Wall clock time and date at job start Tue Mar 31 2020 21:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.58942 * 2 1 4 4 C 1.53185 * 109.58595 * 239.71232 * 2 1 3 5 5 C 1.53043 * 109.31172 * 185.43645 * 4 2 1 6 6 H 1.08997 * 109.46021 * 301.35850 * 5 4 2 7 7 N 1.46509 * 109.46172 * 181.38247 * 5 4 2 8 8 C 1.36931 * 119.99686 * 154.99479 * 7 5 4 9 9 H 1.07996 * 120.00287 * 0.02562 * 8 7 5 10 10 C 1.38818 * 119.99738 * 180.02562 * 8 7 5 11 11 N 1.31618 * 119.99961 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00060 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47065 * 359.97438 * 12 10 8 14 14 H 1.48493 * 109.47133 * 119.99964 * 12 10 8 15 15 H 1.48500 * 109.46971 * 239.99846 * 12 10 8 16 16 C 1.53043 * 109.53781 * 61.36709 * 5 4 2 17 17 C 1.53189 * 109.31088 * 298.63089 * 16 5 4 18 18 N 1.46928 * 109.70289 * 120.35186 * 2 1 3 19 19 C 1.34780 * 120.62928 * 353.46591 * 18 2 1 20 20 O 1.21276 * 119.99975 * 5.06584 * 19 18 2 21 21 C 1.50702 * 119.99713 * 185.06629 * 19 18 2 22 22 N 1.46499 * 109.47054 * 179.97438 * 21 19 18 23 23 C 1.34771 * 124.18028 * 269.70335 * 22 21 19 24 24 O 1.21231 * 127.15169 * 359.97438 * 23 22 21 25 25 C 1.51586 * 105.68522 * 179.97438 * 23 22 21 26 26 N 1.47313 * 103.59338 * 0.31644 * 25 23 22 27 27 C 1.46501 * 126.68772 * 179.83930 * 26 25 23 28 28 C 1.33800 * 124.17638 * 89.99491 * 22 21 19 29 29 O 1.21537 * 123.77247 * 359.96990 * 28 22 21 30 30 H 1.08998 * 109.47114 * 183.90046 * 1 2 3 31 31 H 1.09004 * 109.47565 * 303.89810 * 1 2 3 32 32 H 1.08998 * 109.47006 * 63.89795 * 1 2 3 33 33 H 1.09001 * 109.50120 * 305.38615 * 4 2 1 34 34 H 1.08995 * 109.50182 * 65.45252 * 4 2 1 35 35 H 0.96996 * 119.99791 * 335.00354 * 7 5 4 36 36 H 0.96998 * 119.99762 * 180.02562 * 11 10 8 37 37 H 1.09000 * 109.49836 * 58.58548 * 16 5 4 38 38 H 1.09005 * 109.49907 * 178.65201 * 16 5 4 39 39 H 1.09002 * 109.58481 * 174.42426 * 17 16 5 40 40 H 1.08999 * 109.58958 * 294.84901 * 17 16 5 41 41 H 1.08999 * 109.47061 * 299.99829 * 21 19 18 42 42 H 1.08990 * 109.47262 * 60.00009 * 21 19 18 43 43 H 1.09003 * 110.76117 * 241.71391 * 25 23 22 44 44 H 1.08993 * 110.56388 * 118.82659 * 25 23 22 45 45 H 1.09007 * 109.46771 * 179.97438 * 27 26 25 46 46 H 1.08994 * 109.47223 * 299.98134 * 27 26 25 47 47 H 1.08996 * 109.46656 * 59.98905 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7279 -1.2462 5 6 3.5678 -0.8434 -1.1728 6 1 4.0045 0.1527 -1.1019 7 7 4.0655 -1.5099 -2.3788 8 6 5.3490 -1.2900 -2.8023 9 1 5.9945 -0.6257 -2.2470 10 6 5.8204 -1.9211 -3.9454 11 7 5.0335 -2.7303 -4.6224 12 14 7.5715 -1.6218 -4.5227 13 1 8.2441 -0.6776 -3.5947 14 1 8.3126 -2.9084 -4.5436 15 1 7.5497 -1.0409 -5.8892 16 6 3.9603 -1.6609 0.0601 17 6 3.4685 -0.9435 1.3211 18 7 2.0253 -0.6990 1.1937 19 6 1.1721 -1.1081 2.1534 20 8 -0.0238 -0.9830 1.9951 21 6 1.7041 -1.7208 3.4233 22 7 0.5854 -2.0787 4.2989 23 6 0.0549 -1.2551 5.2245 24 8 0.4006 -0.1217 5.4802 25 6 -1.0639 -2.0410 5.8791 26 7 -1.0257 -3.3405 5.1863 27 6 -1.9003 -4.4897 5.4325 28 6 -0.0323 -3.2654 4.2822 29 8 0.2713 -4.1747 3.5351 30 1 -0.3633 -1.0253 0.0699 31 1 -0.3634 0.5732 0.8530 32 1 -0.3633 0.4521 -0.9228 33 1 1.6049 -1.7247 -1.2920 34 1 1.7633 -0.1659 -2.1371 35 1 3.4857 -2.1067 -2.8774 36 1 5.3630 -3.1715 -5.4209 37 1 3.5036 -2.6489 0.0020 38 1 5.0448 -1.7631 0.0987 39 1 3.6576 -1.5683 2.1941 40 1 3.9920 0.0064 1.4288 41 1 2.2779 -2.6156 3.1823 42 1 2.3474 -1.0026 3.9315 43 1 -2.0244 -1.5504 5.7213 44 1 -0.8700 -2.1684 6.9441 45 1 -1.6271 -5.3044 4.7618 46 1 -1.7881 -4.8168 6.4661 47 1 -2.9363 -4.2029 5.2524 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044850597.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:45 Heat of formation + Delta-G solvation = -33.279171 kcal Electronic energy + Delta-G solvation = -30523.927079 eV Core-core repulsion = 26323.292863 eV Total energy + Delta-G solvation = -4200.634217 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.65021 -40.36079 -38.88315 -37.49413 -36.44495 -35.48615 -34.54311 -32.90904 -31.94851 -30.42197 -29.30880 -27.84234 -26.97346 -26.49079 -24.30451 -22.95760 -22.80057 -22.19063 -20.68065 -20.08855 -19.12946 -17.89958 -17.57338 -17.13644 -17.01888 -16.59105 -16.11527 -15.55738 -15.45185 -15.08321 -14.84690 -14.72148 -14.36377 -14.32659 -13.97347 -13.69755 -13.52357 -13.48939 -13.21692 -12.98396 -12.81298 -12.74888 -12.34847 -12.10828 -12.03585 -11.59817 -11.40354 -11.22017 -10.93205 -10.84548 -10.78214 -10.54179 -10.52468 -10.37511 -10.21352 -9.83806 -9.72141 -9.41355 -8.96781 -8.92689 -8.46385 -6.99144 -5.78517 -3.07918 1.34413 1.65459 2.49943 2.56057 2.69950 3.09616 3.41624 3.46964 3.49539 3.67096 4.28598 4.34895 4.56055 4.57514 4.73684 4.74571 4.86208 4.97310 4.98452 5.13346 5.15662 5.25313 5.26017 5.33801 5.46853 5.49195 5.54626 5.61519 5.80021 5.89238 6.00350 6.02447 6.12848 6.25099 6.34356 6.43858 6.47265 6.52767 6.74331 6.77035 6.88471 7.02711 7.03906 7.43495 7.67631 7.77581 8.13376 8.39509 9.50840 10.08358 10.43017 11.44053 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020955 B = 0.002517 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.854186 B =11120.413569 C =11386.933846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.148 3.852 3 H 0.072 0.928 4 C -0.135 4.135 5 C 0.179 3.821 6 H 0.048 0.952 7 N -0.724 5.724 8 C -0.239 4.239 9 H 0.071 0.929 10 C -0.014 4.014 11 N -0.931 5.931 12 Si 0.906 3.094 13 H -0.280 1.280 14 H -0.292 1.292 15 H -0.292 1.292 16 C -0.152 4.152 17 C 0.105 3.895 18 N -0.597 5.597 19 C 0.504 3.496 20 O -0.530 6.530 21 C 0.097 3.903 22 N -0.560 5.560 23 C 0.528 3.472 24 O -0.468 6.468 25 C 0.067 3.933 26 N -0.630 5.630 27 C 0.119 3.881 28 C 0.704 3.296 29 O -0.535 6.535 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.043 0.957 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.091 0.909 46 H 0.068 0.932 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.087 1.259 24.651 27.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.045 3.955 3 H 0.090 0.910 4 C -0.174 4.174 5 C 0.069 3.931 6 H 0.066 0.934 7 N -0.364 5.364 8 C -0.370 4.370 9 H 0.089 0.911 10 C -0.210 4.210 11 N -0.580 5.580 12 Si 0.737 3.263 13 H -0.206 1.206 14 H -0.219 1.219 15 H -0.219 1.219 16 C -0.193 4.193 17 C -0.018 4.018 18 N -0.331 5.331 19 C 0.290 3.710 20 O -0.408 6.408 21 C -0.028 4.028 22 N -0.305 5.305 23 C 0.315 3.685 24 O -0.338 6.338 25 C -0.059 4.059 26 N -0.370 5.370 27 C -0.021 4.021 28 C 0.407 3.593 29 O -0.408 6.408 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.218 0.782 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.109 0.891 46 H 0.086 0.914 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.210 1.409 24.216 27.621 hybrid contribution 0.959 -0.153 -0.603 1.143 sum -12.252 1.257 23.613 26.632 Atomic orbital electron populations 1.22173 0.92877 1.03608 1.00375 1.21342 0.95399 0.95017 0.83699 0.90955 1.22302 0.97584 1.01062 0.96466 1.20157 0.90873 0.94967 0.87107 0.93394 1.42440 1.13047 1.54316 1.26585 1.19268 0.89149 1.22193 1.06439 0.91100 1.24762 0.98170 0.99842 0.98195 1.69675 1.35320 1.33541 1.19422 0.86135 0.84490 0.77275 0.78383 1.20554 1.21893 1.21893 1.22694 1.01852 1.00174 0.94602 1.21937 0.79289 1.00801 0.99807 1.48164 1.07660 1.57189 1.20119 1.20552 0.86962 0.78678 0.84804 1.90759 1.15368 1.55483 1.79144 1.21611 0.87475 1.03748 0.89954 1.45874 1.33765 1.15278 1.35624 1.20839 0.82956 0.85607 0.79098 1.90825 1.63567 1.15224 1.64172 1.22451 1.00160 0.83884 0.99387 1.47402 1.35448 1.15252 1.38930 1.21544 0.92375 0.85981 1.02234 1.15775 0.80055 0.82245 0.81264 1.91014 1.67874 1.39432 1.42451 0.91178 0.91619 0.93773 0.91716 0.90564 0.78232 0.93529 0.91980 0.90398 0.90668 0.90960 0.85591 0.85836 0.85926 0.86015 0.89066 0.91360 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 7.60 37.16 0.28 -1.70 16 2 C 0.15 2.18 3.48 -67.60 -0.24 1.95 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.14 -2.29 4.84 -26.61 -0.13 -2.41 16 5 C 0.18 3.41 2.73 -67.88 -0.19 3.22 16 6 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 7 N -0.72 -17.76 5.12 -53.38 -0.27 -18.04 16 8 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 9 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 10 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 11 N -0.93 -28.06 13.06 55.49 0.72 -27.34 16 12 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 15 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 16 C -0.15 -2.50 5.66 -26.61 -0.15 -2.65 16 17 C 0.10 1.30 6.33 -3.71 -0.02 1.27 16 18 N -0.60 -8.32 2.97 -165.22 -0.49 -8.81 16 19 C 0.50 7.25 7.68 -10.98 -0.08 7.16 16 20 O -0.53 -8.96 11.85 5.56 0.07 -8.90 16 21 C 0.10 1.10 4.58 -5.19 -0.02 1.07 16 22 N -0.56 -6.46 2.09 -122.02 -0.26 -6.72 16 23 C 0.53 5.36 8.32 -10.55 -0.09 5.27 16 24 O -0.47 -5.91 17.75 5.60 0.10 -5.81 16 25 C 0.07 0.40 7.66 -4.31 -0.03 0.37 16 26 N -0.63 -5.15 3.42 -187.94 -0.64 -5.79 16 27 C 0.12 0.60 11.33 59.85 0.68 1.28 16 28 C 0.70 8.63 8.31 -88.01 -0.73 7.90 16 29 O -0.54 -8.50 16.92 5.33 0.09 -8.41 16 30 H 0.07 1.19 6.74 -51.93 -0.35 0.84 16 31 H 0.06 1.02 6.77 -51.93 -0.35 0.67 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.38 10.22 7.80 -40.82 -0.32 9.90 16 36 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.07 0.73 5.96 -51.93 -0.31 0.42 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.13 1.32 7.20 -51.93 -0.37 0.95 16 42 H 0.12 1.10 7.96 -51.93 -0.41 0.69 16 43 H 0.12 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.12 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.09 0.59 7.67 -51.92 -0.40 0.19 16 46 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 47 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 LS Contribution 381.88 15.07 5.75 5.75 Total: -1.00 -36.41 381.88 -8.05 -44.46 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -7.13 Total: 6.86 kcal Atomic # 6 Polarization: 16.58 SS G_CDS: -0.97 Total: 15.61 kcal Atomic # 7 Polarization: -65.76 SS G_CDS: -0.94 Total: -66.69 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: 0.26 Total: -23.12 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.41 -8.05 -44.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044850597.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.185 kcal (2) G-P(sol) polarization free energy of solvation -36.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds