Wall clock time and date at job start Tue Mar 31 2020 21:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.70342 * 2 1 4 4 C 1.53194 * 109.58433 * 239.64862 * 2 1 3 5 5 C 1.53044 * 109.31373 * 185.57617 * 4 2 1 6 6 C 1.53040 * 109.53661 * 61.36456 * 5 4 2 7 7 H 1.09000 * 109.49648 * 58.58474 * 6 5 4 8 8 N 1.46499 * 109.49758 * 178.68364 * 6 5 4 9 9 C 1.34768 * 119.99967 * 205.00027 * 8 6 5 10 10 O 1.21286 * 120.00379 * 359.97438 * 9 8 6 11 11 C 1.50703 * 119.99833 * 180.02562 * 9 8 6 12 12 N 1.46511 * 109.47212 * 180.02562 * 11 9 8 13 13 C 1.46406 * 119.53298 * 89.99614 * 12 11 9 14 14 C 1.53038 * 109.51615 * 144.12578 * 13 12 11 15 15 C 1.50812 * 109.18398 * 46.69280 * 14 13 12 16 16 O 1.21240 * 120.01334 * 145.78853 * 15 14 13 17 17 N 1.34551 * 119.96861 * 325.76795 * 15 14 13 18 18 C 1.34288 * 119.53089 * 269.72483 * 12 11 9 19 19 O 1.21536 * 119.21612 * 5.71364 * 18 12 11 20 20 C 1.53193 * 109.31267 * 298.63456 * 6 5 4 21 21 N 1.46922 * 109.58819 * 120.36161 * 2 1 3 22 22 C 1.36936 * 120.63100 * 353.37190 * 21 2 1 23 23 H 1.07993 * 120.00038 * 29.03060 * 22 21 2 24 24 C 1.38812 * 119.99785 * 209.03584 * 22 21 2 25 25 N 1.31617 * 120.00378 * 15.01823 * 24 22 21 26 26 Si 1.86807 * 119.99569 * 195.01873 * 24 22 21 27 27 H 1.48494 * 109.47225 * 90.00113 * 26 24 22 28 28 H 1.48501 * 109.46797 * 209.99979 * 26 24 22 29 29 H 1.48497 * 109.47032 * 329.99739 * 26 24 22 30 30 H 1.09002 * 109.47321 * 180.35585 * 1 2 3 31 31 H 1.09005 * 109.46837 * 300.35122 * 1 2 3 32 32 H 1.09001 * 109.47185 * 60.35084 * 1 2 3 33 33 H 1.09003 * 109.49954 * 65.62825 * 4 2 1 34 34 H 1.09000 * 109.49823 * 305.53029 * 4 2 1 35 35 H 1.08997 * 109.45967 * 181.38714 * 5 4 2 36 36 H 1.09003 * 109.45879 * 301.34729 * 5 4 2 37 37 H 0.97007 * 119.99755 * 25.00765 * 8 6 5 38 38 H 1.08997 * 109.47125 * 299.99816 * 11 9 8 39 39 H 1.09001 * 109.47205 * 60.00079 * 11 9 8 40 40 H 1.09004 * 109.46462 * 264.13825 * 13 12 11 41 41 H 1.08997 * 109.46817 * 24.11105 * 13 12 11 42 42 H 1.09006 * 109.52030 * 166.60496 * 14 13 12 43 43 H 1.08999 * 109.52058 * 286.72239 * 14 13 12 44 44 H 0.97002 * 119.51075 * 184.45576 * 17 15 14 45 45 H 1.09004 * 109.58639 * 174.41633 * 20 6 5 46 46 H 1.08993 * 109.58902 * 294.70520 * 20 6 5 47 47 H 0.96999 * 120.00020 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2455 5 6 3.5675 -0.8479 -1.1703 6 6 3.9569 -1.6657 0.0632 7 1 3.4982 -2.6528 0.0050 8 7 5.4142 -1.8054 0.1172 9 6 5.9676 -2.8482 0.7672 10 8 5.2592 -3.6708 1.3080 11 6 7.4668 -2.9915 0.8232 12 7 7.8143 -4.1966 1.5805 13 6 7.9602 -5.4730 0.8785 14 6 9.0848 -6.2859 1.5240 15 6 8.9156 -6.2630 3.0224 16 8 9.2231 -7.2325 3.6823 17 7 8.4236 -5.1661 3.6266 18 6 7.9997 -4.1136 2.9079 19 8 7.7740 -3.0621 3.4739 20 6 3.4651 -0.9470 1.3235 21 7 2.0225 -0.6996 1.1944 22 6 1.1538 -1.1129 2.1688 23 1 0.1360 -1.3673 1.9124 24 6 1.5813 -1.2047 3.4863 25 7 2.7046 -0.6266 3.8555 26 14 0.5623 -2.1489 4.7352 27 1 0.9962 -3.5688 4.7562 28 1 0.7533 -1.5529 6.0819 29 1 -0.8727 -2.0752 4.3603 30 1 -0.3634 -1.0277 0.0064 31 1 -0.3633 0.5193 0.8869 32 1 -0.3633 0.5084 -0.8931 33 1 1.7660 -0.1667 -2.1369 34 1 1.6029 -1.7252 -1.2915 35 1 3.9377 -1.3447 -2.0671 36 1 4.0061 0.1474 -1.0994 37 1 5.9809 -1.1471 -0.3149 38 1 7.8621 -3.0726 -0.1893 39 1 7.8973 -2.1177 1.3125 40 1 7.0261 -6.0313 0.9418 41 1 8.2014 -5.2866 -0.1680 42 1 9.0406 -7.3153 1.1682 43 1 10.0479 -5.8498 1.2587 44 1 8.3781 -5.1337 4.5950 45 1 3.6518 -1.5719 2.1969 46 1 3.9922 0.0007 1.4329 47 1 3.0035 -0.6911 4.7761 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071968099.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:57 Heat of formation + Delta-G solvation = -67.381001 kcal Electronic energy + Delta-G solvation = -30726.323571 eV Core-core repulsion = 26524.210588 eV Total energy + Delta-G solvation = -4202.112983 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.79303 -39.64430 -38.85563 -37.60075 -36.29443 -34.78336 -34.33398 -32.78858 -31.85694 -30.74893 -29.81616 -27.89413 -25.79535 -25.29243 -24.84039 -23.19214 -22.24268 -21.02595 -20.13337 -19.43971 -19.01244 -18.48918 -17.88089 -17.23644 -16.45934 -16.38068 -15.96656 -15.26030 -15.19649 -14.89786 -14.62433 -14.59507 -14.38875 -13.84924 -13.77194 -13.67973 -13.35386 -13.23503 -12.91134 -12.71487 -12.36579 -12.27404 -11.86377 -11.84007 -11.39950 -11.10318 -10.84552 -10.83027 -10.68756 -10.51702 -10.42722 -10.37099 -10.33137 -10.23546 -9.96411 -9.90048 -9.60702 -9.43109 -8.87143 -8.52498 -8.36525 -6.57289 -5.68121 -3.13500 1.55446 2.10832 2.82219 2.98106 3.07319 3.46078 3.52402 3.54237 3.58022 4.07264 4.21224 4.56442 4.58056 4.65942 4.91725 4.97343 5.03946 5.23447 5.35533 5.39118 5.40649 5.51979 5.59681 5.68377 5.78591 5.93149 5.97937 6.10568 6.25993 6.28139 6.31935 6.40067 6.46320 6.51763 6.63675 6.75588 6.95075 7.06536 7.14657 7.18208 7.33020 7.36121 7.81418 7.87218 7.93109 8.04962 8.55042 8.62443 9.29838 9.94114 10.48792 11.39542 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012687 B = 0.003508 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.522559 B = 7980.202780 C = 9504.015041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.126 4.126 5 C -0.115 4.115 6 C 0.118 3.882 7 H 0.080 0.920 8 N -0.719 5.719 9 C 0.492 3.508 10 O -0.522 6.522 11 C 0.111 3.889 12 N -0.599 5.599 13 C 0.110 3.890 14 C -0.156 4.156 15 C 0.524 3.476 16 O -0.508 6.508 17 N -0.673 5.673 18 C 0.712 3.288 19 O -0.539 6.539 20 C 0.168 3.832 21 N -0.583 5.583 22 C -0.256 4.256 23 H 0.070 0.930 24 C 0.008 3.992 25 N -0.897 5.897 26 Si 0.899 3.101 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.279 1.279 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.037 0.963 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.392 0.608 38 H 0.111 0.889 39 H 0.117 0.883 40 H 0.082 0.918 41 H 0.102 0.898 42 H 0.126 0.874 43 H 0.114 0.886 44 H 0.427 0.573 45 H 0.095 0.905 46 H 0.016 0.984 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.187 -5.718 -13.460 20.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.153 4.153 6 C 0.013 3.987 7 H 0.098 0.902 8 N -0.370 5.370 9 C 0.275 3.725 10 O -0.397 6.397 11 C -0.016 4.016 12 N -0.336 5.336 13 C -0.013 4.013 14 C -0.197 4.197 15 C 0.312 3.688 16 O -0.381 6.381 17 N -0.342 5.342 18 C 0.413 3.587 19 O -0.412 6.412 20 C 0.041 3.959 21 N -0.307 5.307 22 C -0.386 4.386 23 H 0.088 0.912 24 C -0.192 4.192 25 N -0.541 5.541 26 Si 0.729 3.271 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.204 1.204 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.225 0.775 38 H 0.129 0.871 39 H 0.135 0.865 40 H 0.100 0.900 41 H 0.120 0.880 42 H 0.144 0.856 43 H 0.132 0.868 44 H 0.268 0.732 45 H 0.113 0.887 46 H 0.034 0.966 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.756 -6.266 -12.418 19.563 hybrid contribution -0.190 -0.133 0.922 0.951 sum 13.566 -6.399 -11.495 18.898 Atomic orbital electron populations 1.21799 0.96030 1.01408 1.00133 1.20483 0.93046 0.93539 0.87114 0.95809 1.22049 0.94350 1.01279 0.98925 1.21674 0.97391 0.99650 0.96626 1.21976 0.77728 1.00761 0.98261 0.90180 1.46029 1.08670 1.26548 1.55788 1.20883 0.90500 0.82085 0.79026 1.90757 1.63050 1.42250 1.43639 1.21357 0.93891 0.88751 0.97568 1.46473 1.71874 1.09884 1.05406 1.21669 0.98653 0.83676 0.97280 1.22262 1.01842 1.04904 0.90659 1.20959 0.75013 0.81459 0.91383 1.90790 1.47077 1.33111 1.67111 1.44244 1.60783 1.16487 1.12712 1.15521 0.77847 0.83583 0.81769 1.91076 1.54291 1.27201 1.68614 1.21081 0.83435 0.96950 0.94440 1.44026 1.02672 1.64724 1.19272 1.19128 0.94720 1.38577 0.86138 0.91214 1.25074 0.97673 0.99386 0.97026 1.69977 1.23128 1.44041 1.16959 0.86346 0.79690 0.80078 0.80977 1.21437 1.21791 1.20439 0.92806 0.92027 0.94382 0.92726 0.92142 0.93167 0.92277 0.77498 0.87108 0.86467 0.89976 0.87961 0.85599 0.86808 0.73154 0.88675 0.96577 0.93642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 7.94 37.16 0.30 -2.27 16 2 C 0.16 3.37 3.50 -67.60 -0.24 3.13 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.10 5.37 -26.61 -0.14 -2.24 16 5 C -0.12 -1.77 5.35 -26.69 -0.14 -1.91 16 6 C 0.12 2.22 2.60 -67.81 -0.18 2.05 16 7 H 0.08 1.74 7.58 -51.93 -0.39 1.34 16 8 N -0.72 -10.72 5.08 -53.69 -0.27 -10.99 16 9 C 0.49 7.84 7.86 -10.99 -0.09 7.75 16 10 O -0.52 -11.15 16.09 5.55 0.09 -11.06 16 11 C 0.11 1.17 5.82 -5.19 -0.03 1.14 16 12 N -0.60 -6.75 2.28 -181.16 -0.41 -7.16 16 13 C 0.11 0.80 6.64 -4.07 -0.03 0.77 16 14 C -0.16 -0.95 6.28 -27.81 -0.17 -1.13 16 15 C 0.52 5.62 7.76 -11.03 -0.09 5.53 16 16 O -0.51 -6.98 17.93 5.59 0.10 -6.88 16 17 N -0.67 -8.18 5.18 -16.03 -0.08 -8.27 16 18 C 0.71 10.21 8.21 -87.78 -0.72 9.49 16 19 O -0.54 -10.11 16.66 5.33 0.09 -10.02 16 20 C 0.17 4.10 4.86 -3.71 -0.02 4.08 16 21 N -0.58 -14.65 2.99 -164.78 -0.49 -15.15 16 22 C -0.26 -7.13 8.61 -15.06 -0.13 -7.26 16 23 H 0.07 1.89 6.20 -52.49 -0.33 1.56 16 24 C 0.01 0.22 4.96 -17.43 -0.09 0.14 16 25 N -0.90 -27.44 11.14 55.49 0.62 -26.82 16 26 Si 0.90 23.04 29.58 -169.99 -5.03 18.01 16 27 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 28 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 29 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 30 H 0.05 1.03 7.40 -51.93 -0.38 0.65 16 31 H 0.06 1.26 7.66 -51.93 -0.40 0.86 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.39 4.26 8.60 -40.82 -0.35 3.91 16 38 H 0.11 0.59 7.82 -51.93 -0.41 0.18 16 39 H 0.12 1.25 7.43 -51.93 -0.39 0.86 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.10 0.38 7.79 -51.93 -0.40 -0.03 16 42 H 0.13 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.43 4.99 8.86 -40.82 -0.36 4.63 16 45 H 0.10 2.80 6.06 -51.93 -0.31 2.49 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 379.16 15.07 5.71 5.71 Total: -1.00 -39.41 379.16 -8.53 -47.94 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -7.09 Total: 5.41 kcal Atomic # 6 Polarization: 21.03 SS G_CDS: -1.76 Total: 19.26 kcal Atomic # 7 Polarization: -67.75 SS G_CDS: -0.64 Total: -68.39 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: 0.28 Total: -27.95 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.03 Total: 18.01 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -39.41 -8.53 -47.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071968099.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.437 kcal (2) G-P(sol) polarization free energy of solvation -39.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds