 31 31 H 1.08993 * 109.47404 * 65.46926 * 1 2 3 32 32 H 1.09001 * 109.47296 * 185.47426 * 1 2 3 33 33 H 1.08995 * 109.49908 * 305.45899 * 4 2 1 34 34 H 1.09000 * 109.50036 * 65.55891 * 4 2 1 35 35 H 0.96997 * 119.99973 * 335.00265 * 7 5 4 36 36 H 0.97002 * 120.00088 * 180.02562 * 11 10 8 37 37 H 1.08999 * 109.49537 * 178.68358 * 16 5 4 38 38 H 1.08994 * 109.49387 * 58.58681 * 16 5 4 39 39 H 1.09009 * 109.58877 * 294.84420 * 17 16 5 40 40 H 1.09001 * 109.58501 * 174.42529 * 17 16 5 41 41 H 1.09004 * 109.46694 * 300.00329 * 21 19 18 42 42 H 1.08997 * 109.46993 * 59.99467 * 21 19 18 43 43 H 1.08995 * 109.46342 * 264.14263 * 23 22 21 44 44 H 1.09003 * 109.45516 * 24.11931 * 23 22 21 45 45 H 1.08998 * 109.51548 * 166.60822 * 24 23 22 46 46 H 1.09001 * 109.51698 * 286.78592 * 24 23 22 47 47 H 0.96997 * 119.50310 * 184.46122 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0464 -0.7289 -1.2445 5 6 3.5705 -0.8443 -1.1675 6 1 4.0070 0.1519 -1.0963 7 7 4.0709 -1.5117 -2.3718 8 6 5.3555 -1.2922 -2.7925 9 1 5.9996 -0.6270 -2.2367 10 6 5.8296 -1.9241 -3.9340 11 7 5.0445 -2.7345 -4.6117 12 14 7.5816 -1.6243 -4.5082 13 1 8.4855 -2.6220 -3.8815 14 1 7.6476 -1.7559 -5.9859 15 1 8.0046 -0.2565 -4.1138 16 6 3.9602 -1.6608 0.0670 17 6 3.4654 -0.9425 1.3263 18 7 2.0225 -0.6980 1.1954 19 6 1.1672 -1.1059 2.1536 20 8 -0.0064 -0.8075 2.0860 21 6 1.6689 -1.9330 3.3092 22 7 0.5538 -2.2465 4.2059 23 6 -0.2278 -3.4651 3.9870 24 6 -0.6438 -4.0551 5.3364 25 6 -1.1899 -2.9547 6.2112 26 8 -2.0923 -3.1878 6.9865 27 7 -0.6752 -1.7141 6.1305 28 6 0.2662 -1.4151 5.2205 29 8 0.8690 -0.3640 5.3151 30 1 -0.3633 0.5964 0.8370 31 1 -0.3634 0.4266 -0.9348 32 1 -0.3634 -1.0230 0.0980 33 1 1.6079 -1.7257 -1.2905 34 1 1.7688 -0.1673 -2.1365 35 1 3.4923 -2.1089 -2.8712 36 1 5.3758 -3.1764 -5.4091 37 1 5.0446 -1.7624 0.1085 38 1 3.5036 -2.6488 0.0086 39 1 3.9887 0.0077 1.4345 40 1 3.6525 -1.5665 2.2002 41 1 2.1028 -2.8590 2.9319 42 1 2.4278 -1.3722 3.8549 43 1 -1.1180 -3.2260 3.4051 44 1 0.3767 -4.1916 3.4439 45 1 -1.4124 -4.8123 5.1814 46 1 0.2226 -4.5077 5.8186 47 1 -0.9860 -1.0273 6.7409 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044811980.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:08 Heat of formation + Delta-G solvation = -87.426600 kcal Electronic energy + Delta-G solvation = -30359.418224 eV Core-core repulsion = 26156.435998 eV Total energy + Delta-G solvation = -4202.982225 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.74930 -41.43972 -40.02299 -38.69900 -37.25967 -36.13055 -35.78128 -34.06835 -33.62875 -32.33989 -30.99032 -28.91021 -28.05135 -26.00066 -25.98166 -24.42213 -24.23326 -22.95278 -21.59964 -20.56408 -19.76562 -19.31864 -19.07073 -18.73908 -18.08137 -17.50165 -17.09957 -16.70295 -16.54842 -16.23788 -15.72800 -15.69487 -15.54348 -15.41990 -15.33517 -14.83449 -14.67001 -14.45018 -14.22786 -14.06386 -13.55540 -13.36976 -13.35975 -13.06269 -12.89648 -12.84455 -12.62379 -12.56533 -12.51000 -12.14779 -11.99459 -11.90503 -11.84421 -11.66838 -11.37561 -11.37234 -11.31920 -10.85427 -10.55859 -9.70496 -9.53610 -8.96585 -7.90436 -5.18320 0.66140 1.20455 1.50715 1.51477 1.59533 1.65831 1.89008 2.15136 2.22130 2.59268 3.39095 3.43135 3.52593 3.64064 3.76658 3.92530 3.99286 4.09337 4.11871 4.16996 4.30481 4.38015 4.38757 4.45123 4.58456 4.62345 4.67352 4.74860 4.82570 4.85903 4.86915 4.94906 5.05164 5.09115 5.13541 5.18590 5.30496 5.44608 5.45562 5.54900 5.60376 5.74687 6.27969 6.31684 6.43782 6.50989 7.02496 7.23811 7.38083 8.14597 8.36927 9.33088 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023846 B = 0.002340 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.911245 B =11962.246049 C =12200.197840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.152 3.848 3 H 0.073 0.927 4 C -0.120 4.120 5 C 0.171 3.829 6 H 0.041 0.959 7 N -0.737 5.737 8 C -0.231 4.231 9 H 0.078 0.922 10 C -0.077 4.077 11 N -0.971 5.971 12 Si 0.968 3.032 13 H -0.287 1.287 14 H -0.301 1.301 15 H -0.270 1.270 16 C -0.139 4.139 17 C 0.113 3.887 18 N -0.603 5.603 19 C 0.494 3.506 20 O -0.562 6.562 21 C 0.108 3.892 22 N -0.594 5.594 23 C 0.105 3.895 24 C -0.145 4.145 25 C 0.523 3.477 26 O -0.542 6.542 27 N -0.674 5.674 28 C 0.713 3.287 29 O -0.593 6.593 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.371 0.629 36 H 0.249 0.751 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.077 0.923 40 H 0.117 0.883 41 H 0.158 0.842 42 H 0.123 0.877 43 H 0.070 0.930 44 H 0.141 0.859 45 H 0.148 0.852 46 H 0.143 0.857 47 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.575 -3.166 20.886 22.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.048 3.952 3 H 0.091 0.909 4 C -0.159 4.159 5 C 0.063 3.937 6 H 0.059 0.941 7 N -0.376 5.376 8 C -0.363 4.363 9 H 0.096 0.904 10 C -0.269 4.269 11 N -0.622 5.622 12 Si 0.798 3.202 13 H -0.214 1.214 14 H -0.228 1.228 15 H -0.195 1.195 16 C -0.179 4.179 17 C -0.009 4.009 18 N -0.337 5.337 19 C 0.282 3.718 20 O -0.441 6.441 21 C -0.018 4.018 22 N -0.329 5.329 23 C -0.016 4.016 24 C -0.185 4.185 25 C 0.313 3.687 26 O -0.416 6.416 27 N -0.342 5.342 28 C 0.415 3.585 29 O -0.470 6.470 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.202 0.798 36 H 0.058 0.942 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.135 0.865 41 H 0.175 0.825 42 H 0.141 0.859 43 H 0.088 0.912 44 H 0.159 0.841 45 H 0.166 0.834 46 H 0.160 0.840 47 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -9.111 -2.658 21.163 23.193 hybrid contribution 0.467 0.446 -0.821 1.045 sum -8.644 -2.212 20.341 22.212 Atomic orbital electron populations 1.21987 0.92915 1.02345 1.00488 1.21157 0.95177 0.95259 0.83587 0.90892 1.22107 0.95908 1.00604 0.97244 1.20428 0.92071 0.94680 0.86535 0.94052 1.42641 1.12030 1.54438 1.28540 1.19603 0.90105 1.20721 1.05894 0.90425 1.25502 1.01791 1.00680 0.98977 1.69814 1.37060 1.35276 1.20067 0.85217 0.80490 0.77992 0.76544 1.21374 1.22825 1.19526 1.22432 1.01224 0.99530 0.94761 1.21950 0.78464 1.01600 0.98926 1.48268 1.08209 1.57342 1.19863 1.21583 0.86050 0.80242 0.83921 1.90733 1.18626 1.57586 1.77153 1.21662 0.88389 1.02876 0.88846 1.46691 1.34775 1.24189 1.27216 1.21971 0.97420 0.85390 0.96840 1.22367 1.06238 0.95959 0.93910 1.21766 0.80474 0.83822 0.82610 1.90787 1.28902 1.82393 1.39562 1.44272 1.39663 1.14884 1.35365 1.15683 0.79629 0.83190 0.80029 1.90982 1.53379 1.25302 1.77377 0.92022 0.93252 0.92968 0.92440 0.91812 0.79777 0.94239 0.91460 0.92371 0.90425 0.86497 0.82474 0.85914 0.91156 0.84131 0.83426 0.83966 0.73434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.24 7.62 71.98 0.55 -2.69 16 2 C 0.15 3.99 3.49 44.98 0.16 4.14 16 3 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 4 C -0.12 -3.65 4.85 30.67 0.15 -3.50 16 5 C 0.17 5.94 2.73 45.02 0.12 6.07 16 6 H 0.04 1.49 8.08 -2.39 -0.02 1.47 16 7 N -0.74 -34.47 5.12 -322.80 -1.65 -36.13 16 8 C -0.23 -12.04 9.93 84.03 0.83 -11.20 16 9 H 0.08 3.85 7.83 -2.91 -0.02 3.83 16 10 C -0.08 -4.27 5.50 84.86 0.47 -3.80 16 11 N -0.97 -57.62 13.06 21.65 0.28 -57.33 16 12 Si 0.97 44.40 29.55 68.60 2.03 46.43 16 13 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 14 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 15 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 16 C -0.14 -3.78 5.66 30.67 0.17 -3.61 16 17 C 0.11 2.14 6.35 86.36 0.55 2.69 16 18 N -0.60 -13.59 2.97 -795.02 -2.36 -15.96 16 19 C 0.49 11.01 7.57 87.66 0.66 11.68 16 20 O -0.56 -16.22 11.99 -3.04 -0.04 -16.26 16 21 C 0.11 1.48 4.18 85.64 0.36 1.84 16 22 N -0.59 -8.59 2.28 -845.66 -1.93 -10.52 16 23 C 0.11 0.78 6.64 86.41 0.57 1.35 16 24 C -0.15 -0.80 6.28 29.89 0.19 -0.61 16 25 C 0.52 7.91 7.76 87.72 0.68 8.59 16 26 O -0.54 -12.05 17.93 -2.88 -0.05 -12.10 16 27 N -0.67 -11.52 5.18 -441.71 -2.29 -13.81 16 28 C 0.71 14.44 8.21 179.35 1.47 15.91 16 29 O -0.59 -16.56 16.66 -3.83 -0.06 -16.62 16 30 H 0.06 1.84 6.54 -2.39 -0.02 1.82 16 31 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.05 1.50 6.95 -2.39 -0.02 1.48 16 33 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.37 19.03 7.80 -92.71 -0.72 18.31 16 36 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 37 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.06 1.62 8.14 -2.39 -0.02 1.61 16 39 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 40 H 0.12 1.31 5.93 -2.39 -0.01 1.30 16 41 H 0.16 0.85 7.61 -2.38 -0.02 0.83 16 42 H 0.12 1.63 6.99 -2.39 -0.02 1.62 16 43 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.14 0.10 7.79 -2.39 -0.02 0.08 16 45 H 0.15 0.31 8.14 -2.39 -0.02 0.29 16 46 H 0.14 0.12 8.14 -2.39 -0.02 0.10 16 47 H 0.42 7.02 8.86 -92.71 -0.82 6.20 16 Total: -1.00 -78.76 376.93 0.33 -78.44 By element: Atomic # 1 Polarization: 27.54 SS G_CDS: -0.53 Total: 27.01 kcal Atomic # 6 Polarization: 19.92 SS G_CDS: 6.93 Total: 26.85 kcal Atomic # 7 Polarization: -125.80 SS G_CDS: -7.95 Total: -133.75 kcal Atomic # 8 Polarization: -44.83 SS G_CDS: -0.15 Total: -44.99 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -78.76 0.33 -78.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044811980.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.990 kcal (2) G-P(sol) polarization free energy of solvation -78.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds