Wall clock time and date at job start Tue Mar 31 2020 21:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.58942 * 2 1 4 4 C 1.53185 * 109.58595 * 239.71232 * 2 1 3 5 5 C 1.53043 * 109.31172 * 185.43645 * 4 2 1 6 6 H 1.08997 * 109.46021 * 301.35850 * 5 4 2 7 7 N 1.46509 * 109.46172 * 181.38247 * 5 4 2 8 8 C 1.36931 * 119.99686 * 154.99479 * 7 5 4 9 9 H 1.07996 * 120.00287 * 0.02562 * 8 7 5 10 10 C 1.38818 * 119.99738 * 180.02562 * 8 7 5 11 11 N 1.31618 * 119.99961 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00060 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47065 * 359.97438 * 12 10 8 14 14 H 1.48493 * 109.47133 * 119.99964 * 12 10 8 15 15 H 1.48500 * 109.46971 * 239.99846 * 12 10 8 16 16 C 1.53043 * 109.53781 * 61.36709 * 5 4 2 17 17 C 1.53189 * 109.31088 * 298.63089 * 16 5 4 18 18 N 1.46928 * 109.70289 * 120.35186 * 2 1 3 19 19 C 1.34780 * 120.62928 * 353.46591 * 18 2 1 20 20 O 1.21276 * 119.99975 * 5.06584 * 19 18 2 21 21 C 1.50702 * 119.99713 * 185.06629 * 19 18 2 22 22 N 1.46499 * 109.47054 * 179.97438 * 21 19 18 23 23 C 1.34771 * 124.18028 * 269.70335 * 22 21 19 24 24 O 1.21231 * 127.15169 * 359.97438 * 23 22 21 25 25 C 1.51586 * 105.68522 * 179.97438 * 23 22 21 26 26 N 1.47313 * 103.59338 * 0.31644 * 25 23 22 27 27 C 1.46501 * 126.68772 * 179.83930 * 26 25 23 28 28 C 1.33800 * 124.17638 * 89.99491 * 22 21 19 29 29 O 1.21537 * 123.77247 * 359.96990 * 28 22 21 30 30 H 1.08998 * 109.47114 * 183.90046 * 1 2 3 31 31 H 1.09004 * 109.47565 * 303.89810 * 1 2 3 32 32 H 1.08998 * 109.47006 * 63.89795 * 1 2 3 33 33 H 1.09001 * 109.50120 * 305.38615 * 4 2 1 34 34 H 1.08995 * 109.50182 * 65.45252 * 4 2 1 35 35 H 0.96996 * 119.99791 * 335.00354 * 7 5 4 36 36 H 0.96998 * 119.99762 * 180.02562 * 11 10 8 37 37 H 1.09000 * 109.49836 * 58.58548 * 16 5 4 38 38 H 1.09005 * 109.49907 * 178.65201 * 16 5 4 39 39 H 1.09002 * 109.58481 * 174.42426 * 17 16 5 40 40 H 1.08999 * 109.58958 * 294.84901 * 17 16 5 41 41 H 1.08999 * 109.47061 * 299.99829 * 21 19 18 42 42 H 1.08990 * 109.47262 * 60.00009 * 21 19 18 43 43 H 1.09003 * 110.76117 * 241.71391 * 25 23 22 44 44 H 1.08993 * 110.56388 * 118.82659 * 25 23 22 45 45 H 1.09007 * 109.46771 * 179.97438 * 27 26 25 46 46 H 1.08994 * 109.47223 * 299.98134 * 27 26 25 47 47 H 1.08996 * 109.46656 * 59.98905 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7279 -1.2462 5 6 3.5678 -0.8434 -1.1728 6 1 4.0045 0.1527 -1.1019 7 7 4.0655 -1.5099 -2.3788 8 6 5.3490 -1.2900 -2.8023 9 1 5.9945 -0.6257 -2.2470 10 6 5.8204 -1.9211 -3.9454 11 7 5.0335 -2.7303 -4.6224 12 14 7.5715 -1.6218 -4.5227 13 1 8.2441 -0.6776 -3.5947 14 1 8.3126 -2.9084 -4.5436 15 1 7.5497 -1.0409 -5.8892 16 6 3.9603 -1.6609 0.0601 17 6 3.4685 -0.9435 1.3211 18 7 2.0253 -0.6990 1.1937 19 6 1.1721 -1.1081 2.1534 20 8 -0.0238 -0.9830 1.9951 21 6 1.7041 -1.7208 3.4233 22 7 0.5854 -2.0787 4.2989 23 6 0.0549 -1.2551 5.2245 24 8 0.4006 -0.1217 5.4802 25 6 -1.0639 -2.0410 5.8791 26 7 -1.0257 -3.3405 5.1863 27 6 -1.9003 -4.4897 5.4325 28 6 -0.0323 -3.2654 4.2822 29 8 0.2713 -4.1747 3.5351 30 1 -0.3633 -1.0253 0.0699 31 1 -0.3634 0.5732 0.8530 32 1 -0.3633 0.4521 -0.9228 33 1 1.6049 -1.7247 -1.2920 34 1 1.7633 -0.1659 -2.1371 35 1 3.4857 -2.1067 -2.8774 36 1 5.3630 -3.1715 -5.4209 37 1 3.5036 -2.6489 0.0020 38 1 5.0448 -1.7631 0.0987 39 1 3.6576 -1.5683 2.1941 40 1 3.9920 0.0064 1.4288 41 1 2.2779 -2.6156 3.1823 42 1 2.3474 -1.0026 3.9315 43 1 -2.0244 -1.5504 5.7213 44 1 -0.8700 -2.1684 6.9441 45 1 -1.6271 -5.3044 4.7618 46 1 -1.7881 -4.8168 6.4661 47 1 -2.9363 -4.2029 5.2524 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044850597.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:44 Heat of formation + Delta-G solvation = -59.237419 kcal Electronic energy + Delta-G solvation = -30525.052713 eV Core-core repulsion = 26323.292863 eV Total energy + Delta-G solvation = -4201.759851 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.44335 -41.51616 -39.74112 -38.82010 -37.30685 -36.36952 -36.14534 -34.14330 -33.68533 -31.35043 -30.78476 -28.77765 -28.16883 -27.17220 -26.03162 -24.47588 -23.60352 -23.27947 -21.82635 -21.30397 -20.27318 -19.15492 -18.70261 -18.43656 -17.82275 -17.54738 -17.15154 -16.74427 -16.56687 -16.42356 -15.87037 -15.56143 -15.47104 -15.46144 -15.17781 -15.06538 -14.76860 -14.71167 -14.33917 -14.25353 -13.56317 -13.43549 -13.38942 -13.28145 -13.20693 -13.09851 -12.90741 -12.67482 -12.63671 -12.12661 -12.11177 -12.06124 -11.98016 -11.71285 -11.46214 -11.38714 -11.29274 -10.90928 -10.17282 -9.94675 -9.66107 -9.01600 -7.93036 -5.22126 0.58254 0.90598 1.43143 1.48402 1.48858 1.58819 1.70566 2.00434 2.10558 2.56788 3.01398 3.32479 3.40611 3.62830 3.71770 3.82109 3.98145 4.05693 4.06745 4.12722 4.20893 4.24761 4.28079 4.32407 4.37237 4.55076 4.59215 4.67900 4.69151 4.75462 4.79287 4.89266 4.94654 4.98665 5.04813 5.10068 5.20671 5.38387 5.38840 5.49642 5.54388 5.64792 6.00675 6.26612 6.28397 6.33776 6.92962 7.02909 7.34126 8.09525 8.32663 9.31024 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020955 B = 0.002517 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.854186 B =11120.413569 C =11386.933846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.152 3.848 3 H 0.092 0.908 4 C -0.123 4.123 5 C 0.174 3.826 6 H 0.054 0.946 7 N -0.739 5.739 8 C -0.231 4.231 9 H 0.082 0.918 10 C -0.081 4.081 11 N -0.974 5.974 12 Si 0.972 3.028 13 H -0.261 1.261 14 H -0.297 1.297 15 H -0.297 1.297 16 C -0.142 4.142 17 C 0.111 3.889 18 N -0.600 5.600 19 C 0.498 3.502 20 O -0.560 6.560 21 C 0.096 3.904 22 N -0.567 5.567 23 C 0.522 3.478 24 O -0.497 6.497 25 C 0.076 3.924 26 N -0.622 5.622 27 C 0.113 3.887 28 C 0.693 3.307 29 O -0.585 6.585 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.369 0.631 36 H 0.249 0.751 37 H 0.040 0.960 38 H 0.072 0.928 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.132 0.868 42 H 0.151 0.849 43 H 0.149 0.851 44 H 0.165 0.835 45 H 0.070 0.930 46 H 0.100 0.900 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.086 2.550 27.826 30.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.049 3.951 3 H 0.110 0.890 4 C -0.162 4.162 5 C 0.065 3.935 6 H 0.072 0.928 7 N -0.378 5.378 8 C -0.363 4.363 9 H 0.100 0.900 10 C -0.273 4.273 11 N -0.625 5.625 12 Si 0.801 3.199 13 H -0.185 1.185 14 H -0.224 1.224 15 H -0.225 1.225 16 C -0.183 4.183 17 C -0.011 4.011 18 N -0.333 5.333 19 C 0.285 3.715 20 O -0.440 6.440 21 C -0.029 4.029 22 N -0.312 5.312 23 C 0.311 3.689 24 O -0.369 6.369 25 C -0.048 4.048 26 N -0.361 5.361 27 C -0.027 4.027 28 C 0.395 3.605 29 O -0.462 6.462 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.200 0.800 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.090 0.910 39 H 0.126 0.874 40 H 0.115 0.885 41 H 0.150 0.850 42 H 0.169 0.831 43 H 0.166 0.834 44 H 0.182 0.818 45 H 0.089 0.911 46 H 0.119 0.881 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.232 2.739 27.491 30.632 hybrid contribution 0.850 -0.536 -1.519 1.821 sum -12.383 2.203 25.971 28.857 Atomic orbital electron populations 1.21993 0.92992 1.01974 1.00714 1.21277 0.95200 0.95617 0.83015 0.89030 1.22148 0.96143 1.00196 0.97755 1.20419 0.91934 0.94970 0.86141 0.92807 1.42690 1.12310 1.54474 1.28315 1.19684 0.90036 1.20811 1.05786 0.90002 1.25585 1.02106 1.00579 0.99011 1.69843 1.37210 1.35421 1.20029 0.85085 0.80050 0.77030 0.77696 1.18524 1.22426 1.22473 1.22467 1.01352 0.99092 0.95421 1.22014 0.78286 1.02154 0.98646 1.48226 1.08331 1.56962 1.19766 1.21121 0.86641 0.78068 0.85659 1.90742 1.16684 1.56588 1.79939 1.21694 0.87949 1.04379 0.88855 1.46026 1.33871 1.15485 1.35797 1.21524 0.83422 0.85312 0.78600 1.90810 1.64657 1.16382 1.65017 1.22733 0.99437 0.81947 1.00727 1.47668 1.34113 1.16690 1.37607 1.21820 0.92661 0.84576 1.03616 1.16082 0.80879 0.81894 0.81627 1.90973 1.69574 1.40978 1.44681 0.93685 0.91974 0.92702 0.93770 0.91108 0.80021 0.94238 0.94065 0.90963 0.87358 0.88495 0.84989 0.83126 0.83404 0.81778 0.91149 0.88139 0.89311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.55 7.60 71.98 0.55 -3.00 16 2 C 0.15 4.35 3.48 44.97 0.16 4.50 16 3 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 4 C -0.12 -4.22 4.84 30.67 0.15 -4.07 16 5 C 0.17 6.55 2.73 45.02 0.12 6.68 16 6 H 0.05 1.99 8.08 -2.39 -0.02 1.97 16 7 N -0.74 -36.92 5.12 -322.79 -1.65 -38.57 16 8 C -0.23 -12.54 9.93 84.04 0.83 -11.70 16 9 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 10 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 11 N -0.97 -60.34 13.06 21.65 0.28 -60.05 16 12 Si 0.97 45.89 29.55 68.60 2.03 47.91 16 13 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 14 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 15 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 16 C -0.14 -4.58 5.66 30.67 0.17 -4.40 16 17 C 0.11 2.49 6.33 86.36 0.55 3.03 16 18 N -0.60 -15.89 2.97 -795.03 -2.36 -18.26 16 19 C 0.50 13.87 7.68 87.66 0.67 14.54 16 20 O -0.56 -18.90 11.85 -3.02 -0.04 -18.94 16 21 C 0.10 2.03 4.58 85.63 0.39 2.42 16 22 N -0.57 -12.35 2.09 -777.21 -1.63 -13.97 16 23 C 0.52 9.48 8.32 87.94 0.73 10.21 16 24 O -0.50 -11.59 17.75 -2.88 -0.05 -11.64 16 25 C 0.08 0.63 7.66 85.76 0.66 1.29 16 26 N -0.62 -8.75 3.42 -866.95 -2.96 -11.71 16 27 C 0.11 0.87 11.33 127.77 1.45 2.32 16 28 C 0.69 16.46 8.31 179.44 1.49 17.96 16 29 O -0.59 -19.00 16.92 -3.83 -0.06 -19.07 16 30 H 0.04 1.56 6.74 -2.39 -0.02 1.54 16 31 H 0.06 1.90 6.77 -2.38 -0.02 1.88 16 32 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.04 1.67 8.14 -2.39 -0.02 1.66 16 34 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.37 20.40 7.80 -92.71 -0.72 19.67 16 36 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 37 H 0.04 1.48 8.14 -2.39 -0.02 1.47 16 38 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 39 H 0.11 1.76 5.96 -2.39 -0.01 1.75 16 40 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.13 2.61 7.20 -2.39 -0.02 2.59 16 42 H 0.15 2.28 7.96 -2.39 -0.02 2.27 16 43 H 0.15 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.16 0.09 8.14 -2.39 -0.02 0.07 16 45 H 0.07 0.88 7.67 -2.38 -0.02 0.86 16 46 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 47 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 Total: -1.00 -82.89 381.88 2.21 -80.68 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: 0.27 Total: 28.01 kcal Atomic # 6 Polarization: 27.21 SS G_CDS: 8.39 Total: 35.60 kcal Atomic # 7 Polarization: -134.24 SS G_CDS: -8.32 Total: -142.57 kcal Atomic # 8 Polarization: -49.49 SS G_CDS: -0.15 Total: -49.64 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Total: -82.89 2.21 -80.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044850597.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.447 kcal (2) G-P(sol) polarization free energy of solvation -82.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds