Wall clock time and date at job start Tue Mar 31 2020 21:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.58425 * 2 1 4 4 C 1.53195 * 109.58433 * 239.71901 * 2 1 3 5 5 C 1.53038 * 109.31078 * 294.70127 * 4 2 1 6 6 H 1.09004 * 109.46331 * 58.66047 * 5 4 2 7 7 N 1.46497 * 109.44923 * 178.62020 * 5 4 2 8 8 C 1.36935 * 120.00537 * 205.06700 * 7 5 4 9 9 H 1.08005 * 119.99899 * 359.97438 * 8 7 5 10 10 C 1.38809 * 120.00468 * 180.02562 * 8 7 5 11 11 N 1.31626 * 120.00023 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 120.00324 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.46693 * 59.99773 * 12 10 8 14 14 H 1.48504 * 109.47059 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.46913 * 299.99716 * 12 10 8 16 16 C 1.53035 * 109.54175 * 298.63655 * 5 4 2 17 17 C 1.53191 * 109.31327 * 61.36680 * 16 5 4 18 18 N 1.46926 * 108.89109 * 305.29292 * 17 16 5 19 19 C 1.34778 * 120.63336 * 233.68039 * 18 17 16 20 20 O 1.21273 * 120.00022 * 180.02562 * 19 18 17 21 21 C 1.50706 * 119.99581 * 0.02562 * 19 18 17 22 22 N 1.46498 * 109.46828 * 180.02562 * 21 19 18 23 23 C 1.46416 * 119.53227 * 269.72323 * 22 21 19 24 24 C 1.53351 * 109.34825 * 144.04747 * 23 22 21 25 25 C 1.50817 * 109.08702 * 46.99603 * 24 23 22 26 26 O 1.21235 * 120.01347 * 145.63245 * 25 24 23 27 27 N 1.34552 * 119.96202 * 325.60832 * 25 24 23 28 28 C 1.34285 * 119.54054 * 89.99934 * 22 21 19 29 29 O 1.21546 * 119.20901 * 5.68210 * 28 22 21 30 30 H 1.09002 * 109.47076 * 180.28600 * 1 2 3 31 31 H 1.09000 * 109.46738 * 300.27632 * 1 2 3 32 32 H 1.09000 * 109.47393 * 60.28415 * 1 2 3 33 33 H 1.09002 * 109.49713 * 174.75374 * 4 2 1 34 34 H 1.08996 * 109.49824 * 54.65492 * 4 2 1 35 35 H 0.97003 * 120.00041 * 25.06135 * 7 5 4 36 36 H 0.96994 * 119.99876 * 180.02562 * 11 10 8 37 37 H 1.09003 * 109.49576 * 301.41349 * 16 5 4 38 38 H 1.09004 * 109.49734 * 181.31718 * 16 5 4 39 39 H 1.09002 * 109.58786 * 65.15336 * 17 16 5 40 40 H 1.08996 * 109.58870 * 185.43616 * 17 16 5 41 41 H 1.09001 * 109.46865 * 299.99350 * 21 19 18 42 42 H 1.08994 * 109.47133 * 59.99884 * 21 19 18 43 43 H 1.08998 * 109.46245 * 264.18302 * 23 22 21 44 44 H 1.08999 * 109.46264 * 24.15428 * 23 22 21 45 45 H 1.08996 * 109.69703 * 287.03923 * 24 23 22 46 46 H 1.09001 * 109.44239 * 166.79767 * 24 23 22 47 47 H 0.97006 * 119.50440 * 184.41330 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 -1.2464 5 6 1.6445 -2.2033 -1.1712 6 1 0.5598 -2.2830 -1.0992 7 7 2.1055 -2.8953 -2.3773 8 6 1.4694 -4.0318 -2.8002 9 1 0.6279 -4.4183 -2.2442 10 6 1.9065 -4.6878 -3.9427 11 7 2.9323 -4.2172 -4.6200 12 14 1.0391 -6.2386 -4.5191 13 1 -0.3855 -5.9318 -4.8044 14 1 1.6934 -6.7421 -5.7535 15 1 1.1196 -7.2743 -3.4579 16 6 2.2859 -2.8449 0.0613 17 6 1.7751 -2.1411 1.3225 18 7 2.0257 -0.6989 1.1970 19 6 2.6976 -0.0325 2.1568 20 8 2.8977 1.1580 2.0417 21 6 3.2002 -0.7671 3.3729 22 7 3.8917 0.1721 4.2595 23 6 5.3310 0.3883 4.1005 24 6 5.6583 1.8593 4.3847 25 6 4.9689 2.2808 5.6582 26 8 5.4998 3.0798 6.3994 27 7 3.7641 1.7698 5.9709 28 6 3.1976 0.8185 5.2101 29 8 2.0287 0.5358 5.3867 30 1 -0.3633 -1.0277 0.0051 31 1 -0.3633 0.5181 0.8875 32 1 -0.3634 0.5094 -0.8925 33 1 3.1295 -0.6465 -1.2936 34 1 1.6055 -0.2773 -2.1370 35 1 2.8614 -2.5485 -2.8766 36 1 3.2375 -4.6754 -5.4186 37 1 3.3696 -2.7437 0.0017 38 1 2.0203 -3.9013 0.1013 39 1 0.7051 -2.3180 1.4317 40 1 2.3004 -2.5287 2.1953 41 1 2.3579 -1.2126 3.9022 42 1 3.8912 -1.5514 3.0639 43 1 5.8733 -0.2493 4.7986 44 1 5.6248 0.1418 3.0802 45 1 5.3091 2.4795 3.5592 46 1 6.7361 1.9758 4.4984 47 1 3.2978 2.0928 6.7578 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044811981.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:13 Heat of formation + Delta-G solvation = -101.531364 kcal Electronic energy + Delta-G solvation = -30367.446023 eV Core-core repulsion = 26163.852170 eV Total energy + Delta-G solvation = -4203.593854 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.75655 -41.31959 -40.05422 -38.88572 -37.21906 -36.18214 -35.76380 -33.99020 -33.40587 -32.35624 -31.00297 -28.87945 -28.43477 -26.03183 -25.92329 -24.37384 -24.29259 -23.08315 -21.81782 -20.14669 -19.62879 -19.37228 -18.96622 -18.69842 -18.41695 -17.57127 -17.10249 -16.70819 -16.49524 -16.09016 -15.71629 -15.69062 -15.63158 -15.45046 -15.23538 -14.88055 -14.74680 -14.41026 -14.20985 -14.00675 -13.97080 -13.52369 -13.14970 -12.99404 -12.92182 -12.81288 -12.68153 -12.59590 -12.40030 -12.19121 -12.03366 -11.90979 -11.85152 -11.65517 -11.40866 -11.38854 -11.14478 -11.03847 -10.81993 -9.91226 -9.63491 -8.95462 -7.89461 -5.17241 0.62058 1.22516 1.51114 1.52879 1.58630 1.60229 1.89225 1.99683 2.28018 2.60036 3.36825 3.43806 3.47279 3.60675 3.81402 3.91032 3.98522 4.07396 4.10605 4.14599 4.29267 4.38473 4.42769 4.43156 4.55671 4.57012 4.64304 4.66950 4.82495 4.83943 4.88103 4.93059 5.02824 5.06781 5.10862 5.14316 5.28164 5.37644 5.42797 5.56351 5.60760 5.70293 6.25553 6.32547 6.40448 6.46015 7.00270 7.15243 7.38892 8.15926 8.37807 9.33924 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.024626 B = 0.002357 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.726921 B =11874.800684 C =12063.645055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.149 3.851 3 H 0.084 0.916 4 C -0.120 4.120 5 C 0.173 3.827 6 H 0.049 0.951 7 N -0.738 5.738 8 C -0.231 4.231 9 H 0.078 0.922 10 C -0.078 4.078 11 N -0.972 5.972 12 Si 0.967 3.033 13 H -0.281 1.281 14 H -0.301 1.301 15 H -0.276 1.276 16 C -0.140 4.140 17 C 0.111 3.889 18 N -0.598 5.598 19 C 0.495 3.505 20 O -0.578 6.578 21 C 0.109 3.891 22 N -0.596 5.596 23 C 0.107 3.893 24 C -0.152 4.152 25 C 0.528 3.472 26 O -0.539 6.539 27 N -0.672 5.672 28 C 0.714 3.286 29 O -0.593 6.593 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.370 0.630 36 H 0.249 0.751 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.116 0.884 41 H 0.126 0.874 42 H 0.158 0.842 43 H 0.110 0.890 44 H 0.120 0.880 45 H 0.113 0.887 46 H 0.152 0.848 47 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.148 7.445 20.261 21.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.045 3.955 3 H 0.102 0.898 4 C -0.159 4.159 5 C 0.065 3.935 6 H 0.067 0.933 7 N -0.377 5.377 8 C -0.363 4.363 9 H 0.096 0.904 10 C -0.270 4.270 11 N -0.623 5.623 12 Si 0.797 3.203 13 H -0.207 1.207 14 H -0.228 1.228 15 H -0.202 1.202 16 C -0.181 4.181 17 C -0.012 4.012 18 N -0.331 5.331 19 C 0.283 3.717 20 O -0.458 6.458 21 C -0.017 4.017 22 N -0.331 5.331 23 C -0.014 4.014 24 C -0.192 4.192 25 C 0.319 3.681 26 O -0.413 6.413 27 N -0.340 5.340 28 C 0.416 3.584 29 O -0.470 6.470 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.201 0.799 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.134 0.866 41 H 0.144 0.856 42 H 0.176 0.824 43 H 0.128 0.872 44 H 0.138 0.862 45 H 0.131 0.869 46 H 0.170 0.830 47 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 3.909 8.122 20.503 22.397 hybrid contribution -0.447 -0.338 -0.797 0.974 sum 3.462 7.784 19.706 21.469 Atomic orbital electron populations 1.22074 0.94015 1.02865 1.02306 1.21038 0.94699 0.96279 0.83497 0.89811 1.22044 1.00628 0.96028 0.97208 1.20443 0.96817 0.90002 0.86268 0.93308 1.42652 1.37572 1.29057 1.28391 1.19564 1.09717 1.01192 1.05799 0.90379 1.25496 0.99722 1.02699 0.99042 1.69807 1.29588 1.42895 1.19978 0.85302 0.77760 0.80154 0.77102 1.20710 1.22790 1.20192 1.22444 1.00617 1.00093 0.94935 1.21953 1.02434 0.77873 0.98942 1.48356 1.54691 1.10085 1.20003 1.21636 0.77426 0.87694 0.84901 1.90655 1.59060 1.16720 1.79322 1.21622 1.01273 0.91062 0.87724 1.46758 1.09943 1.44201 1.32196 1.22066 0.77954 0.94876 1.06467 1.22379 1.04716 0.98407 0.93699 1.21554 0.79606 0.78851 0.88135 1.90780 1.64426 1.33851 1.52281 1.44238 1.21482 1.37920 1.30333 1.15691 0.84239 0.79070 0.79441 1.90976 1.16097 1.68298 1.71655 0.91595 0.92594 0.90974 0.92722 0.91615 0.79871 0.94270 0.92626 0.91442 0.90204 0.86582 0.85601 0.82417 0.87153 0.86192 0.86899 0.83013 0.73236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.03 71.98 0.65 -2.97 16 2 C 0.15 3.82 3.21 44.92 0.14 3.97 16 3 H 0.08 2.37 7.02 -2.39 -0.02 2.35 16 4 C -0.12 -3.62 5.02 30.67 0.15 -3.47 16 5 C 0.17 5.89 2.53 45.02 0.11 6.00 16 6 H 0.05 1.70 6.45 -2.39 -0.02 1.68 16 7 N -0.74 -34.21 5.12 -322.83 -1.65 -35.86 16 8 C -0.23 -11.92 9.93 84.03 0.83 -11.08 16 9 H 0.08 3.82 7.83 -2.91 -0.02 3.80 16 10 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 11 N -0.97 -57.56 13.06 21.65 0.28 -57.28 16 12 Si 0.97 44.23 29.55 68.60 2.03 46.26 16 13 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 14 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 15 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 16 C -0.14 -3.81 5.66 30.67 0.17 -3.64 16 17 C 0.11 2.06 5.92 86.36 0.51 2.57 16 18 N -0.60 -13.29 2.70 -794.36 -2.14 -15.43 16 19 C 0.50 11.05 7.77 87.66 0.68 11.73 16 20 O -0.58 -17.04 15.86 -3.01 -0.05 -17.09 16 21 C 0.11 1.53 4.19 85.64 0.36 1.89 16 22 N -0.60 -8.91 2.28 -844.99 -1.93 -10.84 16 23 C 0.11 0.83 6.60 86.51 0.57 1.40 16 24 C -0.15 -1.52 6.30 30.00 0.19 -1.34 16 25 C 0.53 8.98 7.76 87.73 0.68 9.66 16 26 O -0.54 -12.59 17.93 -2.89 -0.05 -12.64 16 27 N -0.67 -11.90 5.18 -441.64 -2.29 -14.18 16 28 C 0.71 14.72 8.22 179.35 1.47 16.19 16 29 O -0.59 -16.38 16.57 -3.86 -0.06 -16.44 16 30 H 0.07 1.54 5.74 -2.39 -0.01 1.52 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.37 18.93 7.80 -92.71 -0.72 18.21 16 36 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 37 H 0.05 1.57 8.14 -2.39 -0.02 1.56 16 38 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.08 1.43 7.49 -2.39 -0.02 1.41 16 40 H 0.12 1.29 5.93 -2.39 -0.01 1.28 16 41 H 0.13 1.77 7.07 -2.39 -0.02 1.75 16 42 H 0.16 0.95 7.61 -2.39 -0.02 0.93 16 43 H 0.11 0.28 8.14 -2.39 -0.02 0.27 16 44 H 0.12 0.63 8.01 -2.39 -0.02 0.61 16 45 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.15 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.43 6.92 8.86 -92.70 -0.82 6.09 16 Total: -1.00 -77.62 378.59 0.62 -77.00 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: -0.52 Total: 29.37 kcal Atomic # 6 Polarization: 20.13 SS G_CDS: 7.00 Total: 27.13 kcal Atomic # 7 Polarization: -125.87 SS G_CDS: -7.72 Total: -133.59 kcal Atomic # 8 Polarization: -46.01 SS G_CDS: -0.16 Total: -46.17 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -77.62 0.62 -77.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044811981.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.530 kcal (2) G-P(sol) polarization free energy of solvation -77.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds