Wall clock time and date at job start Tue Mar 31 2020 21:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.58151 * 2 1 4 4 C 1.53197 * 109.58739 * 239.57735 * 2 1 3 5 5 C 1.53042 * 109.30981 * 185.57674 * 4 2 1 6 6 H 1.09005 * 109.44482 * 181.37936 * 5 4 2 7 7 N 1.46497 * 109.45881 * 301.33761 * 5 4 2 8 8 C 1.36936 * 120.00297 * 205.06955 * 7 5 4 9 9 H 1.08001 * 119.99559 * 0.02562 * 8 7 5 10 10 C 1.38804 * 120.00406 * 180.02562 * 8 7 5 11 11 N 1.31614 * 120.00236 * 180.02562 * 10 8 7 12 12 Si 1.86802 * 119.99883 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.47672 * 270.00275 * 12 10 8 14 14 H 1.48506 * 109.47083 * 149.99840 * 12 10 8 15 15 H 1.48503 * 109.47084 * 30.00765 * 12 10 8 16 16 C 1.53031 * 109.54143 * 61.36372 * 5 4 2 17 17 C 1.53192 * 109.31124 * 298.63206 * 16 5 4 18 18 N 1.46927 * 108.77732 * 54.64043 * 17 16 5 19 19 C 1.34770 * 120.63745 * 126.41423 * 18 17 16 20 20 O 1.21284 * 120.00374 * 174.21287 * 19 18 17 21 21 C 1.50702 * 119.99713 * 354.20470 * 19 18 17 22 22 N 1.46505 * 109.47210 * 179.97438 * 21 19 18 23 23 C 1.47311 * 126.69285 * 269.71712 * 22 21 19 24 24 C 1.51581 * 103.59092 * 179.97438 * 23 22 21 25 25 O 1.21233 * 127.15594 * 180.02562 * 24 23 22 26 26 N 1.34766 * 105.68640 * 0.33401 * 24 23 22 27 27 C 1.46500 * 124.17607 * 179.74386 * 26 24 23 28 28 C 1.33790 * 111.64401 * 359.77845 * 26 24 23 29 29 O 1.21537 * 123.77132 * 179.97438 * 28 26 24 30 30 H 1.08999 * 109.46751 * 305.50896 * 1 2 3 31 31 H 1.08991 * 109.47412 * 65.51488 * 1 2 3 32 32 H 1.09008 * 109.46371 * 185.51329 * 1 2 3 33 33 H 1.08998 * 109.49690 * 65.61861 * 4 2 1 34 34 H 1.09005 * 109.49453 * 305.52302 * 4 2 1 35 35 H 0.97006 * 120.00015 * 25.07786 * 7 5 4 36 36 H 0.97006 * 120.00082 * 179.97438 * 11 10 8 37 37 H 1.09005 * 109.50298 * 58.58347 * 16 5 4 38 38 H 1.08995 * 109.50286 * 178.65039 * 16 5 4 39 39 H 1.09002 * 109.58818 * 174.41966 * 17 16 5 40 40 H 1.08993 * 109.59137 * 294.70271 * 17 16 5 41 41 H 1.08996 * 109.47550 * 300.00887 * 21 19 18 42 42 H 1.09005 * 109.47023 * 60.00839 * 21 19 18 43 43 H 1.08999 * 110.59892 * 298.55883 * 23 22 21 44 44 H 1.08997 * 110.60041 * 61.50799 * 23 22 21 45 45 H 1.08993 * 109.47386 * 270.03519 * 27 26 24 46 46 H 1.09002 * 109.47490 * 30.04417 * 27 26 24 47 47 H 1.09004 * 109.47111 * 150.04045 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7309 -1.2446 5 6 3.5676 -0.8493 -1.1691 6 1 3.9377 -1.3473 -2.0653 7 7 4.1570 0.4886 -1.0756 8 6 5.4409 0.7025 -1.5012 9 1 6.0188 -0.1152 -1.9061 10 6 5.9996 1.9700 -1.4122 11 7 7.2334 2.1756 -1.8217 12 14 4.9998 3.3843 -0.7124 13 1 4.2603 4.0584 -1.8097 14 1 5.9103 4.3580 -0.0580 15 1 4.0340 2.8610 0.2869 16 6 3.9570 -1.6655 0.0654 17 6 3.4652 -0.9452 1.3248 18 7 2.0226 -0.6981 1.1953 19 6 1.1676 -1.1035 2.1549 20 8 -0.0055 -0.8026 2.0886 21 6 1.6690 -1.9309 3.3104 22 7 0.5544 -2.2405 4.2094 23 6 0.1075 -1.4429 5.3644 24 6 -1.0658 -2.2324 5.9100 25 8 -1.7536 -1.9537 6.8686 26 7 -1.1810 -3.3122 5.1119 27 6 -2.1933 -4.3574 5.2824 28 6 -0.2562 -3.3122 4.1451 29 8 -0.1589 -4.1833 3.3032 30 1 -0.3633 0.5969 0.8366 31 1 -0.3634 0.4259 -0.9352 32 1 -0.3632 -1.0230 0.0987 33 1 1.7660 -0.1694 -2.1366 34 1 1.6031 -1.7269 -1.2892 35 1 3.6379 1.2230 -0.7122 36 1 7.6237 3.0615 -1.7598 37 1 3.4985 -2.6527 0.0085 38 1 5.0412 -1.7698 0.1055 39 1 3.6519 -1.5689 2.1990 40 1 3.9922 0.0027 1.4330 41 1 2.1004 -2.8580 2.9332 42 1 2.4297 -1.3713 3.8549 43 1 0.9002 -1.3685 6.1088 44 1 -0.2139 -0.4517 5.0447 45 1 -1.8040 -5.1369 5.9372 46 1 -3.0907 -3.9253 5.7254 47 1 -2.4386 -4.7876 4.3114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044816017.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:31 Heat of formation + Delta-G solvation = -52.376808 kcal Electronic energy + Delta-G solvation = -30872.549087 eV Core-core repulsion = 26671.086735 eV Total energy + Delta-G solvation = -4201.462352 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.37840 -41.56911 -39.77272 -38.94375 -37.29013 -36.30505 -35.91956 -34.14235 -33.70892 -31.53523 -31.02881 -28.53205 -28.15008 -27.48852 -25.66687 -24.93844 -23.85571 -23.03829 -21.78715 -21.02067 -19.79075 -19.71744 -18.62114 -18.42575 -17.76554 -17.64557 -17.22249 -16.80744 -16.58574 -16.29419 -15.91726 -15.62079 -15.40241 -15.23501 -15.12775 -15.09925 -14.89181 -14.60669 -14.35413 -14.22249 -13.90099 -13.69162 -13.55078 -13.39628 -13.10544 -12.99400 -12.95978 -12.62477 -12.50718 -12.11135 -12.07486 -11.98586 -11.90008 -11.68601 -11.44175 -11.39793 -10.94491 -10.93245 -10.64429 -9.77638 -9.55756 -9.23535 -7.97034 -5.29068 0.53682 0.94361 1.38214 1.41940 1.48616 1.57128 1.75319 1.90497 2.16729 2.51141 3.00935 3.34946 3.45047 3.61815 3.65890 3.89530 3.94747 4.04585 4.15118 4.21079 4.27799 4.32312 4.33955 4.34898 4.40157 4.46957 4.47936 4.61840 4.69455 4.74558 4.78266 4.82208 4.89179 5.05614 5.09948 5.17225 5.24768 5.29035 5.34271 5.40299 5.70533 5.85408 5.98517 6.26577 6.26892 6.47442 6.91858 7.13561 7.16700 7.89895 8.08342 9.24712 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020936 B = 0.002853 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.067333 B = 9811.708496 C =10089.955995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.144 3.856 3 H 0.057 0.943 4 C -0.127 4.127 5 C 0.170 3.830 6 H 0.046 0.954 7 N -0.745 5.745 8 C -0.216 4.216 9 H 0.061 0.939 10 C -0.062 4.062 11 N -0.985 5.985 12 Si 0.945 3.055 13 H -0.287 1.287 14 H -0.299 1.299 15 H -0.251 1.251 16 C -0.144 4.144 17 C 0.114 3.886 18 N -0.599 5.599 19 C 0.491 3.509 20 O -0.561 6.561 21 C 0.132 3.868 22 N -0.605 5.605 23 C 0.070 3.930 24 C 0.527 3.473 25 O -0.499 6.499 26 N -0.583 5.583 27 C 0.083 3.917 28 C 0.700 3.300 29 O -0.578 6.578 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.363 0.637 36 H 0.255 0.745 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.118 0.882 40 H 0.063 0.937 41 H 0.130 0.870 42 H 0.162 0.838 43 H 0.167 0.833 44 H 0.133 0.867 45 H 0.088 0.912 46 H 0.096 0.904 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.447 -10.775 16.773 25.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.041 3.959 3 H 0.075 0.925 4 C -0.165 4.165 5 C 0.063 3.937 6 H 0.064 0.936 7 N -0.390 5.390 8 C -0.347 4.347 9 H 0.079 0.921 10 C -0.253 4.253 11 N -0.636 5.636 12 Si 0.773 3.227 13 H -0.214 1.214 14 H -0.226 1.226 15 H -0.175 1.175 16 C -0.184 4.184 17 C -0.008 4.008 18 N -0.332 5.332 19 C 0.278 3.722 20 O -0.441 6.441 21 C 0.008 3.992 22 N -0.341 5.341 23 C -0.055 4.055 24 C 0.316 3.684 25 O -0.371 6.371 26 N -0.328 5.328 27 C -0.058 4.058 28 C 0.402 3.598 29 O -0.454 6.454 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.197 0.803 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.136 0.864 40 H 0.081 0.919 41 H 0.148 0.852 42 H 0.180 0.820 43 H 0.184 0.816 44 H 0.151 0.849 45 H 0.106 0.894 46 H 0.114 0.886 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.153 -11.022 16.656 25.687 hybrid contribution -0.100 1.164 -0.324 1.212 sum -16.252 -9.858 16.332 25.061 Atomic orbital electron populations 1.22003 0.92627 1.02237 1.00852 1.21160 0.95190 0.94954 0.84626 0.92475 1.22179 0.95429 1.01590 0.97338 1.20389 0.91463 0.85329 0.96564 0.93568 1.42838 1.12684 1.07179 1.76280 1.19005 0.89494 0.94695 1.31515 0.92148 1.25359 0.97118 0.99916 1.02900 1.69866 1.15758 1.22353 1.55652 0.85574 0.78311 0.80036 0.78743 1.21362 1.22647 1.17542 1.22350 1.01398 0.98879 0.95805 1.21818 0.78199 1.01330 0.99476 1.48238 1.08152 1.57038 1.19790 1.21598 0.86063 0.80207 0.84293 1.90742 1.18372 1.57643 1.77303 1.21516 0.86722 1.02204 0.88800 1.47113 1.33191 1.22890 1.30919 1.22769 0.96737 0.96860 0.89114 1.21187 0.85200 0.80776 0.81225 1.90811 1.48571 1.71677 1.26082 1.46374 1.31775 1.25476 1.29190 1.21994 0.90111 0.89360 1.04314 1.15965 0.79703 0.83075 0.81031 1.90958 1.73777 1.41208 1.39459 0.91763 0.92956 0.93165 0.90779 0.90098 0.80320 0.93591 0.90414 0.91501 0.86428 0.91890 0.85215 0.82033 0.81582 0.84896 0.89365 0.88555 0.89663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.26 7.61 71.98 0.55 -2.71 16 2 C 0.14 3.97 3.19 44.98 0.14 4.12 16 3 H 0.06 1.76 6.65 -2.39 -0.02 1.74 16 4 C -0.13 -3.51 5.07 30.67 0.16 -3.36 16 5 C 0.17 5.58 3.10 45.02 0.14 5.72 16 6 H 0.05 1.65 8.08 -2.38 -0.02 1.63 16 7 N -0.75 -30.76 4.11 -322.83 -1.33 -32.08 16 8 C -0.22 -11.27 10.41 84.03 0.87 -10.39 16 9 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16 10 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 11 N -0.99 -60.71 13.97 21.65 0.30 -60.40 16 12 Si 0.94 43.29 27.74 68.60 1.90 45.19 16 13 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 14 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 15 H -0.25 -10.16 6.52 99.48 0.65 -9.51 16 16 C -0.14 -3.80 5.78 30.67 0.18 -3.62 16 17 C 0.11 2.52 6.09 86.36 0.53 3.04 16 18 N -0.60 -14.27 2.97 -795.02 -2.36 -16.63 16 19 C 0.49 11.06 7.57 87.66 0.66 11.72 16 20 O -0.56 -16.14 12.00 -3.04 -0.04 -16.17 16 21 C 0.13 1.85 4.98 85.63 0.43 2.27 16 22 N -0.60 -9.80 2.51 -846.23 -2.12 -11.93 16 23 C 0.07 0.76 7.66 85.76 0.66 1.41 16 24 C 0.53 8.89 8.31 87.94 0.73 9.62 16 25 O -0.50 -10.88 17.76 -2.89 -0.05 -10.93 16 26 N -0.58 -10.75 3.00 -796.66 -2.39 -13.14 16 27 C 0.08 1.15 10.73 127.77 1.37 2.52 16 28 C 0.70 15.44 8.31 179.44 1.49 16.93 16 29 O -0.58 -16.92 17.15 -3.83 -0.07 -16.98 16 30 H 0.06 1.89 6.54 -2.39 -0.02 1.87 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.05 1.48 6.96 -2.38 -0.02 1.47 16 33 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 35 H 0.36 14.70 3.93 -92.70 -0.36 14.34 16 36 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 37 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 38 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.12 1.54 5.93 -2.39 -0.01 1.53 16 40 H 0.06 1.71 7.74 -2.39 -0.02 1.69 16 41 H 0.13 1.70 7.81 -2.39 -0.02 1.68 16 42 H 0.16 0.88 7.71 -2.38 -0.02 0.86 16 43 H 0.17 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.10 1.15 8.01 -2.39 -0.02 1.13 16 47 H 0.08 1.27 7.86 -2.39 -0.02 1.25 16 Total: -1.00 -78.13 374.98 2.79 -75.34 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: 0.57 Total: 23.44 kcal Atomic # 6 Polarization: 25.93 SS G_CDS: 8.37 Total: 34.31 kcal Atomic # 7 Polarization: -126.29 SS G_CDS: -7.90 Total: -134.19 kcal Atomic # 8 Polarization: -43.93 SS G_CDS: -0.15 Total: -44.09 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.90 Total: 45.19 kcal Total: -78.13 2.79 -75.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044816017.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.964 kcal (2) G-P(sol) polarization free energy of solvation -78.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds