Wall clock time and date at job start Tue Mar 31 2020 21:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.70452 * 2 1 4 4 C 1.53195 * 109.59043 * 120.35793 * 2 1 3 5 5 C 1.53038 * 109.31122 * 174.42161 * 4 2 1 6 6 C 1.53042 * 109.52873 * 298.64008 * 5 4 2 7 7 H 1.08998 * 109.49716 * 181.31048 * 6 5 4 8 8 N 1.46498 * 109.49701 * 301.41025 * 6 5 4 9 9 C 1.34775 * 119.99678 * 204.99895 * 8 6 5 10 10 O 1.21280 * 120.00458 * 0.02562 * 9 8 6 11 11 C 1.50705 * 119.99813 * 180.02562 * 9 8 6 12 12 N 1.46500 * 109.47135 * 179.97438 * 11 9 8 13 13 C 1.46406 * 119.53376 * 269.72239 * 12 11 9 14 14 C 1.53349 * 109.35069 * 144.04935 * 13 12 11 15 15 C 1.50812 * 109.08784 * 46.99265 * 14 13 12 16 16 O 1.21235 * 120.01925 * 145.63642 * 15 14 13 17 17 N 1.34559 * 119.96742 * 325.61649 * 15 14 13 18 18 C 1.34291 * 119.53707 * 89.99837 * 12 11 9 19 19 O 1.21537 * 119.20580 * 5.64607 * 18 12 11 20 20 C 1.53170 * 109.32522 * 61.37314 * 6 5 4 21 21 N 1.46921 * 108.76894 * 305.35555 * 20 6 5 22 22 C 1.36939 * 120.63103 * 233.63062 * 21 20 6 23 23 H 1.07997 * 119.99810 * 150.86408 * 22 21 20 24 24 C 1.38807 * 119.99861 * 330.85880 * 22 21 20 25 25 N 1.31621 * 120.00044 * 160.75341 * 24 22 21 26 26 Si 1.86799 * 120.00109 * 340.75977 * 24 22 21 27 27 H 1.48502 * 109.47406 * 92.25926 * 26 24 22 28 28 H 1.48504 * 109.47139 * 212.26067 * 26 24 22 29 29 H 1.48494 * 109.47265 * 332.25795 * 26 24 22 30 30 H 1.09000 * 109.46934 * 299.63994 * 1 2 3 31 31 H 1.08999 * 109.47410 * 59.64246 * 1 2 3 32 32 H 1.09000 * 109.47234 * 179.64511 * 1 2 3 33 33 H 1.08994 * 109.49281 * 54.46760 * 4 2 1 34 34 H 1.08999 * 109.49519 * 294.36943 * 4 2 1 35 35 H 1.08995 * 109.46256 * 58.65672 * 5 4 2 36 36 H 1.09001 * 109.45795 * 178.62576 * 5 4 2 37 37 H 0.97002 * 119.99968 * 25.00282 * 8 6 5 38 38 H 1.09005 * 109.47076 * 299.99655 * 11 9 8 39 39 H 1.09005 * 109.47466 * 59.99584 * 11 9 8 40 40 H 1.09005 * 109.46358 * 264.18113 * 13 12 11 41 41 H 1.09002 * 109.46525 * 24.15537 * 13 12 11 42 42 H 1.09001 * 109.69242 * 287.03548 * 14 13 12 43 43 H 1.08998 * 109.44248 * 166.80038 * 14 13 12 44 44 H 0.96997 * 119.51261 * 184.40903 * 17 15 14 45 45 H 1.08998 * 109.58355 * 185.56822 * 20 6 5 46 46 H 1.09001 * 109.70542 * 65.21576 * 20 6 5 47 47 H 0.96998 * 120.00161 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 1.2454 5 6 3.5676 -0.8480 1.1700 6 6 3.9567 -1.6656 -0.0639 7 1 5.0409 -1.7694 -0.1044 8 7 3.3403 -2.9923 0.0144 9 6 3.8967 -4.0332 -0.6362 10 8 4.9079 -3.8717 -1.2861 11 6 3.2623 -5.3979 -0.5562 12 7 4.0505 -6.3497 -1.3431 13 6 3.7311 -6.5562 -2.7569 14 6 5.0278 -6.7872 -3.5422 15 6 5.8773 -7.7930 -2.8066 16 8 6.5652 -8.5752 -3.4270 17 7 5.8718 -7.8216 -1.4614 18 6 5.0521 -7.0245 -0.7560 19 8 5.2214 -6.9111 0.4421 20 6 3.4649 -0.9468 -1.3239 21 7 2.0225 -0.6995 -1.1946 22 6 1.1535 -1.1134 -2.1686 23 1 0.1364 -1.3697 -1.9115 24 6 1.5800 -1.2034 -3.4865 25 7 0.9072 -1.9376 -4.3472 26 14 3.1087 -0.2827 -4.0385 27 1 4.2943 -1.1671 -3.9055 28 1 2.9540 0.1279 -5.4572 29 1 3.2932 0.9230 -3.1916 30 1 -0.3633 0.5082 0.8932 31 1 -0.3634 0.5194 -0.8867 32 1 -0.3634 -1.0276 -0.0064 33 1 1.6030 -1.7253 1.2912 34 1 1.7662 -0.1669 2.1368 35 1 4.0062 0.1473 1.0992 36 1 3.9379 -1.3450 2.0666 37 1 2.5317 -3.1215 0.5345 38 1 3.2310 -5.7236 0.4836 39 1 2.2481 -5.3510 -0.9529 40 1 3.0809 -7.4251 -2.8592 41 1 3.2227 -5.6744 -3.1470 42 1 5.5733 -5.8482 -3.6349 43 1 4.7878 -7.1695 -4.5344 44 1 6.4682 -8.4271 -0.9939 45 1 3.6518 -1.5716 -2.1973 46 1 3.9900 0.0020 -1.4344 47 1 1.2050 -2.0002 -5.2682 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071968106.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:11 Heat of formation + Delta-G solvation = -64.112516 kcal Electronic energy + Delta-G solvation = -31553.268273 eV Core-core repulsion = 27351.297022 eV Total energy + Delta-G solvation = -4201.971251 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.72224 -39.77547 -38.94431 -37.83122 -36.17220 -34.72146 -34.26032 -32.81223 -31.73323 -30.86240 -30.76741 -27.79317 -26.28378 -25.13122 -24.88948 -23.22080 -22.73738 -21.17201 -20.41336 -19.15923 -18.99308 -18.37515 -17.84069 -17.25033 -16.60971 -16.53941 -15.75283 -15.56919 -15.01299 -14.94997 -14.71713 -14.61861 -14.51666 -14.20678 -13.78075 -13.56494 -13.54742 -13.27576 -13.02500 -12.70417 -12.62823 -12.15497 -12.02291 -11.83532 -11.64719 -11.57182 -11.32591 -11.02180 -10.75937 -10.60270 -10.48665 -10.36644 -10.35207 -10.32626 -10.01944 -9.90960 -9.72724 -9.43311 -8.85292 -8.77801 -8.46788 -6.96107 -6.00188 -3.36899 1.62676 2.22549 2.95044 2.99867 3.04755 3.34506 3.47382 3.47971 3.66981 4.25590 4.44791 4.50452 4.82349 4.83233 4.91676 5.01529 5.15726 5.24492 5.26706 5.30535 5.34383 5.41036 5.41751 5.62686 5.72344 5.84217 5.89799 5.94056 5.99910 6.07309 6.18116 6.20579 6.26734 6.34307 6.38592 6.44072 6.45694 6.65220 6.89510 6.95620 6.99515 7.24828 7.38049 7.87419 7.93837 8.05409 8.29056 8.60274 8.89268 9.68702 10.06499 11.15054 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013373 B = 0.004181 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.252324 B = 6695.598141 C = 7839.150462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.169 3.831 3 H 0.029 0.971 4 C -0.131 4.131 5 C -0.120 4.120 6 C 0.130 3.870 7 H 0.078 0.922 8 N -0.698 5.698 9 C 0.500 3.500 10 O -0.544 6.544 11 C 0.108 3.892 12 N -0.594 5.594 13 C 0.110 3.890 14 C -0.158 4.158 15 C 0.528 3.472 16 O -0.510 6.510 17 N -0.675 5.675 18 C 0.717 3.283 19 O -0.560 6.560 20 C 0.116 3.884 21 N -0.599 5.599 22 C -0.255 4.255 23 H 0.091 0.909 24 C 0.028 3.972 25 N -0.909 5.909 26 Si 0.874 3.126 27 H -0.286 1.286 28 H -0.305 1.305 29 H -0.273 1.273 30 H 0.039 0.961 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.399 0.601 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.080 0.920 41 H 0.111 0.889 42 H 0.121 0.879 43 H 0.126 0.874 44 H 0.423 0.577 45 H 0.080 0.920 46 H 0.030 0.970 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.360 -6.426 8.754 11.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.063 3.937 3 H 0.047 0.953 4 C -0.170 4.170 5 C -0.158 4.158 6 C 0.024 3.976 7 H 0.096 0.904 8 N -0.349 5.349 9 C 0.284 3.716 10 O -0.421 6.421 11 C -0.018 4.018 12 N -0.330 5.330 13 C -0.013 4.013 14 C -0.198 4.198 15 C 0.317 3.683 16 O -0.382 6.382 17 N -0.343 5.343 18 C 0.418 3.582 19 O -0.436 6.436 20 C -0.011 4.011 21 N -0.323 5.323 22 C -0.383 4.383 23 H 0.108 0.892 24 C -0.170 4.170 25 N -0.552 5.552 26 Si 0.705 3.295 27 H -0.214 1.214 28 H -0.233 1.233 29 H -0.198 1.198 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.234 0.766 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.098 0.902 41 H 0.129 0.871 42 H 0.139 0.861 43 H 0.144 0.856 44 H 0.264 0.736 45 H 0.098 0.902 46 H 0.048 0.952 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.360 -6.574 8.301 11.109 hybrid contribution 0.829 0.374 -0.178 0.927 sum 4.189 -6.199 8.123 11.044 Atomic orbital electron populations 1.21797 0.95286 1.01833 1.00395 1.20488 0.93543 0.93434 0.86277 0.95332 1.22060 0.94891 1.01086 0.99006 1.21696 0.97229 1.00071 0.96767 1.21437 0.97111 0.82117 0.96968 0.90359 1.45734 1.29595 1.08192 1.51422 1.20859 0.84870 0.86501 0.79329 1.90667 1.25190 1.85064 1.41174 1.21369 0.95201 0.86253 0.99001 1.46552 1.33002 1.42074 1.11336 1.21779 0.96079 1.04436 0.78965 1.22318 0.96423 1.00335 1.00767 1.21074 0.81652 0.83881 0.81730 1.90770 1.41235 1.39571 1.66661 1.44230 1.40076 1.41623 1.08397 1.15509 0.79364 0.78302 0.84980 1.90970 1.73019 1.66678 1.12898 1.21738 0.85687 0.97061 0.96608 1.44409 1.01696 1.65592 1.20637 1.18863 0.95569 1.38266 0.85622 0.89161 1.25262 0.97261 0.98689 0.95832 1.69801 1.41236 1.39664 1.04549 0.87079 0.83932 0.81566 0.76927 1.21358 1.23348 1.19774 0.94180 0.91835 0.92460 0.92146 0.92359 0.91057 0.92308 0.76561 0.86521 0.86154 0.90178 0.87073 0.86101 0.85633 0.73604 0.90205 0.95234 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 7.95 37.16 0.30 -1.91 16 2 C 0.17 2.90 3.50 -67.60 -0.24 2.67 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -1.78 5.21 -26.61 -0.14 -1.92 16 5 C -0.12 -1.62 5.59 -26.69 -0.15 -1.77 16 6 C 0.13 2.18 2.81 -67.82 -0.19 1.99 16 7 H 0.08 1.38 7.58 -51.93 -0.39 0.98 16 8 N -0.70 -10.84 4.91 -53.70 -0.26 -11.10 16 9 C 0.50 8.27 7.86 -10.98 -0.09 8.18 16 10 O -0.54 -10.97 16.09 5.56 0.09 -10.88 16 11 C 0.11 1.37 5.84 -5.19 -0.03 1.34 16 12 N -0.59 -7.60 2.28 -180.96 -0.41 -8.02 16 13 C 0.11 1.17 6.60 -3.91 -0.03 1.14 16 14 C -0.16 -1.69 6.30 -27.65 -0.17 -1.87 16 15 C 0.53 6.56 7.76 -11.03 -0.09 6.47 16 16 O -0.51 -7.59 17.93 5.60 0.10 -7.49 16 17 N -0.67 -8.21 5.18 -16.02 -0.08 -8.29 16 18 C 0.72 10.08 8.22 -87.74 -0.72 9.36 16 19 O -0.56 -9.36 16.57 5.33 0.09 -9.27 16 20 C 0.12 2.40 3.80 -3.72 -0.01 2.38 16 21 N -0.60 -12.60 2.66 -164.79 -0.44 -13.04 16 22 C -0.26 -6.34 9.05 -15.06 -0.14 -6.47 16 23 H 0.09 2.37 6.38 -52.49 -0.34 2.03 16 24 C 0.03 0.76 5.24 -17.43 -0.09 0.67 16 25 N -0.91 -25.86 13.97 55.49 0.78 -25.08 16 26 Si 0.87 21.90 24.34 -169.99 -4.14 17.77 16 27 H -0.29 -7.25 6.63 56.52 0.37 -6.88 16 28 H -0.31 -7.87 7.11 56.52 0.40 -7.46 16 29 H -0.27 -6.75 6.63 56.52 0.37 -6.38 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 1.16 7.66 -51.93 -0.40 0.76 16 32 H 0.06 0.96 7.40 -51.93 -0.38 0.57 16 33 H 0.06 0.80 6.40 -51.93 -0.33 0.47 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.40 5.35 6.77 -40.82 -0.28 5.07 16 38 H 0.12 1.34 7.27 -51.93 -0.38 0.96 16 39 H 0.12 1.28 8.06 -51.93 -0.42 0.86 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.11 1.30 8.01 -51.93 -0.42 0.88 16 42 H 0.12 1.45 8.14 -51.93 -0.42 1.03 16 43 H 0.13 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.42 4.49 8.86 -40.82 -0.36 4.13 16 45 H 0.08 1.92 4.62 -51.93 -0.24 1.68 16 46 H 0.03 0.63 7.02 -51.93 -0.36 0.26 16 47 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 369.50 15.07 5.57 5.57 Total: -1.00 -34.23 369.50 -7.37 -41.60 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -6.87 Total: 7.97 kcal Atomic # 6 Polarization: 22.05 SS G_CDS: -1.78 Total: 20.26 kcal Atomic # 7 Polarization: -65.10 SS G_CDS: -0.42 Total: -65.53 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: 0.28 Total: -27.64 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.14 Total: 17.77 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.23 -7.37 -41.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071968106.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.514 kcal (2) G-P(sol) polarization free energy of solvation -34.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds