Wall clock time and date at job start Tue Mar 31 2020 21:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.58425 * 2 1 4 4 C 1.53195 * 109.58433 * 239.71901 * 2 1 3 5 5 C 1.53038 * 109.31078 * 294.70127 * 4 2 1 6 6 H 1.09004 * 109.46331 * 58.66047 * 5 4 2 7 7 N 1.46497 * 109.44923 * 178.62020 * 5 4 2 8 8 C 1.36935 * 120.00537 * 205.06700 * 7 5 4 9 9 H 1.08005 * 119.99899 * 359.97438 * 8 7 5 10 10 C 1.38809 * 120.00468 * 180.02562 * 8 7 5 11 11 N 1.31626 * 120.00023 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 120.00324 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.46693 * 59.99773 * 12 10 8 14 14 H 1.48504 * 109.47059 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.46913 * 299.99716 * 12 10 8 16 16 C 1.53035 * 109.54175 * 298.63655 * 5 4 2 17 17 C 1.53191 * 109.31327 * 61.36680 * 16 5 4 18 18 N 1.46926 * 108.89109 * 305.29292 * 17 16 5 19 19 C 1.34778 * 120.63336 * 233.68039 * 18 17 16 20 20 O 1.21273 * 120.00022 * 180.02562 * 19 18 17 21 21 C 1.50706 * 119.99581 * 0.02562 * 19 18 17 22 22 N 1.46498 * 109.46828 * 180.02562 * 21 19 18 23 23 C 1.46416 * 119.53227 * 269.72323 * 22 21 19 24 24 C 1.53351 * 109.34825 * 144.04747 * 23 22 21 25 25 C 1.50817 * 109.08702 * 46.99603 * 24 23 22 26 26 O 1.21235 * 120.01347 * 145.63245 * 25 24 23 27 27 N 1.34552 * 119.96202 * 325.60832 * 25 24 23 28 28 C 1.34285 * 119.54054 * 89.99934 * 22 21 19 29 29 O 1.21546 * 119.20901 * 5.68210 * 28 22 21 30 30 H 1.09002 * 109.47076 * 180.28600 * 1 2 3 31 31 H 1.09000 * 109.46738 * 300.27632 * 1 2 3 32 32 H 1.09000 * 109.47393 * 60.28415 * 1 2 3 33 33 H 1.09002 * 109.49713 * 174.75374 * 4 2 1 34 34 H 1.08996 * 109.49824 * 54.65492 * 4 2 1 35 35 H 0.97003 * 120.00041 * 25.06135 * 7 5 4 36 36 H 0.96994 * 119.99876 * 180.02562 * 11 10 8 37 37 H 1.09003 * 109.49576 * 301.41349 * 16 5 4 38 38 H 1.09004 * 109.49734 * 181.31718 * 16 5 4 39 39 H 1.09002 * 109.58786 * 65.15336 * 17 16 5 40 40 H 1.08996 * 109.58870 * 185.43616 * 17 16 5 41 41 H 1.09001 * 109.46865 * 299.99350 * 21 19 18 42 42 H 1.08994 * 109.47133 * 59.99884 * 21 19 18 43 43 H 1.08998 * 109.46245 * 264.18302 * 23 22 21 44 44 H 1.08999 * 109.46264 * 24.15428 * 23 22 21 45 45 H 1.08996 * 109.69703 * 287.03923 * 24 23 22 46 46 H 1.09001 * 109.44239 * 166.79767 * 24 23 22 47 47 H 0.97006 * 119.50440 * 184.41330 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 -1.2464 5 6 1.6445 -2.2033 -1.1712 6 1 0.5598 -2.2830 -1.0992 7 7 2.1055 -2.8953 -2.3773 8 6 1.4694 -4.0318 -2.8002 9 1 0.6279 -4.4183 -2.2442 10 6 1.9065 -4.6878 -3.9427 11 7 2.9323 -4.2172 -4.6200 12 14 1.0391 -6.2386 -4.5191 13 1 -0.3855 -5.9318 -4.8044 14 1 1.6934 -6.7421 -5.7535 15 1 1.1196 -7.2743 -3.4579 16 6 2.2859 -2.8449 0.0613 17 6 1.7751 -2.1411 1.3225 18 7 2.0257 -0.6989 1.1970 19 6 2.6976 -0.0325 2.1568 20 8 2.8977 1.1580 2.0417 21 6 3.2002 -0.7671 3.3729 22 7 3.8917 0.1721 4.2595 23 6 5.3310 0.3883 4.1005 24 6 5.6583 1.8593 4.3847 25 6 4.9689 2.2808 5.6582 26 8 5.4998 3.0798 6.3994 27 7 3.7641 1.7698 5.9709 28 6 3.1976 0.8185 5.2101 29 8 2.0287 0.5358 5.3867 30 1 -0.3633 -1.0277 0.0051 31 1 -0.3633 0.5181 0.8875 32 1 -0.3634 0.5094 -0.8925 33 1 3.1295 -0.6465 -1.2936 34 1 1.6055 -0.2773 -2.1370 35 1 2.8614 -2.5485 -2.8766 36 1 3.2375 -4.6754 -5.4186 37 1 3.3696 -2.7437 0.0017 38 1 2.0203 -3.9013 0.1013 39 1 0.7051 -2.3180 1.4317 40 1 2.3004 -2.5287 2.1953 41 1 2.3579 -1.2126 3.9022 42 1 3.8912 -1.5514 3.0639 43 1 5.8733 -0.2493 4.7986 44 1 5.6248 0.1418 3.0802 45 1 5.3091 2.4795 3.5592 46 1 6.7361 1.9758 4.4984 47 1 3.2978 2.0928 6.7578 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044811981.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:14 Heat of formation + Delta-G solvation = -75.916288 kcal Electronic energy + Delta-G solvation = -30366.335270 eV Core-core repulsion = 26163.852170 eV Total energy + Delta-G solvation = -4202.483101 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.00746 -40.31511 -39.19736 -37.74677 -36.43914 -34.97606 -34.60718 -32.80035 -31.88762 -31.67654 -29.47898 -27.94525 -27.31138 -25.45919 -24.27655 -23.49417 -23.05509 -21.91088 -20.70137 -19.35597 -18.70112 -18.45493 -17.96507 -17.57004 -17.07672 -16.73199 -16.19493 -15.58407 -15.31507 -14.99005 -14.89598 -14.88301 -14.67211 -14.07929 -13.87190 -13.80041 -13.56210 -13.46380 -13.17014 -12.99585 -12.81798 -12.60556 -12.27349 -12.01546 -11.85545 -11.70900 -11.33929 -11.03163 -10.98031 -10.92265 -10.81198 -10.61723 -10.55698 -10.52317 -10.28187 -10.20074 -9.79904 -9.68107 -9.16124 -8.95592 -8.58050 -7.04213 -5.83334 -3.12801 1.37575 1.92628 2.53171 2.68227 2.73770 3.10816 3.38616 3.43629 3.44553 3.95147 4.09608 4.34268 4.51307 4.52963 4.53985 4.86802 4.94772 4.96547 5.04041 5.09572 5.19849 5.25961 5.28454 5.40320 5.50705 5.53289 5.58196 5.68122 5.73453 5.77457 5.84999 6.01839 6.08347 6.13754 6.23626 6.30612 6.39394 6.47600 6.55321 6.82712 6.96950 6.97467 7.13606 7.41668 7.62236 7.78618 8.10307 8.34941 9.46169 10.03320 10.37627 11.39037 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.024626 B = 0.002357 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.726921 B =11874.800684 C =12063.645055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.143 3.857 3 H 0.094 0.906 4 C -0.132 4.132 5 C 0.179 3.821 6 H 0.051 0.949 7 N -0.724 5.724 8 C -0.241 4.241 9 H 0.070 0.930 10 C -0.012 4.012 11 N -0.932 5.932 12 Si 0.906 3.094 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 C -0.151 4.151 17 C 0.104 3.896 18 N -0.597 5.597 19 C 0.499 3.501 20 O -0.543 6.543 21 C 0.108 3.892 22 N -0.599 5.599 23 C 0.112 3.888 24 C -0.158 4.158 25 C 0.527 3.473 26 O -0.506 6.506 27 N -0.674 5.674 28 C 0.717 3.283 29 O -0.554 6.554 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.383 0.617 36 H 0.256 0.744 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.122 0.878 42 H 0.117 0.883 43 H 0.081 0.919 44 H 0.104 0.896 45 H 0.121 0.879 46 H 0.126 0.874 47 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.928 8.450 18.647 20.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.112 0.888 4 C -0.171 4.171 5 C 0.068 3.932 6 H 0.069 0.931 7 N -0.364 5.364 8 C -0.372 4.372 9 H 0.088 0.912 10 C -0.208 4.208 11 N -0.580 5.580 12 Si 0.737 3.263 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 C -0.192 4.192 17 C -0.020 4.020 18 N -0.331 5.331 19 C 0.285 3.715 20 O -0.421 6.421 21 C -0.018 4.018 22 N -0.335 5.335 23 C -0.011 4.011 24 C -0.198 4.198 25 C 0.315 3.685 26 O -0.379 6.379 27 N -0.343 5.343 28 C 0.418 3.582 29 O -0.429 6.429 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.217 0.783 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.140 0.860 42 H 0.135 0.865 43 H 0.099 0.901 44 H 0.122 0.878 45 H 0.139 0.861 46 H 0.144 0.856 47 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 3.697 9.132 18.839 21.259 hybrid contribution -0.360 -0.751 -0.337 0.899 sum 3.336 8.381 18.502 20.584 Atomic orbital electron populations 1.22134 0.94951 1.02822 1.01963 1.21232 0.94078 0.96998 0.83727 0.88829 1.22209 1.01260 0.97272 0.96382 1.20190 0.96856 0.89089 0.87034 0.93066 1.42426 1.38064 1.29303 1.26604 1.19170 1.10369 1.01106 1.06549 0.91233 1.24748 0.98470 0.99460 0.98165 1.69649 1.27576 1.41379 1.19435 0.86291 0.78857 0.83217 0.77939 1.21259 1.21719 1.21261 1.22686 1.01175 1.00612 0.94751 1.21903 1.01393 0.79120 0.99536 1.48311 1.54778 1.09605 1.20385 1.20952 0.78328 0.87935 0.84268 1.90664 1.57885 1.15032 1.78481 1.21445 0.99983 0.90900 0.89511 1.46596 1.08753 1.44903 1.33275 1.21736 0.79756 0.94987 1.04585 1.22314 1.03526 0.98031 0.95955 1.21014 0.80068 0.79745 0.87671 1.90791 1.63756 1.32366 1.50952 1.44239 1.21340 1.38306 1.30413 1.15505 0.84562 0.78991 0.79096 1.91006 1.14408 1.67094 1.70369 0.91597 0.92859 0.91327 0.91901 0.90553 0.78301 0.93419 0.92157 0.90507 0.91103 0.90657 0.86049 0.86469 0.90113 0.87796 0.86103 0.85634 0.73374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.03 37.16 0.34 -1.65 16 2 C 0.14 1.91 3.21 -67.44 -0.22 1.70 16 3 H 0.09 1.35 7.02 -51.93 -0.36 0.98 16 4 C -0.13 -2.02 5.02 -26.61 -0.13 -2.15 16 5 C 0.18 3.12 2.53 -67.89 -0.17 2.95 16 6 H 0.05 0.92 6.45 -51.93 -0.33 0.59 16 7 N -0.72 -16.76 5.12 -53.39 -0.27 -17.03 16 8 C -0.24 -6.26 9.93 -15.06 -0.15 -6.41 16 9 H 0.07 1.75 7.83 -52.48 -0.41 1.33 16 10 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 11 N -0.93 -27.12 13.06 55.49 0.72 -26.39 16 12 Si 0.91 21.49 29.55 -169.99 -5.02 16.47 16 13 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 15 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 16 C -0.15 -2.21 5.66 -26.61 -0.15 -2.36 16 17 C 0.10 1.14 5.92 -3.71 -0.02 1.12 16 18 N -0.60 -7.33 2.70 -165.01 -0.44 -7.78 16 19 C 0.50 6.18 7.77 -10.98 -0.09 6.09 16 20 O -0.54 -8.39 15.86 5.56 0.09 -8.30 16 21 C 0.11 0.95 4.19 -5.19 -0.02 0.93 16 22 N -0.60 -5.33 2.28 -180.96 -0.41 -5.75 16 23 C 0.11 0.63 6.60 -3.91 -0.03 0.61 16 24 C -0.16 -0.98 6.30 -27.64 -0.17 -1.15 16 25 C 0.53 4.80 7.76 -11.03 -0.09 4.72 16 26 O -0.51 -6.08 17.93 5.60 0.10 -5.98 16 27 N -0.67 -6.26 5.18 -16.02 -0.08 -6.34 16 28 C 0.72 7.92 8.22 -87.75 -0.72 7.20 16 29 O -0.55 -7.92 16.57 5.33 0.09 -7.83 16 30 H 0.07 0.83 5.74 -51.93 -0.30 0.53 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.38 9.62 7.80 -40.82 -0.32 9.31 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.07 0.76 7.49 -51.93 -0.39 0.37 16 40 H 0.08 0.61 5.93 -51.93 -0.31 0.30 16 41 H 0.12 1.08 7.07 -51.93 -0.37 0.71 16 42 H 0.12 0.67 7.61 -51.93 -0.40 0.28 16 43 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.10 0.49 8.01 -51.93 -0.42 0.08 16 45 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.13 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.43 3.47 8.86 -40.82 -0.36 3.11 16 LS Contribution 378.59 15.07 5.71 5.71 Total: -1.00 -34.96 378.59 -8.15 -43.12 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -6.90 Total: 8.96 kcal Atomic # 6 Polarization: 12.87 SS G_CDS: -1.72 Total: 11.15 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: -0.49 Total: -63.29 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: 0.28 Total: -22.11 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.96 -8.15 -43.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044811981.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.801 kcal (2) G-P(sol) polarization free energy of solvation -34.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds