Wall clock time and date at job start Tue Mar 31 2020 21:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.58278 * 2 1 4 4 C 1.53188 * 109.58586 * 239.56964 * 2 1 3 5 5 C 1.53039 * 109.31348 * 185.57408 * 4 2 1 6 6 C 1.53050 * 109.53622 * 61.36545 * 5 4 2 7 7 H 1.09000 * 109.52309 * 178.66798 * 6 5 4 8 8 N 1.46500 * 109.49325 * 58.58718 * 6 5 4 9 9 C 1.34779 * 119.99557 * 155.16085 * 8 6 5 10 10 O 1.21277 * 120.00401 * 0.02562 * 9 8 6 11 11 C 1.50700 * 119.99528 * 179.72025 * 9 8 6 12 12 N 1.46501 * 109.46832 * 180.27796 * 11 9 8 13 13 C 1.46412 * 119.53721 * 90.00739 * 12 11 9 14 14 C 1.53033 * 109.52164 * 144.12313 * 13 12 11 15 15 C 1.50807 * 109.18681 * 46.69310 * 14 13 12 16 16 O 1.21237 * 120.01740 * 145.74879 * 15 14 13 17 17 N 1.34552 * 119.96662 * 325.76727 * 15 14 13 18 18 C 1.34291 * 119.53462 * 269.72852 * 12 11 9 19 19 O 1.21536 * 119.21310 * 5.71006 * 18 12 11 20 20 C 1.53195 * 109.31307 * 298.63754 * 6 5 4 21 21 N 1.46923 * 108.77689 * 54.63309 * 20 6 5 22 22 C 1.36934 * 120.63070 * 126.36605 * 21 20 6 23 23 H 1.07999 * 120.00088 * 209.52678 * 22 21 20 24 24 C 1.38811 * 119.99747 * 29.53481 * 22 21 20 25 25 N 1.31614 * 119.99973 * 15.61166 * 24 22 21 26 26 Si 1.86804 * 119.99858 * 195.61400 * 24 22 21 27 27 H 1.48500 * 109.47174 * 94.70183 * 26 24 22 28 28 H 1.48495 * 109.47340 * 214.70311 * 26 24 22 29 29 H 1.48506 * 109.46940 * 334.70180 * 26 24 22 30 30 H 1.09003 * 109.47055 * 299.71746 * 1 2 3 31 31 H 1.08996 * 109.47351 * 59.71990 * 1 2 3 32 32 H 1.09005 * 109.47102 * 179.72474 * 1 2 3 33 33 H 1.08998 * 109.49926 * 305.52913 * 4 2 1 34 34 H 1.09001 * 109.49762 * 65.62939 * 4 2 1 35 35 H 1.09003 * 109.46246 * 301.35411 * 5 4 2 36 36 H 1.08995 * 109.46253 * 181.38513 * 5 4 2 37 37 H 0.96996 * 120.00587 * 335.15645 * 8 6 5 38 38 H 1.09003 * 109.47644 * 300.27688 * 11 9 8 39 39 H 1.09003 * 109.47291 * 60.28530 * 11 9 8 40 40 H 1.09006 * 109.45556 * 264.13649 * 13 12 11 41 41 H 1.08995 * 109.46705 * 24.10083 * 13 12 11 42 42 H 1.09005 * 109.52310 * 166.60436 * 14 13 12 43 43 H 1.08999 * 109.51815 * 286.72369 * 14 13 12 44 44 H 0.97005 * 119.51391 * 184.41618 * 17 15 14 45 45 H 1.08999 * 109.58538 * 174.42226 * 20 6 5 46 46 H 1.08995 * 109.58660 * 294.84694 * 20 6 5 47 47 H 0.97010 * 119.99718 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7310 -1.2444 5 6 3.5675 -0.8494 -1.1691 6 6 3.9570 -1.6656 0.0657 7 1 5.0412 -1.7699 0.1062 8 7 3.3406 -2.9924 -0.0109 9 6 3.8954 -4.0319 0.6434 10 8 4.9045 -3.8688 1.2960 11 6 3.2578 -5.3954 0.5698 12 7 4.0414 -6.3444 1.3646 13 6 3.7213 -6.5372 2.7802 14 6 3.9337 -8.0052 3.1571 15 6 5.2613 -8.4695 2.6129 16 8 5.9208 -9.2776 3.2309 17 7 5.7136 -7.9862 1.4415 18 6 5.0394 -7.0293 0.7831 19 8 5.3435 -6.7739 -0.3656 20 6 3.4651 -0.9452 1.3250 21 7 2.0226 -0.6980 1.1955 22 6 1.1537 -1.1107 2.1700 23 1 0.1383 -1.3734 1.9123 24 6 1.5780 -1.1914 3.4893 25 7 2.6902 -0.5937 3.8605 26 14 0.5702 -2.1482 4.7376 27 1 1.1012 -3.5307 4.8474 28 1 0.6555 -1.4788 6.0604 29 1 -0.8473 -2.1959 4.2974 30 1 -0.3633 0.5095 0.8925 31 1 -0.3634 0.5181 -0.8874 32 1 -0.3633 -1.0277 -0.0049 33 1 1.6030 -1.7270 -1.2891 34 1 1.7661 -0.1696 -2.1366 35 1 4.0061 0.1460 -1.0994 36 1 3.9378 -1.3474 -2.0651 37 1 2.5332 -3.1228 -0.5325 38 1 2.2425 -5.3435 0.9629 39 1 3.2291 -5.7275 -0.4680 40 1 4.3715 -5.9083 3.3884 41 1 2.6815 -6.2633 2.9581 42 1 3.9293 -8.1069 4.2424 43 1 3.1330 -8.6100 2.7314 44 1 6.5366 -8.3365 1.0659 45 1 3.6519 -1.5688 2.1992 46 1 3.9903 0.0039 1.4317 47 1 2.9869 -0.6504 4.7824 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071968103.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:00 Heat of formation + Delta-G solvation = -94.142674 kcal Electronic energy + Delta-G solvation = -31353.745524 eV Core-core repulsion = 27150.472068 eV Total energy + Delta-G solvation = -4203.273456 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.75422 -40.95332 -40.03709 -39.05156 -37.26474 -35.82060 -35.61516 -34.44628 -32.78661 -32.03223 -31.67862 -28.84433 -27.65634 -26.58471 -26.05248 -24.24356 -23.82993 -22.40179 -21.84285 -20.33675 -20.10772 -19.39300 -18.86998 -18.46609 -18.10429 -17.46039 -17.17593 -16.75951 -16.16834 -16.12377 -15.80776 -15.72813 -15.51458 -15.49850 -15.29735 -14.87325 -14.57517 -14.46882 -14.18792 -13.97462 -13.65813 -13.54238 -13.03385 -12.91819 -12.79789 -12.57210 -12.56339 -12.48663 -12.35449 -12.04397 -11.98762 -11.88600 -11.53381 -11.41271 -11.40095 -11.19717 -11.09883 -10.99265 -10.46698 -9.92922 -9.85474 -8.51669 -7.74364 -5.21090 0.62044 1.19262 1.48628 1.52253 1.60903 1.81731 1.91857 2.14455 2.51845 2.58894 3.34262 3.41114 3.57952 3.68184 3.86879 3.98859 4.05920 4.11570 4.14750 4.22681 4.37758 4.41478 4.52852 4.55324 4.69635 4.77768 4.80570 4.86959 4.91207 5.00998 5.04032 5.09346 5.14754 5.16183 5.31530 5.36340 5.41549 5.61947 5.66528 5.76057 5.79392 5.81441 6.24785 6.38799 6.50693 6.76125 7.00790 7.24939 7.47413 7.98807 8.51776 9.31311 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012300 B = 0.004130 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.824636 B = 6778.358898 C = 8294.836853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.153 3.847 3 H 0.006 0.994 4 C -0.116 4.116 5 C -0.112 4.112 6 C 0.131 3.869 7 H 0.053 0.947 8 N -0.689 5.689 9 C 0.488 3.512 10 O -0.589 6.589 11 C 0.115 3.885 12 N -0.593 5.593 13 C 0.103 3.897 14 C -0.143 4.143 15 C 0.525 3.475 16 O -0.538 6.538 17 N -0.672 5.672 18 C 0.715 3.285 19 O -0.590 6.590 20 C 0.177 3.823 21 N -0.593 5.593 22 C -0.235 4.235 23 H 0.081 0.919 24 C -0.057 4.057 25 N -0.942 5.942 26 Si 0.954 3.046 27 H -0.278 1.278 28 H -0.312 1.312 29 H -0.262 1.262 30 H 0.033 0.967 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.410 0.590 38 H 0.152 0.848 39 H 0.132 0.868 40 H 0.057 0.943 41 H 0.132 0.868 42 H 0.146 0.854 43 H 0.149 0.851 44 H 0.426 0.574 45 H 0.050 0.950 46 H -0.014 1.014 47 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.954 -11.986 -9.402 16.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.047 3.953 3 H 0.023 0.977 4 C -0.155 4.155 5 C -0.150 4.150 6 C 0.024 3.976 7 H 0.071 0.929 8 N -0.341 5.341 9 C 0.274 3.726 10 O -0.470 6.470 11 C -0.011 4.011 12 N -0.328 5.328 13 C -0.018 4.018 14 C -0.182 4.182 15 C 0.316 3.684 16 O -0.413 6.413 17 N -0.340 5.340 18 C 0.416 3.584 19 O -0.467 6.467 20 C 0.050 3.950 21 N -0.317 5.317 22 C -0.366 4.366 23 H 0.099 0.901 24 C -0.252 4.252 25 N -0.589 5.589 26 Si 0.783 3.217 27 H -0.204 1.204 28 H -0.240 1.240 29 H -0.186 1.186 30 H 0.052 0.948 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.247 0.753 38 H 0.170 0.830 39 H 0.150 0.850 40 H 0.075 0.925 41 H 0.150 0.850 42 H 0.164 0.836 43 H 0.167 0.833 44 H 0.268 0.732 45 H 0.069 0.931 46 H 0.004 0.996 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -3.903 -12.064 -8.988 15.542 hybrid contribution 0.469 0.111 1.058 1.163 sum -3.434 -11.953 -7.930 14.750 Atomic orbital electron populations 1.21715 0.94426 1.01692 1.00616 1.20767 0.94321 0.92926 0.87243 0.97659 1.21934 0.94247 1.01405 0.97932 1.21655 0.97685 0.99576 0.96042 1.21373 0.95764 0.82969 0.97502 0.92915 1.45659 1.29856 1.07634 1.50907 1.21695 0.84477 0.88010 0.78468 1.90669 1.27542 1.85800 1.42973 1.21532 0.95670 0.83921 0.99983 1.46636 1.33686 1.40612 1.11820 1.21886 1.05172 0.95588 0.79198 1.22345 0.93451 0.96245 1.06205 1.21629 0.88938 0.79117 0.78757 1.90775 1.59172 1.33876 1.57490 1.44215 1.28387 1.37808 1.23588 1.15638 0.79500 0.79105 0.84147 1.90956 1.67957 1.69947 1.17871 1.20775 0.84263 0.94822 0.95154 1.44273 1.02095 1.65481 1.19830 1.19478 0.95305 1.35574 0.86217 0.90105 1.25835 0.98917 1.01319 0.99085 1.70214 1.26264 1.46281 1.16133 0.85439 0.79245 0.78775 0.78227 1.20414 1.24017 1.18622 0.94788 0.90948 0.92288 0.91022 0.89538 0.91619 0.90002 0.75258 0.83009 0.85028 0.92478 0.84989 0.83638 0.83337 0.73220 0.93137 0.99605 0.95061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.92 7.95 71.98 0.57 -3.35 16 2 C 0.15 5.41 3.50 44.97 0.16 5.57 16 3 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 4 C -0.12 -3.02 5.21 30.67 0.16 -2.86 16 5 C -0.11 -3.15 5.59 30.62 0.17 -2.97 16 6 C 0.13 4.80 2.81 45.07 0.13 4.93 16 7 H 0.05 2.16 7.58 -2.39 -0.02 2.14 16 8 N -0.69 -21.58 4.92 -442.14 -2.17 -23.75 16 9 C 0.49 16.46 7.86 87.66 0.69 17.15 16 10 O -0.59 -26.11 16.09 -3.02 -0.05 -26.16 16 11 C 0.12 2.59 5.82 85.63 0.50 3.09 16 12 N -0.59 -14.00 2.28 -845.64 -1.93 -15.93 16 13 C 0.10 1.93 6.64 86.41 0.57 2.51 16 14 C -0.14 -1.92 6.28 29.89 0.19 -1.73 16 15 C 0.53 11.29 7.76 87.73 0.68 11.97 16 16 O -0.54 -14.83 17.93 -2.90 -0.05 -14.88 16 17 N -0.67 -15.56 5.18 -441.70 -2.29 -17.85 16 18 C 0.71 19.40 8.21 179.35 1.47 20.87 16 19 O -0.59 -19.77 16.65 -3.83 -0.06 -19.84 16 20 C 0.18 8.39 4.89 86.36 0.42 8.81 16 21 N -0.59 -26.47 2.91 -675.23 -1.96 -28.43 16 22 C -0.24 -11.46 8.58 84.03 0.72 -10.74 16 23 H 0.08 3.70 6.23 -2.91 -0.02 3.68 16 24 C -0.06 -3.01 4.94 84.86 0.42 -2.60 16 25 N -0.94 -55.55 11.21 21.65 0.24 -55.30 16 26 Si 0.95 41.74 29.58 68.60 2.03 43.77 16 27 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 28 H -0.31 -14.59 7.11 99.48 0.71 -13.88 16 29 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 30 H 0.03 1.21 7.62 -2.39 -0.02 1.19 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.06 1.74 7.44 -2.38 -0.02 1.72 16 33 H 0.07 1.67 6.40 -2.39 -0.02 1.66 16 34 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.41 10.16 6.77 -92.71 -0.63 9.53 16 38 H 0.15 2.32 7.82 -2.39 -0.02 2.30 16 39 H 0.13 2.53 7.43 -2.39 -0.02 2.52 16 40 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 41 H 0.13 1.81 7.79 -2.39 -0.02 1.79 16 42 H 0.15 1.50 8.14 -2.38 -0.02 1.48 16 43 H 0.15 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.43 9.19 8.86 -92.70 -0.82 8.37 16 45 H 0.05 2.86 6.12 -2.39 -0.01 2.84 16 46 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 47 H 0.24 14.13 8.31 -92.70 -0.77 13.36 16 Total: -1.00 -80.72 375.76 0.17 -80.54 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: -0.43 Total: 27.20 kcal Atomic # 6 Polarization: 43.79 SS G_CDS: 6.85 Total: 50.64 kcal Atomic # 7 Polarization: -133.15 SS G_CDS: -8.11 Total: -141.27 kcal Atomic # 8 Polarization: -60.72 SS G_CDS: -0.16 Total: -60.88 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -80.72 0.17 -80.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071968103.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.599 kcal (2) G-P(sol) polarization free energy of solvation -80.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds