Wall clock time and date at job start Tue Mar 31 2020 21:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.58405 * 2 1 4 4 C 1.53188 * 109.59057 * 120.28633 * 2 1 3 5 5 C 1.53046 * 109.31310 * 65.15126 * 4 2 1 6 6 H 1.09000 * 109.45473 * 301.36452 * 5 4 2 7 7 N 1.46500 * 109.46022 * 181.38970 * 5 4 2 8 8 C 1.36936 * 119.99734 * 155.00180 * 7 5 4 9 9 H 1.07994 * 120.00229 * 359.97438 * 8 7 5 10 10 C 1.38817 * 119.99498 * 179.97438 * 8 7 5 11 11 N 1.31618 * 120.00456 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99532 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47458 * 59.99794 * 12 10 8 14 14 H 1.48499 * 109.46873 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47231 * 299.99663 * 12 10 8 16 16 C 1.53043 * 109.53424 * 61.36867 * 5 4 2 17 17 C 1.53189 * 109.31044 * 298.63451 * 16 5 4 18 18 N 1.46921 * 108.78171 * 54.63907 * 17 16 5 19 19 C 1.34777 * 120.63330 * 126.36075 * 18 17 16 20 20 O 1.21282 * 119.99818 * 180.02562 * 19 18 17 21 21 C 1.50698 * 119.99957 * 0.03130 * 19 18 17 22 22 N 1.46497 * 109.46797 * 179.97438 * 21 19 18 23 23 C 1.34770 * 124.17826 * 269.69488 * 22 21 19 24 24 O 1.21232 * 127.15562 * 0.02562 * 23 22 21 25 25 C 1.51586 * 105.68314 * 179.97438 * 23 22 21 26 26 N 1.47310 * 103.59409 * 0.32481 * 25 23 22 27 27 C 1.46495 * 126.68891 * 179.76758 * 26 25 23 28 28 C 1.33798 * 124.17872 * 90.00525 * 22 21 19 29 29 O 1.21541 * 123.76599 * 359.95214 * 28 22 21 30 30 H 1.09002 * 109.47153 * 299.71282 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.71473 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.71454 * 1 2 3 33 33 H 1.08999 * 109.49780 * 185.10470 * 4 2 1 34 34 H 1.09000 * 109.49415 * 305.20314 * 4 2 1 35 35 H 0.97003 * 119.99679 * 334.99484 * 7 5 4 36 36 H 0.96997 * 120.00240 * 180.02562 * 11 10 8 37 37 H 1.08995 * 109.50070 * 58.58691 * 16 5 4 38 38 H 1.09001 * 109.49032 * 178.65470 * 16 5 4 39 39 H 1.09004 * 109.58329 * 174.43009 * 17 16 5 40 40 H 1.09004 * 109.58996 * 294.85113 * 17 16 5 41 41 H 1.08990 * 109.46889 * 299.99575 * 21 19 18 42 42 H 1.09004 * 109.46984 * 59.99368 * 21 19 18 43 43 H 1.09003 * 110.76193 * 241.71402 * 25 23 22 44 44 H 1.08995 * 110.56112 * 118.83640 * 25 23 22 45 45 H 1.09005 * 109.47263 * 180.02562 * 27 26 25 46 46 H 1.08996 * 109.47578 * 300.01884 * 27 26 25 47 47 H 1.09004 * 109.47300 * 60.01718 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7278 1.2462 5 6 1.6415 -2.2027 1.1728 6 1 0.5566 -2.2801 1.1018 7 7 2.1024 -2.8949 2.3789 8 6 1.4651 -4.0305 2.8022 9 1 0.6224 -4.4157 2.2473 10 6 1.9022 -4.6867 3.9448 11 7 2.9294 -4.2176 4.6209 12 14 1.0332 -6.2363 4.5220 13 1 1.1118 -7.2723 3.4610 14 1 1.6883 -6.7409 5.7554 15 1 -0.3910 -5.9278 4.8081 16 6 2.2802 -2.8464 -0.0601 17 6 1.7692 -2.1426 -1.3211 18 7 2.0225 -0.7010 -1.1937 19 6 2.6945 -0.0343 -2.1532 20 8 2.8975 1.1556 -2.0360 21 6 3.1933 -0.7675 -3.3717 22 7 3.8855 0.1719 -4.2574 23 6 3.2834 0.8681 -5.2418 24 8 2.1112 0.8367 -5.5495 25 6 4.3766 1.6995 -5.8834 26 7 5.5821 1.3356 -5.1190 27 6 6.9383 1.8489 -5.3268 28 6 5.1947 0.4402 -4.1928 29 8 5.9498 -0.0693 -3.3881 30 1 -0.3633 0.5094 0.8926 31 1 -0.3633 -1.0277 -0.0051 32 1 -0.3634 0.5183 -0.8874 33 1 3.1298 -0.6487 1.2920 34 1 1.6075 -0.2758 2.1371 35 1 2.8591 -2.5488 2.8774 36 1 3.2351 -4.6763 5.4190 37 1 3.3640 -2.7474 -0.0020 38 1 2.0128 -3.9024 -0.0987 39 1 2.2944 -2.5301 -2.1941 40 1 0.6987 -2.3173 -1.4289 41 1 3.8828 -1.5540 -3.0654 42 1 2.3490 -1.2101 -3.9004 43 1 4.1636 2.7636 -5.7802 44 1 4.4935 1.4331 -6.9338 45 1 7.6147 1.3910 -4.6050 46 1 7.2676 1.6070 -6.3373 47 1 6.9420 2.9307 -5.1928 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044850600.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:57 Heat of formation + Delta-G solvation = -74.063408 kcal Electronic energy + Delta-G solvation = -30431.801936 eV Core-core repulsion = 26229.399182 eV Total energy + Delta-G solvation = -4202.402754 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.45416 -41.40716 -39.75556 -39.03178 -37.31853 -36.33173 -36.18270 -34.06984 -33.45761 -31.34367 -30.83603 -28.77992 -28.46028 -27.20959 -25.96059 -24.45134 -23.65588 -23.30976 -22.23629 -21.06936 -19.81589 -19.13402 -18.79848 -18.50401 -17.87723 -17.82400 -16.93502 -16.76140 -16.56719 -16.31165 -15.89187 -15.68970 -15.47430 -15.33340 -15.14417 -15.06738 -14.94707 -14.66953 -14.31546 -14.13373 -14.00365 -13.40320 -13.35554 -13.22172 -13.19425 -12.99110 -12.83935 -12.73890 -12.48211 -12.21640 -12.13612 -12.09554 -11.97623 -11.72652 -11.66660 -11.39831 -11.13045 -10.89465 -10.66319 -9.98581 -9.76976 -9.00331 -7.91743 -5.20780 0.56790 0.88753 1.38200 1.48772 1.51485 1.57372 1.68131 1.99342 2.08583 2.57828 2.99987 3.28521 3.41447 3.61634 3.73488 3.83002 3.94700 4.03385 4.07264 4.10803 4.21319 4.23368 4.24540 4.35197 4.36630 4.51106 4.56566 4.61139 4.68957 4.75065 4.81584 4.88722 4.94247 4.98520 5.03646 5.05401 5.22823 5.30975 5.37826 5.50711 5.53978 5.60983 5.99098 6.23558 6.29002 6.30559 6.89694 6.96876 7.35172 8.10940 8.33975 9.31932 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020365 B = 0.002544 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.553245 B =11004.103029 C =11513.166230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.147 3.853 3 H 0.081 0.919 4 C -0.123 4.123 5 C 0.175 3.825 6 H 0.059 0.941 7 N -0.739 5.739 8 C -0.233 4.233 9 H 0.082 0.918 10 C -0.080 4.080 11 N -0.974 5.974 12 Si 0.972 3.028 13 H -0.276 1.276 14 H -0.301 1.301 15 H -0.277 1.277 16 C -0.144 4.144 17 C 0.109 3.891 18 N -0.595 5.595 19 C 0.499 3.501 20 O -0.579 6.579 21 C 0.099 3.901 22 N -0.569 5.569 23 C 0.521 3.479 24 O -0.497 6.497 25 C 0.076 3.924 26 N -0.622 5.622 27 C 0.112 3.888 28 C 0.692 3.308 29 O -0.585 6.585 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.368 0.632 36 H 0.249 0.751 37 H 0.042 0.958 38 H 0.072 0.928 39 H 0.109 0.891 40 H 0.096 0.904 41 H 0.135 0.865 42 H 0.154 0.846 43 H 0.149 0.851 44 H 0.166 0.834 45 H 0.070 0.930 46 H 0.101 0.899 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.669 12.358 -27.493 30.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.043 3.957 3 H 0.099 0.901 4 C -0.162 4.162 5 C 0.067 3.933 6 H 0.077 0.923 7 N -0.378 5.378 8 C -0.365 4.365 9 H 0.100 0.900 10 C -0.272 4.272 11 N -0.625 5.625 12 Si 0.801 3.199 13 H -0.202 1.202 14 H -0.228 1.228 15 H -0.203 1.203 16 C -0.185 4.185 17 C -0.013 4.013 18 N -0.328 5.328 19 C 0.287 3.713 20 O -0.459 6.459 21 C -0.026 4.026 22 N -0.313 5.313 23 C 0.311 3.689 24 O -0.368 6.368 25 C -0.048 4.048 26 N -0.360 5.360 27 C -0.027 4.027 28 C 0.394 3.606 29 O -0.462 6.462 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.199 0.801 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.091 0.909 39 H 0.127 0.873 40 H 0.114 0.886 41 H 0.153 0.847 42 H 0.171 0.829 43 H 0.166 0.834 44 H 0.184 0.816 45 H 0.089 0.911 46 H 0.119 0.881 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.516 12.568 -27.160 29.965 hybrid contribution 0.212 -0.864 1.516 1.758 sum 1.728 11.704 -25.644 28.242 Atomic orbital electron populations 1.22065 0.92844 1.03247 1.02758 1.21077 0.95497 0.96042 0.83058 0.90060 1.22077 1.00119 0.96464 0.97550 1.20428 0.97145 0.89679 0.86024 0.92313 1.42680 1.37475 1.29304 1.28307 1.19604 1.09747 1.01237 1.05881 0.90028 1.25574 0.99698 1.02901 0.99017 1.69827 1.29591 1.43008 1.20061 0.85233 0.77823 0.79805 0.77041 1.20204 1.22784 1.20317 1.22483 1.00064 1.00495 0.95409 1.22029 1.03006 0.77483 0.98802 1.48266 1.54353 1.10319 1.19825 1.21189 0.77438 0.87529 0.85131 1.90658 1.58768 1.16901 1.79583 1.21659 1.00555 0.91256 0.89129 1.46043 1.09922 1.42484 1.32861 1.21555 0.89399 0.79114 0.78865 1.90808 1.16357 1.64251 1.65401 1.22741 0.80052 1.02449 0.99581 1.47667 1.10995 1.43404 1.33967 1.21829 0.76770 1.00198 1.03898 1.16094 0.81450 0.80887 0.82121 1.90973 1.56086 1.57450 1.41682 0.90619 0.91194 0.92001 0.93836 0.90982 0.80060 0.94245 0.93935 0.90906 0.87262 0.88582 0.84728 0.82871 0.83371 0.81644 0.91132 0.88073 0.89280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.02 71.98 0.65 -3.01 16 2 C 0.15 4.29 3.20 44.97 0.14 4.44 16 3 H 0.08 2.63 7.01 -2.39 -0.02 2.61 16 4 C -0.12 -4.23 5.02 30.67 0.15 -4.07 16 5 C 0.18 6.55 2.52 45.02 0.11 6.67 16 6 H 0.06 2.13 6.44 -2.39 -0.02 2.12 16 7 N -0.74 -36.65 5.12 -322.80 -1.65 -38.31 16 8 C -0.23 -12.54 9.93 84.03 0.83 -11.71 16 9 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 10 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 11 N -0.97 -60.12 13.06 21.65 0.28 -59.84 16 12 Si 0.97 45.66 29.55 68.60 2.03 47.69 16 13 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 14 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 15 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 16 C -0.14 -4.59 5.66 30.67 0.17 -4.42 16 17 C 0.11 2.46 5.92 86.36 0.51 2.97 16 18 N -0.60 -16.13 2.68 -795.03 -2.13 -18.27 16 19 C 0.50 14.54 7.77 87.66 0.68 15.22 16 20 O -0.58 -21.14 15.85 -3.03 -0.05 -21.18 16 21 C 0.10 2.15 4.53 85.63 0.39 2.54 16 22 N -0.57 -12.78 2.09 -777.22 -1.63 -14.40 16 23 C 0.52 9.74 8.32 87.94 0.73 10.47 16 24 O -0.50 -11.78 17.75 -2.88 -0.05 -11.84 16 25 C 0.08 0.66 7.66 85.76 0.66 1.31 16 26 N -0.62 -8.98 3.42 -866.97 -2.96 -11.95 16 27 C 0.11 0.89 11.33 127.77 1.45 2.34 16 28 C 0.69 16.86 8.31 179.44 1.49 18.35 16 29 O -0.59 -19.30 16.92 -3.85 -0.07 -19.37 16 30 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.07 1.64 5.72 -2.39 -0.01 1.63 16 32 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.37 20.28 7.80 -92.71 -0.72 19.55 16 36 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 37 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.11 1.77 5.93 -2.39 -0.01 1.76 16 40 H 0.10 1.82 7.48 -2.39 -0.02 1.80 16 41 H 0.13 2.73 7.41 -2.39 -0.02 2.71 16 42 H 0.15 2.37 7.80 -2.38 -0.02 2.35 16 43 H 0.15 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.17 0.11 8.14 -2.39 -0.02 0.09 16 45 H 0.07 0.89 7.67 -2.38 -0.02 0.88 16 46 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 47 H 0.09 0.37 8.14 -2.38 -0.02 0.35 16 Total: -1.00 -84.05 383.28 2.49 -81.56 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: 0.28 Total: 28.88 kcal Atomic # 6 Polarization: 28.57 SS G_CDS: 8.44 Total: 37.02 kcal Atomic # 7 Polarization: -134.67 SS G_CDS: -8.09 Total: -142.76 kcal Atomic # 8 Polarization: -52.22 SS G_CDS: -0.16 Total: -52.39 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -84.05 2.49 -81.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044850600.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.499 kcal (2) G-P(sol) polarization free energy of solvation -84.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds