Wall clock time and date at job start Tue Mar 31 2020 21:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.58405 * 2 1 4 4 C 1.53188 * 109.59057 * 120.28633 * 2 1 3 5 5 C 1.53046 * 109.31310 * 65.15126 * 4 2 1 6 6 H 1.09000 * 109.45473 * 301.36452 * 5 4 2 7 7 N 1.46500 * 109.46022 * 181.38970 * 5 4 2 8 8 C 1.36936 * 119.99734 * 155.00180 * 7 5 4 9 9 H 1.07994 * 120.00229 * 359.97438 * 8 7 5 10 10 C 1.38817 * 119.99498 * 179.97438 * 8 7 5 11 11 N 1.31618 * 120.00456 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99532 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47458 * 59.99794 * 12 10 8 14 14 H 1.48499 * 109.46873 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47231 * 299.99663 * 12 10 8 16 16 C 1.53043 * 109.53424 * 61.36867 * 5 4 2 17 17 C 1.53189 * 109.31044 * 298.63451 * 16 5 4 18 18 N 1.46921 * 108.78171 * 54.63907 * 17 16 5 19 19 C 1.34777 * 120.63330 * 126.36075 * 18 17 16 20 20 O 1.21282 * 119.99818 * 180.02562 * 19 18 17 21 21 C 1.50698 * 119.99957 * 0.03130 * 19 18 17 22 22 N 1.46497 * 109.46797 * 179.97438 * 21 19 18 23 23 C 1.34770 * 124.17826 * 269.69488 * 22 21 19 24 24 O 1.21232 * 127.15562 * 0.02562 * 23 22 21 25 25 C 1.51586 * 105.68314 * 179.97438 * 23 22 21 26 26 N 1.47310 * 103.59409 * 0.32481 * 25 23 22 27 27 C 1.46495 * 126.68891 * 179.76758 * 26 25 23 28 28 C 1.33798 * 124.17872 * 90.00525 * 22 21 19 29 29 O 1.21541 * 123.76599 * 359.95214 * 28 22 21 30 30 H 1.09002 * 109.47153 * 299.71282 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.71473 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.71454 * 1 2 3 33 33 H 1.08999 * 109.49780 * 185.10470 * 4 2 1 34 34 H 1.09000 * 109.49415 * 305.20314 * 4 2 1 35 35 H 0.97003 * 119.99679 * 334.99484 * 7 5 4 36 36 H 0.96997 * 120.00240 * 180.02562 * 11 10 8 37 37 H 1.08995 * 109.50070 * 58.58691 * 16 5 4 38 38 H 1.09001 * 109.49032 * 178.65470 * 16 5 4 39 39 H 1.09004 * 109.58329 * 174.43009 * 17 16 5 40 40 H 1.09004 * 109.58996 * 294.85113 * 17 16 5 41 41 H 1.08990 * 109.46889 * 299.99575 * 21 19 18 42 42 H 1.09004 * 109.46984 * 59.99368 * 21 19 18 43 43 H 1.09003 * 110.76193 * 241.71402 * 25 23 22 44 44 H 1.08995 * 110.56112 * 118.83640 * 25 23 22 45 45 H 1.09005 * 109.47263 * 180.02562 * 27 26 25 46 46 H 1.08996 * 109.47578 * 300.01884 * 27 26 25 47 47 H 1.09004 * 109.47300 * 60.01718 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7278 1.2462 5 6 1.6415 -2.2027 1.1728 6 1 0.5566 -2.2801 1.1018 7 7 2.1024 -2.8949 2.3789 8 6 1.4651 -4.0305 2.8022 9 1 0.6224 -4.4157 2.2473 10 6 1.9022 -4.6867 3.9448 11 7 2.9294 -4.2176 4.6209 12 14 1.0332 -6.2363 4.5220 13 1 1.1118 -7.2723 3.4610 14 1 1.6883 -6.7409 5.7554 15 1 -0.3910 -5.9278 4.8081 16 6 2.2802 -2.8464 -0.0601 17 6 1.7692 -2.1426 -1.3211 18 7 2.0225 -0.7010 -1.1937 19 6 2.6945 -0.0343 -2.1532 20 8 2.8975 1.1556 -2.0360 21 6 3.1933 -0.7675 -3.3717 22 7 3.8855 0.1719 -4.2574 23 6 3.2834 0.8681 -5.2418 24 8 2.1112 0.8367 -5.5495 25 6 4.3766 1.6995 -5.8834 26 7 5.5821 1.3356 -5.1190 27 6 6.9383 1.8489 -5.3268 28 6 5.1947 0.4402 -4.1928 29 8 5.9498 -0.0693 -3.3881 30 1 -0.3633 0.5094 0.8926 31 1 -0.3633 -1.0277 -0.0051 32 1 -0.3634 0.5183 -0.8874 33 1 3.1298 -0.6487 1.2920 34 1 1.6075 -0.2758 2.1371 35 1 2.8591 -2.5488 2.8774 36 1 3.2351 -4.6763 5.4190 37 1 3.3640 -2.7474 -0.0020 38 1 2.0128 -3.9024 -0.0987 39 1 2.2944 -2.5301 -2.1941 40 1 0.6987 -2.3173 -1.4289 41 1 3.8828 -1.5540 -3.0654 42 1 2.3490 -1.2101 -3.9004 43 1 4.1636 2.7636 -5.7802 44 1 4.4935 1.4331 -6.9338 45 1 7.6147 1.3910 -4.6050 46 1 7.2676 1.6070 -6.3373 47 1 6.9420 2.9307 -5.1928 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044850600.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:57 Heat of formation + Delta-G solvation = -47.548345 kcal Electronic energy + Delta-G solvation = -30430.652157 eV Core-core repulsion = 26229.399182 eV Total energy + Delta-G solvation = -4201.252975 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.64507 -40.21676 -38.88069 -37.71544 -36.43946 -35.41609 -34.57455 -32.71561 -31.83215 -30.43642 -29.36006 -27.83420 -27.28729 -26.54714 -24.20801 -23.02709 -22.80348 -22.15674 -21.00678 -20.07526 -18.50535 -18.01229 -17.61554 -17.10502 -16.99950 -16.86547 -15.95956 -15.58055 -15.28268 -15.17023 -14.88342 -14.69121 -14.37959 -14.22995 -14.03598 -13.76704 -13.52771 -13.40408 -13.16590 -12.98414 -12.80543 -12.76269 -12.67899 -12.24848 -11.83396 -11.67535 -11.32266 -11.19918 -10.93393 -10.87897 -10.77252 -10.63040 -10.53837 -10.46994 -10.23815 -9.76552 -9.63111 -9.59330 -9.35954 -8.91168 -8.55748 -6.98928 -5.78074 -3.07535 1.34640 1.65462 2.49581 2.55934 2.70125 3.09393 3.42182 3.46740 3.48038 3.67245 4.28994 4.33460 4.56482 4.57955 4.73255 4.74856 4.86890 4.96699 4.98926 5.12919 5.13272 5.23944 5.26126 5.30423 5.44596 5.49453 5.56388 5.59526 5.73583 5.80558 5.89567 6.02793 6.05319 6.17102 6.28033 6.36873 6.45299 6.52144 6.60620 6.77131 6.87708 7.02875 7.03931 7.41391 7.66635 7.77737 8.09350 8.40003 9.51087 10.08806 10.43326 11.44357 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020365 B = 0.002544 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.553245 B =11004.103029 C =11513.166230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.143 3.857 3 H 0.094 0.906 4 C -0.134 4.134 5 C 0.179 3.821 6 H 0.052 0.948 7 N -0.724 5.724 8 C -0.241 4.241 9 H 0.070 0.930 10 C -0.013 4.013 11 N -0.932 5.932 12 Si 0.906 3.094 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 C -0.153 4.153 17 C 0.103 3.897 18 N -0.595 5.595 19 C 0.505 3.495 20 O -0.540 6.540 21 C 0.100 3.900 22 N -0.561 5.561 23 C 0.527 3.473 24 O -0.468 6.468 25 C 0.067 3.933 26 N -0.630 5.630 27 C 0.119 3.881 28 C 0.704 3.296 29 O -0.535 6.535 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.384 0.616 36 H 0.256 0.744 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.128 0.872 42 H 0.125 0.875 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.091 0.909 46 H 0.068 0.932 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.855 12.126 -24.250 27.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.039 3.961 3 H 0.113 0.887 4 C -0.173 4.173 5 C 0.069 3.931 6 H 0.070 0.930 7 N -0.364 5.364 8 C -0.372 4.372 9 H 0.088 0.912 10 C -0.209 4.209 11 N -0.580 5.580 12 Si 0.737 3.263 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 C -0.194 4.194 17 C -0.020 4.020 18 N -0.328 5.328 19 C 0.291 3.709 20 O -0.418 6.418 21 C -0.025 4.025 22 N -0.306 5.306 23 C 0.315 3.685 24 O -0.338 6.338 25 C -0.059 4.059 26 N -0.370 5.370 27 C -0.021 4.021 28 C 0.406 3.594 29 O -0.407 6.407 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.217 0.783 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.146 0.854 42 H 0.143 0.857 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.109 0.891 46 H 0.086 0.914 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.735 12.309 -23.820 26.951 hybrid contribution -0.176 -0.900 0.575 1.082 sum 2.559 11.409 -23.245 26.020 Atomic orbital electron populations 1.22138 0.94855 1.02832 1.01967 1.21209 0.94077 0.97060 0.83706 0.88744 1.22221 1.01449 0.97271 0.96313 1.20185 0.96776 0.89086 0.87031 0.93046 1.42431 1.37979 1.29387 1.26586 1.19170 1.10256 1.01213 1.06527 0.91231 1.24753 0.98471 0.99464 0.98199 1.69651 1.27471 1.41377 1.19494 0.86287 0.78811 0.83244 0.77931 1.21284 1.21728 1.21278 1.22700 1.01443 1.00577 0.94658 1.21933 1.01272 0.79005 0.99765 1.48194 1.54684 1.09696 1.20258 1.20568 0.78252 0.87770 0.84314 1.90685 1.57426 1.15082 1.78591 1.21552 0.99457 0.91395 0.90064 1.45882 1.09860 1.42246 1.32620 1.20849 0.88942 0.79345 0.79379 1.90824 1.15017 1.63302 1.64625 1.22451 0.82965 1.02055 0.98400 1.47397 1.09340 1.45061 1.35219 1.21545 0.78639 0.99304 1.02649 1.15777 0.81540 0.80287 0.81748 1.91015 1.54959 1.55318 1.39454 0.91250 0.91554 0.92882 0.91789 0.90478 0.78255 0.93424 0.91987 0.90430 0.90726 0.90918 0.85404 0.85740 0.85905 0.85977 0.89056 0.91350 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.02 37.16 0.34 -1.73 16 2 C 0.14 2.11 3.20 -67.60 -0.22 1.89 16 3 H 0.09 1.50 7.01 -51.93 -0.36 1.14 16 4 C -0.13 -2.25 5.02 -26.61 -0.13 -2.38 16 5 C 0.18 3.37 2.52 -67.88 -0.17 3.20 16 6 H 0.05 0.97 6.44 -51.93 -0.33 0.64 16 7 N -0.72 -17.64 5.12 -53.38 -0.27 -17.91 16 8 C -0.24 -6.48 9.93 -15.06 -0.15 -6.62 16 9 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 10 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 11 N -0.93 -27.98 13.06 55.49 0.72 -27.25 16 12 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 C -0.15 -2.49 5.66 -26.61 -0.15 -2.64 16 17 C 0.10 1.29 5.92 -3.71 -0.02 1.26 16 18 N -0.59 -8.39 2.68 -165.22 -0.44 -8.83 16 19 C 0.50 7.52 7.77 -10.99 -0.09 7.43 16 20 O -0.54 -9.81 15.85 5.56 0.09 -9.73 16 21 C 0.10 1.16 4.53 -5.20 -0.02 1.14 16 22 N -0.56 -6.65 2.09 -122.02 -0.26 -6.90 16 23 C 0.53 5.49 8.32 -10.55 -0.09 5.40 16 24 O -0.47 -6.00 17.75 5.60 0.10 -5.90 16 25 C 0.07 0.41 7.66 -4.32 -0.03 0.38 16 26 N -0.63 -5.26 3.42 -187.95 -0.64 -5.91 16 27 C 0.12 0.61 11.33 59.84 0.68 1.29 16 28 C 0.70 8.81 8.31 -88.02 -0.73 8.08 16 29 O -0.53 -8.62 16.92 5.33 0.09 -8.53 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.86 5.72 -51.93 -0.30 0.56 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.38 10.15 7.80 -40.82 -0.32 9.84 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.07 0.72 5.93 -51.93 -0.31 0.41 16 40 H 0.07 0.82 7.48 -51.93 -0.39 0.43 16 41 H 0.13 1.37 7.41 -51.93 -0.38 0.98 16 42 H 0.12 1.13 7.80 -51.93 -0.40 0.72 16 43 H 0.12 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.09 0.60 7.67 -51.93 -0.40 0.20 16 46 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 47 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 LS Contribution 383.28 15.07 5.78 5.78 Total: -1.00 -36.92 383.28 -7.72 -44.64 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -6.97 Total: 7.25 kcal Atomic # 6 Polarization: 17.12 SS G_CDS: -0.89 Total: 16.24 kcal Atomic # 7 Polarization: -65.91 SS G_CDS: -0.89 Total: -66.80 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: 0.28 Total: -24.16 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.92 -7.72 -44.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044850600.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.911 kcal (2) G-P(sol) polarization free energy of solvation -36.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds