Wall clock time and date at job start Tue Mar 31 2020 21:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09007 * 109.69761 * 2 1 4 4 C 1.53625 * 109.66641 * 120.58869 * 2 1 3 5 5 C 1.53039 * 109.24135 * 174.55026 * 4 2 1 6 6 H 1.09002 * 109.44881 * 58.52795 * 5 4 2 7 7 N 1.46502 * 109.46001 * 178.49303 * 5 4 2 8 8 C 1.36937 * 119.99811 * 205.07360 * 7 5 4 9 9 H 1.08001 * 120.00414 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99821 * 179.97438 * 8 7 5 11 11 N 1.31625 * 120.00125 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00166 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46945 * 59.99858 * 12 10 8 14 14 H 1.48492 * 109.47261 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47113 * 300.00376 * 12 10 8 16 16 C 1.53041 * 109.53722 * 298.51396 * 5 4 2 17 17 C 1.53190 * 109.31621 * 61.36614 * 16 5 4 18 18 N 1.46924 * 109.58724 * 239.64329 * 2 1 3 19 19 C 1.34780 * 120.62695 * 6.62757 * 18 2 1 20 20 O 1.21281 * 120.00094 * 354.63559 * 19 18 2 21 21 C 1.50704 * 119.99629 * 174.63970 * 19 18 2 22 22 N 1.46498 * 109.46990 * 179.97438 * 21 19 18 23 23 C 1.34771 * 124.17771 * 270.04209 * 22 21 19 24 24 O 1.21232 * 127.15679 * 359.92344 * 23 22 21 25 25 C 1.51581 * 105.68132 * 179.97438 * 23 22 21 26 26 N 1.47311 * 103.59800 * 359.97438 * 25 23 22 27 27 C 1.46503 * 126.69034 * 180.02562 * 26 25 23 28 28 C 1.33797 * 124.17520 * 90.00011 * 22 21 19 29 29 O 1.21537 * 123.77076 * 359.76970 * 28 22 21 30 30 H 1.08996 * 109.46777 * 176.12703 * 1 2 3 31 31 H 1.08996 * 109.47054 * 296.12626 * 1 2 3 32 32 H 1.08996 * 109.47304 * 56.12644 * 1 2 3 33 33 H 1.09000 * 109.63196 * 54.55634 * 4 2 1 34 34 H 1.09003 * 109.45842 * 294.43763 * 4 2 1 35 35 H 0.96998 * 119.99886 * 25.06124 * 7 5 4 36 36 H 0.96996 * 119.99666 * 179.97438 * 11 10 8 37 37 H 1.08996 * 109.49373 * 301.41063 * 16 5 4 38 38 H 1.09000 * 109.49643 * 181.32030 * 16 5 4 39 39 H 1.08997 * 109.58901 * 185.57785 * 17 16 5 40 40 H 1.08998 * 109.58497 * 65.14996 * 17 16 5 41 41 H 1.08998 * 109.47143 * 59.99568 * 21 19 18 42 42 H 1.08999 * 109.46900 * 299.99465 * 21 19 18 43 43 H 1.09002 * 110.60001 * 118.52600 * 25 23 22 44 44 H 1.09003 * 110.59851 * 241.31184 * 25 23 22 45 45 H 1.09002 * 109.46509 * 179.97438 * 27 26 25 46 46 H 1.09001 * 109.46919 * 299.98405 * 27 26 25 47 47 H 1.08996 * 109.46895 * 59.98856 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0471 -0.7362 1.2453 5 6 3.5713 -0.8496 1.1676 6 1 4.0064 0.1474 1.0989 7 7 4.0728 -1.5192 2.3703 8 6 5.3567 -1.2980 2.7920 9 1 5.9997 -0.6304 2.2378 10 6 5.8317 -1.9320 3.9318 11 7 5.0479 -2.7454 4.6076 12 14 7.5834 -1.6310 4.5068 13 1 7.7678 -0.1862 4.7966 14 1 7.8426 -2.4193 5.7382 15 1 8.5320 -2.0473 3.4429 16 6 3.9616 -1.6626 -0.0689 17 6 3.4657 -0.9419 -1.3264 18 7 2.0226 -0.6996 -1.1944 19 6 1.1674 -1.1062 -2.1535 20 8 -0.0282 -0.9834 -1.9917 21 6 1.6970 -1.7135 -3.4271 22 7 0.5765 -2.0707 -4.3006 23 6 -0.0437 -3.2671 -4.2856 24 8 0.2116 -4.2154 -3.5747 25 6 -1.1259 -3.1809 -5.3434 26 7 -0.9762 -1.8179 -5.8817 27 6 -1.7795 -1.2020 -6.9409 28 6 0.0419 -1.2490 -5.2112 29 8 0.4293 -0.1138 -5.4070 30 1 -0.3633 -1.0253 -0.0694 31 1 -0.3633 0.4525 0.9226 32 1 -0.3634 0.5728 -0.8532 33 1 1.6097 -1.7336 1.2891 34 1 1.7689 -0.1775 2.1390 35 1 3.4953 -2.1190 2.8679 36 1 5.3800 -3.1886 5.4038 37 1 3.5063 -2.6513 -0.0127 38 1 5.0461 -1.7629 -0.1108 39 1 3.6533 -1.5636 -2.2018 40 1 3.9878 0.0090 -1.4324 41 1 2.2727 -2.6084 -3.1908 42 1 2.3380 -0.9925 -3.9343 43 1 -0.9586 -3.9226 -6.1245 44 1 -2.1110 -3.3127 -4.8958 45 1 -1.4289 -0.1852 -7.1179 46 1 -1.6815 -1.7849 -7.8567 47 1 -2.8256 -1.1775 -6.6358 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044850599.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:53 Heat of formation + Delta-G solvation = -32.931816 kcal Electronic energy + Delta-G solvation = -30499.608019 eV Core-core repulsion = 26298.988865 eV Total energy + Delta-G solvation = -4200.619154 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.65124 -40.35619 -38.87192 -37.48560 -36.45755 -35.48747 -34.54342 -32.88907 -31.95094 -30.42581 -29.30951 -27.83873 -26.97690 -26.49702 -24.29909 -22.95612 -22.81592 -22.17030 -20.68347 -20.09238 -19.12984 -17.89771 -17.58006 -17.13156 -17.01697 -16.57896 -16.07906 -15.72733 -15.29290 -15.11662 -14.84341 -14.71834 -14.37684 -14.32683 -13.97897 -13.71179 -13.51964 -13.47003 -13.21898 -12.97814 -12.84014 -12.75443 -12.35030 -12.10741 -12.03454 -11.59704 -11.39771 -11.23288 -10.90791 -10.84400 -10.78730 -10.54022 -10.51463 -10.37275 -10.27439 -9.85531 -9.71523 -9.43257 -8.95877 -8.91951 -8.45836 -6.99561 -5.78447 -3.08007 1.36726 1.64974 2.50572 2.54730 2.69544 3.09737 3.42156 3.46723 3.47943 3.67862 4.28649 4.34949 4.55928 4.58507 4.72284 4.76387 4.87148 4.95795 4.97269 5.13322 5.15442 5.21818 5.25770 5.33694 5.46508 5.47421 5.54715 5.61145 5.80143 5.89258 6.00401 6.00646 6.12904 6.25094 6.34024 6.43514 6.46914 6.52650 6.74147 6.76116 6.88226 7.03083 7.05889 7.43683 7.66502 7.75199 8.13654 8.39629 9.50738 10.08155 10.42826 11.43951 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.024048 B = 0.002454 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.067815 B =11409.148728 C =11612.184575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.148 3.852 3 H 0.073 0.927 4 C -0.134 4.134 5 C 0.179 3.821 6 H 0.048 0.952 7 N -0.724 5.724 8 C -0.241 4.241 9 H 0.070 0.930 10 C -0.013 4.013 11 N -0.932 5.932 12 Si 0.907 3.093 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 C -0.152 4.152 17 C 0.105 3.895 18 N -0.598 5.598 19 C 0.504 3.496 20 O -0.530 6.530 21 C 0.097 3.903 22 N -0.561 5.561 23 C 0.526 3.474 24 O -0.463 6.463 25 C 0.067 3.933 26 N -0.630 5.630 27 C 0.120 3.880 28 C 0.706 3.294 29 O -0.541 6.541 30 H 0.069 0.931 31 H 0.043 0.957 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.384 0.616 36 H 0.256 0.744 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.090 0.910 46 H 0.068 0.932 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.132 1.493 -24.668 27.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.045 3.955 3 H 0.091 0.909 4 C -0.173 4.173 5 C 0.069 3.931 6 H 0.066 0.934 7 N -0.364 5.364 8 C -0.372 4.372 9 H 0.088 0.912 10 C -0.209 4.209 11 N -0.580 5.580 12 Si 0.738 3.262 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 C -0.193 4.193 17 C -0.018 4.018 18 N -0.331 5.331 19 C 0.290 3.710 20 O -0.408 6.408 21 C -0.028 4.028 22 N -0.306 5.306 23 C 0.313 3.687 24 O -0.331 6.331 25 C -0.059 4.059 26 N -0.370 5.370 27 C -0.021 4.021 28 C 0.409 3.591 29 O -0.414 6.414 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.218 0.782 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.109 0.891 46 H 0.086 0.914 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.255 1.782 -24.286 27.725 hybrid contribution 0.970 -0.211 0.615 1.168 sum -12.285 1.571 -23.671 26.715 Atomic orbital electron populations 1.22175 0.92868 1.03580 1.00394 1.21448 0.95409 0.95013 0.83619 0.90907 1.22376 0.97539 1.00954 0.96475 1.20157 0.90874 0.94980 0.87117 0.93386 1.42424 1.13034 1.53989 1.26919 1.19180 0.89183 1.22126 1.06718 0.91206 1.24759 0.98173 0.99782 0.98193 1.69656 1.35520 1.33198 1.19629 0.86277 0.84563 0.77461 0.77916 1.21272 1.21725 1.21271 1.22692 1.01825 1.00110 0.94662 1.21936 0.79311 1.00849 0.99740 1.48164 1.07629 1.57247 1.20105 1.20557 0.86955 0.78756 0.84739 1.90761 1.15425 1.55469 1.79108 1.21611 0.87497 1.03833 0.89827 1.45879 1.33689 1.15592 1.35453 1.20851 0.82479 0.81828 0.83560 1.90858 1.65905 1.34529 1.41850 1.22460 1.00593 0.86058 0.96778 1.47398 1.34945 1.14566 1.40070 1.21538 0.94111 0.99238 0.87228 1.15750 0.80253 0.84132 0.78991 1.90980 1.65343 1.15703 1.69369 0.91199 0.93802 0.91569 0.91724 0.90599 0.78234 0.93426 0.92026 0.90403 0.90690 0.90947 0.85759 0.85694 0.85970 0.85892 0.89146 0.91364 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 7.60 37.16 0.28 -1.71 16 2 C 0.15 2.18 3.51 -67.37 -0.24 1.95 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.13 -2.26 4.86 -26.39 -0.13 -2.39 16 5 C 0.18 3.39 2.73 -67.89 -0.19 3.21 16 6 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 7 N -0.72 -17.71 5.12 -53.38 -0.27 -17.98 16 8 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 9 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 10 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 11 N -0.93 -27.99 13.06 55.49 0.72 -27.27 16 12 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 14 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 15 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 16 C -0.15 -2.47 5.66 -26.61 -0.15 -2.62 16 17 C 0.10 1.30 6.33 -3.71 -0.02 1.27 16 18 N -0.60 -8.34 2.97 -164.96 -0.49 -8.83 16 19 C 0.50 7.25 7.67 -10.98 -0.08 7.17 16 20 O -0.53 -8.97 11.83 5.56 0.07 -8.91 16 21 C 0.10 1.10 4.58 -5.19 -0.02 1.07 16 22 N -0.56 -6.47 2.09 -122.02 -0.26 -6.73 16 23 C 0.53 5.61 8.32 -10.55 -0.09 5.52 16 24 O -0.46 -6.35 17.76 5.60 0.10 -6.25 16 25 C 0.07 0.41 7.66 -4.32 -0.03 0.38 16 26 N -0.63 -4.97 3.42 -187.94 -0.64 -5.61 16 27 C 0.12 0.55 11.33 59.85 0.68 1.23 16 28 C 0.71 8.30 8.31 -88.01 -0.73 7.57 16 29 O -0.54 -8.00 16.92 5.33 0.09 -7.91 16 30 H 0.07 1.17 6.73 -51.93 -0.35 0.82 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.04 6.77 -51.93 -0.35 0.69 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.38 10.17 7.80 -40.82 -0.32 9.86 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 39 H 0.07 0.72 5.96 -51.93 -0.31 0.41 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.12 1.22 7.34 -51.93 -0.38 0.84 16 42 H 0.13 1.20 7.83 -51.93 -0.41 0.79 16 43 H 0.12 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.09 0.52 7.67 -51.93 -0.40 0.12 16 46 H 0.07 0.16 8.14 -51.93 -0.42 -0.27 16 47 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 LS Contribution 381.91 15.07 5.76 5.76 Total: -1.00 -36.24 381.91 -8.05 -44.29 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -7.13 Total: 6.83 kcal Atomic # 6 Polarization: 16.48 SS G_CDS: -0.97 Total: 15.51 kcal Atomic # 7 Polarization: -65.48 SS G_CDS: -0.94 Total: -66.41 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: 0.26 Total: -23.07 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.24 -8.05 -44.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044850599.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.359 kcal (2) G-P(sol) polarization free energy of solvation -36.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds