Wall clock time and date at job start Tue Mar 31 2020 21:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.58151 * 2 1 4 4 C 1.53197 * 109.58739 * 239.57735 * 2 1 3 5 5 C 1.53042 * 109.30981 * 185.57674 * 4 2 1 6 6 H 1.09005 * 109.44482 * 181.37936 * 5 4 2 7 7 N 1.46497 * 109.45881 * 301.33761 * 5 4 2 8 8 C 1.36936 * 120.00297 * 205.06955 * 7 5 4 9 9 H 1.08001 * 119.99559 * 0.02562 * 8 7 5 10 10 C 1.38804 * 120.00406 * 180.02562 * 8 7 5 11 11 N 1.31614 * 120.00236 * 180.02562 * 10 8 7 12 12 Si 1.86802 * 119.99883 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.47672 * 270.00275 * 12 10 8 14 14 H 1.48506 * 109.47083 * 149.99840 * 12 10 8 15 15 H 1.48503 * 109.47084 * 30.00765 * 12 10 8 16 16 C 1.53031 * 109.54143 * 61.36372 * 5 4 2 17 17 C 1.53192 * 109.31124 * 298.63206 * 16 5 4 18 18 N 1.46927 * 108.77732 * 54.64043 * 17 16 5 19 19 C 1.34770 * 120.63745 * 126.41423 * 18 17 16 20 20 O 1.21284 * 120.00374 * 174.21287 * 19 18 17 21 21 C 1.50702 * 119.99713 * 354.20470 * 19 18 17 22 22 N 1.46505 * 109.47210 * 179.97438 * 21 19 18 23 23 C 1.47311 * 126.69285 * 269.71712 * 22 21 19 24 24 C 1.51581 * 103.59092 * 179.97438 * 23 22 21 25 25 O 1.21233 * 127.15594 * 180.02562 * 24 23 22 26 26 N 1.34766 * 105.68640 * 0.33401 * 24 23 22 27 27 C 1.46500 * 124.17607 * 179.74386 * 26 24 23 28 28 C 1.33790 * 111.64401 * 359.77845 * 26 24 23 29 29 O 1.21537 * 123.77132 * 179.97438 * 28 26 24 30 30 H 1.08999 * 109.46751 * 305.50896 * 1 2 3 31 31 H 1.08991 * 109.47412 * 65.51488 * 1 2 3 32 32 H 1.09008 * 109.46371 * 185.51329 * 1 2 3 33 33 H 1.08998 * 109.49690 * 65.61861 * 4 2 1 34 34 H 1.09005 * 109.49453 * 305.52302 * 4 2 1 35 35 H 0.97006 * 120.00015 * 25.07786 * 7 5 4 36 36 H 0.97006 * 120.00082 * 179.97438 * 11 10 8 37 37 H 1.09005 * 109.50298 * 58.58347 * 16 5 4 38 38 H 1.08995 * 109.50286 * 178.65039 * 16 5 4 39 39 H 1.09002 * 109.58818 * 174.41966 * 17 16 5 40 40 H 1.08993 * 109.59137 * 294.70271 * 17 16 5 41 41 H 1.08996 * 109.47550 * 300.00887 * 21 19 18 42 42 H 1.09005 * 109.47023 * 60.00839 * 21 19 18 43 43 H 1.08999 * 110.59892 * 298.55883 * 23 22 21 44 44 H 1.08997 * 110.60041 * 61.50799 * 23 22 21 45 45 H 1.08993 * 109.47386 * 270.03519 * 27 26 24 46 46 H 1.09002 * 109.47490 * 30.04417 * 27 26 24 47 47 H 1.09004 * 109.47111 * 150.04045 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7309 -1.2446 5 6 3.5676 -0.8493 -1.1691 6 1 3.9377 -1.3473 -2.0653 7 7 4.1570 0.4886 -1.0756 8 6 5.4409 0.7025 -1.5012 9 1 6.0188 -0.1152 -1.9061 10 6 5.9996 1.9700 -1.4122 11 7 7.2334 2.1756 -1.8217 12 14 4.9998 3.3843 -0.7124 13 1 4.2603 4.0584 -1.8097 14 1 5.9103 4.3580 -0.0580 15 1 4.0340 2.8610 0.2869 16 6 3.9570 -1.6655 0.0654 17 6 3.4652 -0.9452 1.3248 18 7 2.0226 -0.6981 1.1953 19 6 1.1676 -1.1035 2.1549 20 8 -0.0055 -0.8026 2.0886 21 6 1.6690 -1.9309 3.3104 22 7 0.5544 -2.2405 4.2094 23 6 0.1075 -1.4429 5.3644 24 6 -1.0658 -2.2324 5.9100 25 8 -1.7536 -1.9537 6.8686 26 7 -1.1810 -3.3122 5.1119 27 6 -2.1933 -4.3574 5.2824 28 6 -0.2562 -3.3122 4.1451 29 8 -0.1589 -4.1833 3.3032 30 1 -0.3633 0.5969 0.8366 31 1 -0.3634 0.4259 -0.9352 32 1 -0.3632 -1.0230 0.0987 33 1 1.7660 -0.1694 -2.1366 34 1 1.6031 -1.7269 -1.2892 35 1 3.6379 1.2230 -0.7122 36 1 7.6237 3.0615 -1.7598 37 1 3.4985 -2.6527 0.0085 38 1 5.0412 -1.7698 0.1055 39 1 3.6519 -1.5689 2.1990 40 1 3.9922 0.0027 1.4330 41 1 2.1004 -2.8580 2.9332 42 1 2.4297 -1.3713 3.8549 43 1 0.9002 -1.3685 6.1088 44 1 -0.2139 -0.4517 5.0447 45 1 -1.8040 -5.1369 5.9372 46 1 -3.0907 -3.9253 5.7254 47 1 -2.4386 -4.7876 4.3114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044816017.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:32 Heat of formation + Delta-G solvation = -28.360826 kcal Electronic energy + Delta-G solvation = -30871.507676 eV Core-core repulsion = 26671.086735 eV Total energy + Delta-G solvation = -4200.420941 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.61079 -40.50374 -38.91748 -37.74010 -36.40246 -35.51449 -34.42392 -32.97838 -32.01943 -30.45905 -29.69134 -27.50996 -27.38148 -26.65452 -24.35221 -23.20415 -23.00445 -22.04304 -20.82694 -19.98854 -18.58363 -17.85306 -17.80906 -17.58380 -17.00157 -16.71014 -16.18716 -15.91459 -15.38365 -14.95844 -14.64263 -14.50857 -14.49596 -14.35842 -14.27315 -13.80401 -13.58397 -13.50203 -13.27865 -13.03662 -12.95454 -12.70734 -12.47546 -12.31701 -12.06421 -11.72801 -11.39323 -11.22555 -11.09602 -10.99057 -10.83565 -10.59698 -10.56610 -10.33056 -10.15129 -10.12454 -9.77328 -9.64164 -9.04727 -8.82492 -8.40259 -7.36578 -5.85104 -3.21231 1.29197 1.66458 2.47765 2.55736 2.68596 3.10815 3.27738 3.32235 3.38815 3.68336 4.28782 4.35758 4.50315 4.64770 4.74859 4.86642 4.91673 4.94803 4.98272 5.07360 5.15403 5.16121 5.26126 5.26446 5.39798 5.45603 5.50274 5.52966 5.66307 5.81030 5.85027 5.95603 5.98060 6.10625 6.24163 6.32703 6.39767 6.54087 6.58093 6.64188 6.75319 6.85995 6.99033 7.47735 7.75425 7.91040 8.15592 8.33871 9.11757 9.84287 10.03759 11.33160 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020936 B = 0.002853 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.067333 B = 9811.708496 C =10089.955995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.145 3.855 3 H 0.072 0.928 4 C -0.137 4.137 5 C 0.179 3.821 6 H 0.061 0.939 7 N -0.746 5.746 8 C -0.244 4.244 9 H 0.091 0.909 10 C 0.007 3.993 11 N -0.932 5.932 12 Si 0.881 3.119 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.279 1.279 16 C -0.150 4.150 17 C 0.110 3.890 18 N -0.597 5.597 19 C 0.494 3.506 20 O -0.532 6.532 21 C 0.131 3.869 22 N -0.608 5.608 23 C 0.065 3.935 24 C 0.527 3.473 25 O -0.474 6.474 26 N -0.579 5.579 27 C 0.089 3.911 28 C 0.706 3.294 29 O -0.538 6.538 30 H 0.074 0.926 31 H 0.043 0.957 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.360 0.640 36 H 0.260 0.740 37 H 0.055 0.945 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.072 0.928 46 H 0.087 0.913 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.345 -10.464 14.601 22.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.043 3.957 3 H 0.090 0.910 4 C -0.176 4.176 5 C 0.070 3.930 6 H 0.079 0.921 7 N -0.390 5.390 8 C -0.373 4.373 9 H 0.109 0.891 10 C -0.189 4.189 11 N -0.580 5.580 12 Si 0.711 3.289 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.205 1.205 16 C -0.191 4.191 17 C -0.012 4.012 18 N -0.331 5.331 19 C 0.280 3.720 20 O -0.410 6.410 21 C 0.006 3.994 22 N -0.345 5.345 23 C -0.061 4.061 24 C 0.314 3.686 25 O -0.344 6.344 26 N -0.325 5.325 27 C -0.052 4.052 28 C 0.408 3.592 29 O -0.411 6.411 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.194 0.806 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.139 0.861 42 H 0.136 0.864 43 H 0.143 0.857 44 H 0.144 0.856 45 H 0.091 0.909 46 H 0.106 0.894 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.000 -10.677 14.446 23.402 hybrid contribution -0.388 1.189 0.407 1.315 sum -15.388 -9.488 14.852 23.397 Atomic orbital electron populations 1.22187 0.93003 1.03238 1.00817 1.21265 0.95058 0.95543 0.83882 0.90990 1.22299 0.97409 1.00755 0.97153 1.20156 0.90119 0.87105 0.95655 0.92089 1.42878 1.14356 1.05250 1.76548 1.19063 0.88207 0.95937 1.34125 0.89115 1.24654 0.96045 0.97085 1.01155 1.69691 1.13512 1.22030 1.52758 0.86635 0.79587 0.83601 0.79069 1.21066 1.21734 1.20529 1.22493 1.02048 0.98113 0.96464 1.21806 0.78950 1.01772 0.98686 1.48224 1.07824 1.57041 1.20021 1.20934 0.86577 0.80626 0.83900 1.90743 1.17090 1.56578 1.76592 1.21305 0.86381 1.01999 0.89700 1.46987 1.33586 1.23410 1.30565 1.22537 0.96573 0.97745 0.89268 1.20844 0.84988 0.80944 0.81803 1.90818 1.47469 1.71148 1.24965 1.46232 1.31884 1.24865 1.29554 1.21826 0.90019 0.89223 1.04140 1.15741 0.79341 0.82882 0.81215 1.90991 1.72633 1.39573 1.37876 0.90747 0.93844 0.91962 0.90546 0.91491 0.80642 0.93015 0.92677 0.90099 0.90964 0.89808 0.86121 0.86410 0.85710 0.85637 0.90893 0.89414 0.89157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 7.61 37.16 0.28 -1.67 16 2 C 0.15 2.15 3.19 -67.59 -0.22 1.94 16 3 H 0.07 1.18 6.65 -51.93 -0.35 0.84 16 4 C -0.14 -2.03 5.07 -26.61 -0.13 -2.16 16 5 C 0.18 3.04 3.10 -67.89 -0.21 2.83 16 6 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 7 N -0.75 -15.74 4.11 -53.39 -0.22 -15.96 16 8 C -0.24 -6.30 10.41 -15.06 -0.16 -6.46 16 9 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 10 C 0.01 0.18 5.50 -17.44 -0.10 0.08 16 11 N -0.93 -27.99 13.97 55.49 0.78 -27.21 16 12 Si 0.88 20.98 27.74 -169.99 -4.71 16.26 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 15 H -0.28 -6.17 6.52 56.52 0.37 -5.80 16 16 C -0.15 -2.16 5.78 -26.62 -0.15 -2.31 16 17 C 0.11 1.41 6.09 -3.71 -0.02 1.38 16 18 N -0.60 -8.02 2.97 -165.22 -0.49 -8.52 16 19 C 0.49 6.36 7.57 -10.99 -0.08 6.28 16 20 O -0.53 -8.24 12.00 5.55 0.07 -8.17 16 21 C 0.13 1.20 4.98 -5.19 -0.03 1.18 16 22 N -0.61 -5.96 2.51 -181.39 -0.45 -6.42 16 23 C 0.06 0.47 7.66 -4.32 -0.03 0.44 16 24 C 0.53 5.02 8.31 -10.56 -0.09 4.93 16 25 O -0.47 -5.56 17.76 5.60 0.10 -5.46 16 26 N -0.58 -5.81 3.00 -128.17 -0.39 -6.20 16 27 C 0.09 0.66 10.73 59.85 0.64 1.31 16 28 C 0.71 8.47 8.31 -88.02 -0.73 7.74 16 29 O -0.54 -8.19 17.15 5.33 0.09 -8.10 16 30 H 0.07 1.15 6.54 -51.93 -0.34 0.81 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.97 6.96 -51.92 -0.36 0.61 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.36 7.60 3.93 -40.82 -0.16 7.44 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.07 0.66 5.93 -51.93 -0.31 0.35 16 40 H 0.08 1.26 7.74 -51.93 -0.40 0.86 16 41 H 0.12 1.07 7.81 -51.93 -0.41 0.66 16 42 H 0.12 0.69 7.71 -51.93 -0.40 0.29 16 43 H 0.13 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.13 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.09 0.56 8.01 -51.93 -0.42 0.15 16 47 H 0.09 0.69 7.86 -51.93 -0.41 0.28 16 LS Contribution 374.98 15.07 5.65 5.65 Total: -1.00 -34.74 374.98 -7.55 -42.28 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -6.94 Total: 6.32 kcal Atomic # 6 Polarization: 16.54 SS G_CDS: -1.03 Total: 15.52 kcal Atomic # 7 Polarization: -63.52 SS G_CDS: -0.78 Total: -64.30 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: 0.26 Total: -21.73 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.71 Total: 16.26 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.74 -7.55 -42.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044816017.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.923 kcal (2) G-P(sol) polarization free energy of solvation -34.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds