Wall clock time and date at job start Tue Mar 31 2020 21:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.58308 * 2 1 4 4 C 1.53194 * 109.58470 * 239.57182 * 2 1 3 5 5 C 1.53041 * 109.30810 * 185.57927 * 4 2 1 6 6 H 1.09001 * 109.45211 * 301.35329 * 5 4 2 7 7 N 1.46498 * 109.45851 * 181.38615 * 5 4 2 8 8 C 1.36937 * 120.00071 * 154.93358 * 7 5 4 9 9 H 1.08000 * 119.99967 * 359.97438 * 8 7 5 10 10 C 1.38815 * 119.99931 * 180.02562 * 8 7 5 11 11 N 1.31612 * 119.99992 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99861 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47514 * 89.99653 * 12 10 8 14 14 H 1.48501 * 109.47183 * 209.99914 * 12 10 8 15 15 H 1.48507 * 109.47091 * 329.99936 * 12 10 8 16 16 C 1.53039 * 109.54086 * 61.36574 * 5 4 2 17 17 C 1.53192 * 109.31268 * 298.63612 * 16 5 4 18 18 N 1.46922 * 108.77880 * 54.63221 * 17 16 5 19 19 C 1.34773 * 120.63423 * 126.41272 * 18 17 16 20 20 O 1.21279 * 120.00483 * 174.21539 * 19 18 17 21 21 C 1.50701 * 119.99896 * 354.21328 * 19 18 17 22 22 N 1.46501 * 109.47436 * 179.97438 * 21 19 18 23 23 C 1.47309 * 126.69289 * 269.71743 * 22 21 19 24 24 C 1.51579 * 103.59325 * 179.97438 * 23 22 21 25 25 O 1.21232 * 127.15610 * 180.08172 * 24 23 22 26 26 N 1.34762 * 105.68599 * 0.32655 * 24 23 22 27 27 C 1.46505 * 124.18131 * 179.82199 * 26 24 23 28 28 C 1.33796 * 111.64713 * 359.78548 * 26 24 23 29 29 O 1.21534 * 123.77394 * 179.97438 * 28 26 24 30 30 H 1.08998 * 109.46936 * 305.51764 * 1 2 3 31 31 H 1.08997 * 109.46424 * 65.51744 * 1 2 3 32 32 H 1.09000 * 109.46629 * 185.51293 * 1 2 3 33 33 H 1.08990 * 109.49595 * 65.63057 * 4 2 1 34 34 H 1.09000 * 109.50016 * 305.52650 * 4 2 1 35 35 H 0.97001 * 120.00205 * 334.93422 * 7 5 4 36 36 H 0.97000 * 120.00037 * 180.02562 * 11 10 8 37 37 H 1.09007 * 109.49401 * 58.58404 * 16 5 4 38 38 H 1.08999 * 109.49984 * 178.68312 * 16 5 4 39 39 H 1.09001 * 109.58657 * 174.42347 * 17 16 5 40 40 H 1.09004 * 109.58607 * 294.84427 * 17 16 5 41 41 H 1.09000 * 109.47300 * 299.99905 * 21 19 18 42 42 H 1.09008 * 109.47076 * 60.00000 * 21 19 18 43 43 H 1.09002 * 110.59271 * 298.56196 * 23 22 21 44 44 H 1.08999 * 110.60003 * 61.50033 * 23 22 21 45 45 H 1.09007 * 109.46724 * 269.96235 * 27 26 24 46 46 H 1.08998 * 109.46815 * 29.95673 * 27 26 24 47 47 H 1.08997 * 109.47604 * 149.96362 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7310 -1.2445 5 6 3.5675 -0.8495 -1.1690 6 1 4.0060 0.1460 -1.0993 7 7 4.0653 -1.5188 -2.3734 8 6 5.3494 -1.3012 -2.7964 9 1 5.9950 -0.6360 -2.2425 10 6 5.8208 -1.9350 -3.9380 11 7 5.0338 -2.7453 -4.6133 12 14 7.5722 -1.6377 -4.5155 13 1 8.4762 -2.6356 -3.8891 14 1 7.6356 -1.7712 -5.9931 15 1 7.9973 -0.2699 -4.1233 16 6 3.9570 -1.6656 0.0656 17 6 3.4650 -0.9453 1.3250 18 7 2.0226 -0.6981 1.1954 19 6 1.1674 -1.1035 2.1550 20 8 -0.0056 -0.8025 2.0886 21 6 1.6687 -1.9309 3.3105 22 7 0.5541 -2.2404 4.2094 23 6 0.1071 -1.4428 5.3643 24 6 -1.0662 -2.2323 5.9098 25 8 -1.7547 -1.9531 6.8678 26 7 -1.1815 -3.3121 5.1117 27 6 -2.1948 -4.3564 5.2811 28 6 -0.2566 -3.3121 4.1449 29 8 -0.1593 -4.1832 3.3030 30 1 -0.3633 0.5970 0.8364 31 1 -0.3632 0.4259 -0.9353 32 1 -0.3632 -1.0229 0.0987 33 1 1.7661 -0.1695 -2.1365 34 1 1.6031 -1.7270 -1.2892 35 1 3.4852 -2.1160 -2.8712 36 1 5.3633 -3.1885 -5.4108 37 1 3.4983 -2.6529 0.0086 38 1 5.0412 -1.7695 0.1060 39 1 3.6518 -1.5690 2.1992 40 1 3.9903 0.0038 1.4318 41 1 2.1001 -2.8581 2.9333 42 1 2.4295 -1.3713 3.8550 43 1 0.8998 -1.3684 6.1088 44 1 -0.2142 -0.4516 5.0445 45 1 -1.8063 -5.1370 5.9354 46 1 -3.0917 -3.9239 5.7245 47 1 -2.4404 -4.7855 4.3097 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044816014.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:27 Heat of formation + Delta-G solvation = -59.955012 kcal Electronic energy + Delta-G solvation = -30303.527782 eV Core-core repulsion = 26101.736814 eV Total energy + Delta-G solvation = -4201.790968 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.37082 -41.48491 -39.75409 -38.74645 -37.29642 -36.32989 -36.08715 -34.10495 -33.64333 -31.35532 -30.75575 -28.43455 -28.14324 -27.47826 -25.98765 -24.39963 -23.85397 -22.92726 -21.73568 -21.26381 -20.16935 -19.09947 -18.60997 -18.43686 -17.76350 -17.64221 -17.16444 -16.76101 -16.70314 -16.22419 -15.84302 -15.50077 -15.39951 -15.37860 -15.13058 -15.09061 -14.70776 -14.60852 -14.21265 -14.19082 -13.67944 -13.56281 -13.43992 -13.38878 -13.11618 -12.93606 -12.85309 -12.63300 -12.56623 -12.15230 -12.09135 -12.02058 -11.90885 -11.68140 -11.39297 -11.34956 -10.95158 -10.86847 -10.64188 -9.77827 -9.55061 -8.98870 -7.91301 -5.20083 0.54902 0.94870 1.49576 1.50925 1.57122 1.59181 1.78341 1.91780 2.18998 2.58507 3.02054 3.42096 3.46803 3.66745 3.76520 3.90802 4.06963 4.13364 4.16077 4.24672 4.29025 4.34722 4.36508 4.37623 4.39008 4.47763 4.60265 4.65519 4.68642 4.73313 4.77532 4.84016 4.85079 5.04828 5.09730 5.15200 5.20939 5.31298 5.43064 5.53548 5.59370 5.72194 5.99398 6.28236 6.30148 6.47659 6.92262 7.18734 7.35832 8.12456 8.34662 9.32644 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023287 B = 0.002365 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.122650 B =11835.567848 C =12059.172844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.155 3.845 3 H 0.091 0.909 4 C -0.125 4.125 5 C 0.173 3.827 6 H 0.053 0.947 7 N -0.741 5.741 8 C -0.231 4.231 9 H 0.083 0.917 10 C -0.082 4.082 11 N -0.975 5.975 12 Si 0.971 3.029 13 H -0.288 1.288 14 H -0.302 1.302 15 H -0.265 1.265 16 C -0.145 4.145 17 C 0.113 3.887 18 N -0.602 5.602 19 C 0.490 3.510 20 O -0.562 6.562 21 C 0.131 3.869 22 N -0.605 5.605 23 C 0.073 3.927 24 C 0.525 3.475 25 O -0.499 6.499 26 N -0.584 5.584 27 C 0.082 3.918 28 C 0.697 3.303 29 O -0.583 6.583 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.034 0.966 33 H 0.065 0.935 34 H 0.042 0.958 35 H 0.368 0.632 36 H 0.248 0.752 37 H 0.041 0.959 38 H 0.070 0.930 39 H 0.118 0.882 40 H 0.097 0.903 41 H 0.120 0.880 42 H 0.173 0.827 43 H 0.171 0.829 44 H 0.138 0.862 45 H 0.088 0.912 46 H 0.097 0.903 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.795 5.156 25.417 27.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.051 3.949 3 H 0.109 0.891 4 C -0.164 4.164 5 C 0.065 3.935 6 H 0.071 0.929 7 N -0.379 5.379 8 C -0.363 4.363 9 H 0.101 0.899 10 C -0.273 4.273 11 N -0.626 5.626 12 Si 0.801 3.199 13 H -0.215 1.215 14 H -0.229 1.229 15 H -0.190 1.190 16 C -0.186 4.186 17 C -0.009 4.009 18 N -0.335 5.335 19 C 0.278 3.722 20 O -0.442 6.442 21 C 0.007 3.993 22 N -0.341 5.341 23 C -0.052 4.052 24 C 0.315 3.685 25 O -0.372 6.372 26 N -0.329 5.329 27 C -0.058 4.058 28 C 0.399 3.601 29 O -0.459 6.459 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.199 0.801 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.088 0.912 39 H 0.136 0.864 40 H 0.115 0.885 41 H 0.138 0.862 42 H 0.191 0.809 43 H 0.188 0.812 44 H 0.155 0.845 45 H 0.106 0.894 46 H 0.116 0.884 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.508 5.071 25.384 27.248 hybrid contribution 0.371 -0.769 -1.544 1.764 sum -8.137 4.302 23.840 25.556 Atomic orbital electron populations 1.22012 0.93336 1.01614 1.00990 1.21185 0.94861 0.95691 0.83159 0.89127 1.22161 0.96261 1.00077 0.97907 1.20439 0.91823 0.94970 0.86292 0.92918 1.42710 1.12173 1.54394 1.28653 1.19653 0.90033 1.20717 1.05850 0.89925 1.25577 1.02040 1.00651 0.99077 1.69834 1.37239 1.35348 1.20174 0.85163 0.80137 0.78152 0.76466 1.21513 1.22928 1.19012 1.22480 1.01317 0.99131 0.95655 1.22016 0.78253 1.02137 0.98473 1.48294 1.08406 1.57254 1.19590 1.21607 0.86073 0.80030 0.84520 1.90743 1.18435 1.57465 1.77507 1.21552 0.86870 1.01973 0.88930 1.47130 1.33138 1.22806 1.31055 1.22793 0.96613 0.96801 0.88947 1.21264 0.85344 0.80703 0.81186 1.90810 1.48607 1.71638 1.26110 1.46385 1.31665 1.25600 1.29238 1.21983 0.90191 0.89489 1.04162 1.16041 0.79842 0.83192 0.81010 1.90979 1.73833 1.41453 1.39638 0.90752 0.93259 0.94654 0.91618 0.93932 0.80130 0.94299 0.94047 0.91167 0.86434 0.88527 0.86181 0.80930 0.81220 0.84465 0.89388 0.88399 0.90001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.34 7.61 71.99 0.55 -2.79 16 2 C 0.15 3.93 3.49 44.98 0.16 4.09 16 3 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 4 C -0.12 -4.02 4.84 30.67 0.15 -3.87 16 5 C 0.17 6.13 2.73 45.02 0.12 6.26 16 6 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 7 N -0.74 -35.87 5.12 -322.81 -1.65 -37.53 16 8 C -0.23 -12.19 9.93 84.03 0.83 -11.35 16 9 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 10 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 11 N -0.97 -59.64 13.06 21.65 0.28 -59.35 16 12 Si 0.97 45.01 29.55 68.60 2.03 47.03 16 13 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 14 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 15 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 16 C -0.14 -4.16 5.66 30.67 0.17 -3.99 16 17 C 0.11 1.94 6.35 86.36 0.55 2.49 16 18 N -0.60 -12.86 2.97 -795.01 -2.36 -15.22 16 19 C 0.49 10.51 7.57 87.66 0.66 11.17 16 20 O -0.56 -15.92 12.00 -3.03 -0.04 -15.95 16 21 C 0.13 1.72 4.98 85.63 0.43 2.15 16 22 N -0.60 -9.62 2.51 -846.22 -2.12 -11.74 16 23 C 0.07 0.68 7.66 85.76 0.66 1.33 16 24 C 0.53 8.63 8.31 87.94 0.73 9.36 16 25 O -0.50 -10.59 17.76 -2.88 -0.05 -10.64 16 26 N -0.58 -11.15 3.00 -796.65 -2.39 -13.54 16 27 C 0.08 1.25 10.73 127.77 1.37 2.62 16 28 C 0.70 16.19 8.31 179.44 1.49 17.68 16 29 O -0.58 -18.65 17.15 -3.82 -0.07 -18.71 16 30 H 0.07 2.04 6.54 -2.39 -0.02 2.03 16 31 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.03 1.14 6.96 -2.39 -0.02 1.13 16 33 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.37 19.91 7.80 -92.71 -0.72 19.18 16 36 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 37 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.12 1.09 5.93 -2.39 -0.01 1.08 16 40 H 0.10 1.29 8.14 -2.39 -0.02 1.28 16 41 H 0.12 1.74 7.81 -2.39 -0.02 1.72 16 42 H 0.17 0.35 7.71 -2.38 -0.02 0.34 16 43 H 0.17 0.13 8.14 -2.39 -0.02 0.11 16 44 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 46 H 0.10 1.25 8.00 -2.39 -0.02 1.23 16 47 H 0.08 1.38 7.86 -2.39 -0.02 1.36 16 Total: -1.00 -81.81 382.37 2.24 -79.58 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 0.27 Total: 25.08 kcal Atomic # 6 Polarization: 22.67 SS G_CDS: 8.34 Total: 31.01 kcal Atomic # 7 Polarization: -129.14 SS G_CDS: -8.25 Total: -137.39 kcal Atomic # 8 Polarization: -45.15 SS G_CDS: -0.15 Total: -45.31 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -81.81 2.24 -79.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044816014.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.621 kcal (2) G-P(sol) polarization free energy of solvation -81.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds