Wall clock time and date at job start Tue Mar 31 2020 21:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09007 * 109.69761 * 2 1 4 4 C 1.53625 * 109.66641 * 120.58869 * 2 1 3 5 5 C 1.53039 * 109.24135 * 174.55026 * 4 2 1 6 6 H 1.09002 * 109.44881 * 58.52795 * 5 4 2 7 7 N 1.46502 * 109.46001 * 178.49303 * 5 4 2 8 8 C 1.36937 * 119.99811 * 205.07360 * 7 5 4 9 9 H 1.08001 * 120.00414 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99821 * 179.97438 * 8 7 5 11 11 N 1.31625 * 120.00125 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00166 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46945 * 59.99858 * 12 10 8 14 14 H 1.48492 * 109.47261 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47113 * 300.00376 * 12 10 8 16 16 C 1.53041 * 109.53722 * 298.51396 * 5 4 2 17 17 C 1.53190 * 109.31621 * 61.36614 * 16 5 4 18 18 N 1.46924 * 109.58724 * 239.64329 * 2 1 3 19 19 C 1.34780 * 120.62695 * 6.62757 * 18 2 1 20 20 O 1.21281 * 120.00094 * 354.63559 * 19 18 2 21 21 C 1.50704 * 119.99629 * 174.63970 * 19 18 2 22 22 N 1.46498 * 109.46990 * 179.97438 * 21 19 18 23 23 C 1.34771 * 124.17771 * 270.04209 * 22 21 19 24 24 O 1.21232 * 127.15679 * 359.92344 * 23 22 21 25 25 C 1.51581 * 105.68132 * 179.97438 * 23 22 21 26 26 N 1.47311 * 103.59800 * 359.97438 * 25 23 22 27 27 C 1.46503 * 126.69034 * 180.02562 * 26 25 23 28 28 C 1.33797 * 124.17520 * 90.00011 * 22 21 19 29 29 O 1.21537 * 123.77076 * 359.76970 * 28 22 21 30 30 H 1.08996 * 109.46777 * 176.12703 * 1 2 3 31 31 H 1.08996 * 109.47054 * 296.12626 * 1 2 3 32 32 H 1.08996 * 109.47304 * 56.12644 * 1 2 3 33 33 H 1.09000 * 109.63196 * 54.55634 * 4 2 1 34 34 H 1.09003 * 109.45842 * 294.43763 * 4 2 1 35 35 H 0.96998 * 119.99886 * 25.06124 * 7 5 4 36 36 H 0.96996 * 119.99666 * 179.97438 * 11 10 8 37 37 H 1.08996 * 109.49373 * 301.41063 * 16 5 4 38 38 H 1.09000 * 109.49643 * 181.32030 * 16 5 4 39 39 H 1.08997 * 109.58901 * 185.57785 * 17 16 5 40 40 H 1.08998 * 109.58497 * 65.14996 * 17 16 5 41 41 H 1.08998 * 109.47143 * 59.99568 * 21 19 18 42 42 H 1.08999 * 109.46900 * 299.99465 * 21 19 18 43 43 H 1.09002 * 110.60001 * 118.52600 * 25 23 22 44 44 H 1.09003 * 110.59851 * 241.31184 * 25 23 22 45 45 H 1.09002 * 109.46509 * 179.97438 * 27 26 25 46 46 H 1.09001 * 109.46919 * 299.98405 * 27 26 25 47 47 H 1.08996 * 109.46895 * 59.98856 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0471 -0.7362 1.2453 5 6 3.5713 -0.8496 1.1676 6 1 4.0064 0.1474 1.0989 7 7 4.0728 -1.5192 2.3703 8 6 5.3567 -1.2980 2.7920 9 1 5.9997 -0.6304 2.2378 10 6 5.8317 -1.9320 3.9318 11 7 5.0479 -2.7454 4.6076 12 14 7.5834 -1.6310 4.5068 13 1 7.7678 -0.1862 4.7966 14 1 7.8426 -2.4193 5.7382 15 1 8.5320 -2.0473 3.4429 16 6 3.9616 -1.6626 -0.0689 17 6 3.4657 -0.9419 -1.3264 18 7 2.0226 -0.6996 -1.1944 19 6 1.1674 -1.1062 -2.1535 20 8 -0.0282 -0.9834 -1.9917 21 6 1.6970 -1.7135 -3.4271 22 7 0.5765 -2.0707 -4.3006 23 6 -0.0437 -3.2671 -4.2856 24 8 0.2116 -4.2154 -3.5747 25 6 -1.1259 -3.1809 -5.3434 26 7 -0.9762 -1.8179 -5.8817 27 6 -1.7795 -1.2020 -6.9409 28 6 0.0419 -1.2490 -5.2112 29 8 0.4293 -0.1138 -5.4070 30 1 -0.3633 -1.0253 -0.0694 31 1 -0.3633 0.4525 0.9226 32 1 -0.3634 0.5728 -0.8532 33 1 1.6097 -1.7336 1.2891 34 1 1.7689 -0.1775 2.1390 35 1 3.4953 -2.1190 2.8679 36 1 5.3800 -3.1886 5.4038 37 1 3.5063 -2.6513 -0.0127 38 1 5.0461 -1.7629 -0.1108 39 1 3.6533 -1.5636 -2.2018 40 1 3.9878 0.0090 -1.4324 41 1 2.2727 -2.6084 -3.1908 42 1 2.3380 -0.9925 -3.9343 43 1 -0.9586 -3.9226 -6.1245 44 1 -2.1110 -3.3127 -4.8958 45 1 -1.4289 -0.1852 -7.1179 46 1 -1.6815 -1.7849 -7.8567 47 1 -2.8256 -1.1775 -6.6358 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044850599.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:52 Heat of formation + Delta-G solvation = -58.596475 kcal Electronic energy + Delta-G solvation = -30500.720922 eV Core-core repulsion = 26298.988865 eV Total energy + Delta-G solvation = -4201.732057 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.44341 -41.51263 -39.74909 -38.81140 -37.29278 -36.36930 -36.14376 -34.12560 -33.68144 -31.34740 -30.77911 -28.77783 -28.16952 -27.15981 -26.02119 -24.47052 -23.64327 -23.24265 -21.81384 -21.31282 -20.27060 -19.15007 -18.70108 -18.44479 -17.82175 -17.53756 -17.08592 -16.75686 -16.73022 -16.28180 -15.89711 -15.55094 -15.47685 -15.47075 -15.17758 -15.08346 -14.76799 -14.68513 -14.32579 -14.25657 -13.56733 -13.42881 -13.38692 -13.29447 -13.17762 -13.10396 -12.83925 -12.66590 -12.62703 -12.22214 -12.11815 -12.06151 -11.96864 -11.70623 -11.46159 -11.38700 -11.29636 -10.88273 -10.16545 -9.94244 -9.65980 -9.01113 -7.92425 -5.21557 0.57877 0.91185 1.43621 1.48513 1.51216 1.57136 1.70370 1.99837 2.10371 2.57254 3.00716 3.32486 3.40719 3.62989 3.71385 3.82186 3.97467 4.05531 4.08720 4.12357 4.20948 4.23574 4.27956 4.32459 4.36951 4.55206 4.59236 4.67872 4.70566 4.75418 4.79234 4.90567 4.95295 4.98901 5.05202 5.09943 5.20662 5.38634 5.39606 5.49563 5.54178 5.64876 6.00741 6.26485 6.28688 6.33668 6.93287 7.02910 7.34633 8.10169 8.33300 9.31089 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.024048 B = 0.002454 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.067815 B =11409.148728 C =11612.184575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.152 3.848 3 H 0.090 0.910 4 C -0.122 4.122 5 C 0.173 3.827 6 H 0.052 0.948 7 N -0.739 5.739 8 C -0.235 4.235 9 H 0.081 0.919 10 C -0.080 4.080 11 N -0.973 5.973 12 Si 0.972 3.028 13 H -0.278 1.278 14 H -0.300 1.300 15 H -0.276 1.276 16 C -0.141 4.141 17 C 0.111 3.889 18 N -0.600 5.600 19 C 0.498 3.502 20 O -0.560 6.560 21 C 0.096 3.904 22 N -0.568 5.568 23 C 0.517 3.483 24 O -0.502 6.502 25 C 0.077 3.923 26 N -0.622 5.622 27 C 0.113 3.887 28 C 0.696 3.304 29 O -0.581 6.581 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.046 0.954 34 H 0.069 0.931 35 H 0.369 0.631 36 H 0.249 0.751 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.109 0.891 40 H 0.094 0.906 41 H 0.139 0.861 42 H 0.144 0.856 43 H 0.164 0.836 44 H 0.147 0.853 45 H 0.074 0.926 46 H 0.099 0.901 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.184 1.956 -27.455 30.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.049 3.951 3 H 0.107 0.893 4 C -0.161 4.161 5 C 0.065 3.935 6 H 0.070 0.930 7 N -0.377 5.377 8 C -0.366 4.366 9 H 0.099 0.901 10 C -0.272 4.272 11 N -0.624 5.624 12 Si 0.801 3.199 13 H -0.204 1.204 14 H -0.227 1.227 15 H -0.202 1.202 16 C -0.182 4.182 17 C -0.011 4.011 18 N -0.333 5.333 19 C 0.285 3.715 20 O -0.440 6.440 21 C -0.029 4.029 22 N -0.312 5.312 23 C 0.307 3.693 24 O -0.373 6.373 25 C -0.048 4.048 26 N -0.360 5.360 27 C -0.026 4.026 28 C 0.399 3.601 29 O -0.457 6.457 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.200 0.800 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.127 0.873 40 H 0.112 0.888 41 H 0.157 0.843 42 H 0.162 0.838 43 H 0.181 0.819 44 H 0.164 0.836 45 H 0.093 0.907 46 H 0.117 0.883 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.331 2.264 -27.161 30.341 hybrid contribution 0.883 -0.333 1.413 1.699 sum -12.448 1.931 -25.748 28.665 Atomic orbital electron populations 1.21991 0.92958 1.02101 1.00590 1.21375 0.95223 0.95516 0.83034 0.89263 1.22214 0.96075 1.00211 0.97619 1.20415 0.91945 0.94911 0.86240 0.93011 1.42663 1.12287 1.54158 1.28635 1.19605 0.90106 1.20814 1.06108 0.90125 1.25579 1.02108 1.00495 0.98983 1.69829 1.37343 1.35039 1.20188 0.85225 0.80189 0.77372 0.77066 1.20397 1.22699 1.20177 1.22458 1.01324 0.99152 0.95289 1.22009 0.78273 1.02098 0.98741 1.48223 1.08307 1.57009 1.19760 1.21122 0.86633 0.78166 0.85569 1.90744 1.16742 1.56580 1.79891 1.21690 0.87960 1.04698 0.88524 1.46041 1.33810 1.16055 1.35311 1.21616 0.82940 0.80894 0.83832 1.90838 1.67226 1.35605 1.43669 1.22699 0.99733 0.85876 0.96465 1.47663 1.33636 1.15014 1.39689 1.21831 0.94400 0.98843 0.87560 1.16000 0.81049 0.83791 0.79294 1.90943 1.66815 1.17312 1.70667 0.93375 0.92728 0.92240 0.93493 0.91207 0.79966 0.94217 0.93775 0.91015 0.87270 0.88790 0.84311 0.83821 0.81862 0.83557 0.90723 0.88289 0.89404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.55 7.60 71.98 0.55 -3.00 16 2 C 0.15 4.36 3.51 45.12 0.16 4.52 16 3 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 4 C -0.12 -4.14 4.86 30.82 0.15 -3.99 16 5 C 0.17 6.51 2.73 45.02 0.12 6.63 16 6 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 7 N -0.74 -36.70 5.12 -322.81 -1.65 -38.35 16 8 C -0.23 -12.69 9.93 84.03 0.83 -11.85 16 9 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 10 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 11 N -0.97 -59.96 13.06 21.65 0.28 -59.68 16 12 Si 0.97 45.73 29.55 68.60 2.03 47.76 16 13 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 14 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 15 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 16 C -0.14 -4.49 5.66 30.67 0.17 -4.31 16 17 C 0.11 2.49 6.33 86.36 0.55 3.04 16 18 N -0.60 -15.95 2.97 -794.20 -2.36 -18.31 16 19 C 0.50 13.89 7.67 87.66 0.67 14.56 16 20 O -0.56 -18.92 11.83 -3.03 -0.04 -18.96 16 21 C 0.10 2.03 4.58 85.63 0.39 2.42 16 22 N -0.57 -12.37 2.09 -777.21 -1.63 -14.00 16 23 C 0.52 10.27 8.32 87.94 0.73 11.00 16 24 O -0.50 -13.44 17.76 -2.88 -0.05 -13.50 16 25 C 0.08 0.69 7.66 85.76 0.66 1.35 16 26 N -0.62 -8.20 3.42 -866.95 -2.96 -11.17 16 27 C 0.11 0.71 11.33 127.77 1.45 2.16 16 28 C 0.70 15.43 8.31 179.44 1.49 16.93 16 29 O -0.58 -16.85 16.92 -3.83 -0.06 -16.91 16 30 H 0.05 1.64 6.73 -2.39 -0.02 1.62 16 31 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.06 1.86 6.77 -2.39 -0.02 1.85 16 33 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.37 20.26 7.80 -92.71 -0.72 19.53 16 36 H 0.25 15.00 8.31 -92.71 -0.77 14.22 16 37 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.07 2.37 8.14 -2.39 -0.02 2.36 16 39 H 0.11 1.75 5.96 -2.39 -0.01 1.74 16 40 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.14 2.48 7.34 -2.39 -0.02 2.47 16 42 H 0.14 2.46 7.83 -2.39 -0.02 2.44 16 43 H 0.16 0.24 8.14 -2.39 -0.02 0.22 16 44 H 0.15 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.07 0.75 7.67 -2.39 -0.02 0.73 16 46 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 47 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 Total: -1.00 -81.83 381.91 2.22 -79.61 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: 0.27 Total: 28.13 kcal Atomic # 6 Polarization: 26.98 SS G_CDS: 8.39 Total: 35.37 kcal Atomic # 7 Polarization: -133.18 SS G_CDS: -8.32 Total: -141.50 kcal Atomic # 8 Polarization: -49.22 SS G_CDS: -0.15 Total: -49.37 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -81.83 2.22 -79.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044850599.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.015 kcal (2) G-P(sol) polarization free energy of solvation -81.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds