Wall clock time and date at job start Tue Mar 31 2020 21:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.70452 * 2 1 4 4 C 1.53195 * 109.59043 * 120.35793 * 2 1 3 5 5 C 1.53038 * 109.31122 * 174.42161 * 4 2 1 6 6 C 1.53042 * 109.52873 * 298.64008 * 5 4 2 7 7 H 1.08998 * 109.49716 * 181.31048 * 6 5 4 8 8 N 1.46498 * 109.49701 * 301.41025 * 6 5 4 9 9 C 1.34775 * 119.99678 * 204.99895 * 8 6 5 10 10 O 1.21280 * 120.00458 * 0.02562 * 9 8 6 11 11 C 1.50705 * 119.99813 * 180.02562 * 9 8 6 12 12 N 1.46500 * 109.47135 * 179.97438 * 11 9 8 13 13 C 1.46406 * 119.53376 * 269.72239 * 12 11 9 14 14 C 1.53349 * 109.35069 * 144.04935 * 13 12 11 15 15 C 1.50812 * 109.08784 * 46.99265 * 14 13 12 16 16 O 1.21235 * 120.01925 * 145.63642 * 15 14 13 17 17 N 1.34559 * 119.96742 * 325.61649 * 15 14 13 18 18 C 1.34291 * 119.53707 * 89.99837 * 12 11 9 19 19 O 1.21537 * 119.20580 * 5.64607 * 18 12 11 20 20 C 1.53170 * 109.32522 * 61.37314 * 6 5 4 21 21 N 1.46921 * 108.76894 * 305.35555 * 20 6 5 22 22 C 1.36939 * 120.63103 * 233.63062 * 21 20 6 23 23 H 1.07997 * 119.99810 * 150.86408 * 22 21 20 24 24 C 1.38807 * 119.99861 * 330.85880 * 22 21 20 25 25 N 1.31621 * 120.00044 * 160.75341 * 24 22 21 26 26 Si 1.86799 * 120.00109 * 340.75977 * 24 22 21 27 27 H 1.48502 * 109.47406 * 92.25926 * 26 24 22 28 28 H 1.48504 * 109.47139 * 212.26067 * 26 24 22 29 29 H 1.48494 * 109.47265 * 332.25795 * 26 24 22 30 30 H 1.09000 * 109.46934 * 299.63994 * 1 2 3 31 31 H 1.08999 * 109.47410 * 59.64246 * 1 2 3 32 32 H 1.09000 * 109.47234 * 179.64511 * 1 2 3 33 33 H 1.08994 * 109.49281 * 54.46760 * 4 2 1 34 34 H 1.08999 * 109.49519 * 294.36943 * 4 2 1 35 35 H 1.08995 * 109.46256 * 58.65672 * 5 4 2 36 36 H 1.09001 * 109.45795 * 178.62576 * 5 4 2 37 37 H 0.97002 * 119.99968 * 25.00282 * 8 6 5 38 38 H 1.09005 * 109.47076 * 299.99655 * 11 9 8 39 39 H 1.09005 * 109.47466 * 59.99584 * 11 9 8 40 40 H 1.09005 * 109.46358 * 264.18113 * 13 12 11 41 41 H 1.09002 * 109.46525 * 24.15537 * 13 12 11 42 42 H 1.09001 * 109.69242 * 287.03548 * 14 13 12 43 43 H 1.08998 * 109.44248 * 166.80038 * 14 13 12 44 44 H 0.96997 * 119.51261 * 184.40903 * 17 15 14 45 45 H 1.08998 * 109.58355 * 185.56822 * 20 6 5 46 46 H 1.09001 * 109.70542 * 65.21576 * 20 6 5 47 47 H 0.96998 * 120.00161 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 1.2454 5 6 3.5676 -0.8480 1.1700 6 6 3.9567 -1.6656 -0.0639 7 1 5.0409 -1.7694 -0.1044 8 7 3.3403 -2.9923 0.0144 9 6 3.8967 -4.0332 -0.6362 10 8 4.9079 -3.8717 -1.2861 11 6 3.2623 -5.3979 -0.5562 12 7 4.0505 -6.3497 -1.3431 13 6 3.7311 -6.5562 -2.7569 14 6 5.0278 -6.7872 -3.5422 15 6 5.8773 -7.7930 -2.8066 16 8 6.5652 -8.5752 -3.4270 17 7 5.8718 -7.8216 -1.4614 18 6 5.0521 -7.0245 -0.7560 19 8 5.2214 -6.9111 0.4421 20 6 3.4649 -0.9468 -1.3239 21 7 2.0225 -0.6995 -1.1946 22 6 1.1535 -1.1134 -2.1686 23 1 0.1364 -1.3697 -1.9115 24 6 1.5800 -1.2034 -3.4865 25 7 0.9072 -1.9376 -4.3472 26 14 3.1087 -0.2827 -4.0385 27 1 4.2943 -1.1671 -3.9055 28 1 2.9540 0.1279 -5.4572 29 1 3.2932 0.9230 -3.1916 30 1 -0.3633 0.5082 0.8932 31 1 -0.3634 0.5194 -0.8867 32 1 -0.3634 -1.0276 -0.0064 33 1 1.6030 -1.7253 1.2912 34 1 1.7662 -0.1669 2.1368 35 1 4.0062 0.1473 1.0992 36 1 3.9379 -1.3450 2.0666 37 1 2.5317 -3.1215 0.5345 38 1 3.2310 -5.7236 0.4836 39 1 2.2481 -5.3510 -0.9529 40 1 3.0809 -7.4251 -2.8592 41 1 3.2227 -5.6744 -3.1470 42 1 5.5733 -5.8482 -3.6349 43 1 4.7878 -7.1695 -4.5344 44 1 6.4682 -8.4271 -0.9939 45 1 3.6518 -1.5716 -2.1973 46 1 3.9900 0.0020 -1.4344 47 1 1.2050 -2.0002 -5.2682 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071968106.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:10 Heat of formation + Delta-G solvation = -90.553554 kcal Electronic energy + Delta-G solvation = -31554.414843 eV Core-core repulsion = 27351.297022 eV Total energy + Delta-G solvation = -4203.117820 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.77448 -41.08068 -40.10230 -39.21630 -37.25845 -35.87759 -35.67940 -34.46408 -32.83457 -32.51162 -32.06737 -28.91563 -27.76727 -26.48120 -26.07946 -24.44624 -24.14944 -22.40399 -21.82374 -20.47975 -20.17063 -19.39269 -18.92449 -18.46802 -18.28300 -17.70494 -17.22099 -16.94591 -16.39393 -16.25905 -15.95475 -15.77902 -15.69365 -15.43389 -15.22266 -15.07603 -14.75617 -14.39409 -14.32897 -14.24747 -13.83123 -13.64766 -13.42289 -13.20733 -12.99005 -12.64992 -12.59447 -12.49600 -12.34394 -12.10415 -11.87965 -11.78145 -11.62404 -11.44804 -11.41922 -11.34659 -11.16335 -11.07832 -10.66044 -9.98345 -9.92296 -8.75584 -8.08647 -5.36919 0.57481 1.21730 1.30396 1.39037 1.42365 1.71776 1.90758 2.03046 2.45223 2.49229 3.13159 3.30253 3.36277 3.53636 3.80431 3.95353 3.98588 4.04986 4.05750 4.15150 4.34429 4.38924 4.41425 4.52561 4.57223 4.60989 4.69968 4.76174 4.83035 4.88393 4.90926 5.00334 5.06330 5.07498 5.14194 5.23237 5.31503 5.39080 5.57052 5.64595 5.67469 5.99661 6.22489 6.27263 6.34872 6.66322 6.98868 7.01550 7.35721 7.73661 8.15561 9.10109 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013373 B = 0.004181 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.252324 B = 6695.598141 C = 7839.150462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.158 3.842 3 H 0.030 0.970 4 C -0.121 4.121 5 C -0.112 4.112 6 C 0.135 3.865 7 H 0.068 0.932 8 N -0.691 5.691 9 C 0.491 3.509 10 O -0.586 6.586 11 C 0.113 3.887 12 N -0.594 5.594 13 C 0.109 3.891 14 C -0.154 4.154 15 C 0.534 3.466 16 O -0.534 6.534 17 N -0.668 5.668 18 C 0.716 3.284 19 O -0.589 6.589 20 C 0.116 3.884 21 N -0.607 5.607 22 C -0.217 4.217 23 H 0.079 0.921 24 C -0.021 4.021 25 N -0.947 5.947 26 Si 0.917 3.083 27 H -0.299 1.299 28 H -0.319 1.319 29 H -0.269 1.269 30 H 0.077 0.923 31 H 0.034 0.966 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.412 0.588 38 H 0.134 0.866 39 H 0.144 0.856 40 H 0.113 0.887 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.151 0.849 44 H 0.429 0.571 45 H 0.042 0.958 46 H 0.023 0.977 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.618 -6.414 11.367 13.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.053 3.947 3 H 0.048 0.952 4 C -0.159 4.159 5 C -0.149 4.149 6 C 0.028 3.972 7 H 0.086 0.914 8 N -0.343 5.343 9 C 0.276 3.724 10 O -0.467 6.467 11 C -0.013 4.013 12 N -0.329 5.329 13 C -0.013 4.013 14 C -0.194 4.194 15 C 0.324 3.676 16 O -0.408 6.408 17 N -0.336 5.336 18 C 0.418 3.582 19 O -0.467 6.467 20 C -0.011 4.011 21 N -0.332 5.332 22 C -0.346 4.346 23 H 0.096 0.904 24 C -0.216 4.216 25 N -0.595 5.595 26 Si 0.750 3.250 27 H -0.227 1.227 28 H -0.249 1.249 29 H -0.194 1.194 30 H 0.096 0.904 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.249 0.751 38 H 0.151 0.849 39 H 0.162 0.838 40 H 0.131 0.869 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.168 0.832 44 H 0.271 0.729 45 H 0.060 0.940 46 H 0.040 0.960 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.603 -6.533 10.970 13.030 hybrid contribution 1.048 0.436 -0.914 1.457 sum 3.651 -6.097 10.056 12.313 Atomic orbital electron populations 1.21736 0.94548 1.01510 1.00906 1.20822 0.94247 0.93585 0.86026 0.95244 1.21966 0.94499 1.01465 0.98002 1.21684 0.97415 1.00021 0.95822 1.21270 0.96510 0.82797 0.96608 0.91439 1.45707 1.29901 1.07597 1.51118 1.21626 0.84388 0.87992 0.78354 1.90649 1.27175 1.85917 1.42949 1.21478 0.95625 0.83932 1.00278 1.46693 1.32572 1.41465 1.12150 1.21957 0.96297 1.05353 0.77677 1.22345 0.96029 0.99121 1.01914 1.21286 0.81181 0.83554 0.81570 1.90764 1.42362 1.40701 1.67015 1.44148 1.39765 1.41326 1.08401 1.15614 0.79530 0.78341 0.84709 1.90945 1.73822 1.67777 1.14112 1.21624 0.85570 0.96497 0.97401 1.44560 1.01377 1.66183 1.21089 1.18875 0.95262 1.34675 0.85829 0.90389 1.25634 0.98798 1.00509 0.96631 1.69871 1.42860 1.42159 1.04590 0.86392 0.82123 0.80719 0.75761 1.22724 1.24850 1.19438 0.90427 0.94669 0.93104 0.91409 0.88881 0.90396 0.89509 0.75078 0.84865 0.83800 0.86856 0.88115 0.87667 0.83162 0.72921 0.93960 0.95954 0.93532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.86 7.95 71.98 0.57 -3.28 16 2 C 0.16 4.96 3.50 44.97 0.16 5.12 16 3 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 4 C -0.12 -2.72 5.21 30.67 0.16 -2.56 16 5 C -0.11 -2.59 5.59 30.62 0.17 -2.42 16 6 C 0.14 4.31 2.81 45.06 0.13 4.44 16 7 H 0.07 2.33 7.58 -2.39 -0.02 2.31 16 8 N -0.69 -20.21 4.91 -442.20 -2.17 -22.38 16 9 C 0.49 15.79 7.86 87.66 0.69 16.48 16 10 O -0.59 -23.91 16.09 -3.03 -0.05 -23.96 16 11 C 0.11 2.67 5.84 85.63 0.50 3.17 16 12 N -0.59 -14.46 2.28 -844.98 -1.93 -16.38 16 13 C 0.11 2.17 6.60 86.51 0.57 2.74 16 14 C -0.15 -3.18 6.30 30.00 0.19 -2.99 16 15 C 0.53 12.89 7.76 87.73 0.68 13.57 16 16 O -0.53 -15.59 17.93 -2.89 -0.05 -15.64 16 17 N -0.67 -15.80 5.18 -441.64 -2.29 -18.08 16 18 C 0.72 19.48 8.22 179.34 1.47 20.95 16 19 O -0.59 -19.14 16.57 -3.83 -0.06 -19.21 16 20 C 0.12 4.73 3.80 86.36 0.33 5.06 16 21 N -0.61 -24.81 2.66 -675.27 -1.80 -26.61 16 22 C -0.22 -10.72 9.05 84.03 0.76 -9.96 16 23 H 0.08 4.07 6.38 -2.91 -0.02 4.05 16 24 C -0.02 -1.15 5.24 84.86 0.44 -0.70 16 25 N -0.95 -55.15 13.97 21.65 0.30 -54.85 16 26 Si 0.92 46.70 24.34 68.60 1.67 48.37 16 27 H -0.30 -15.62 6.63 99.48 0.66 -14.96 16 28 H -0.32 -16.75 7.11 99.48 0.71 -16.04 16 29 H -0.27 -13.29 6.63 99.48 0.66 -12.63 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.03 1.23 7.66 -2.39 -0.02 1.21 16 32 H 0.05 1.57 7.40 -2.39 -0.02 1.55 16 33 H 0.07 1.47 6.40 -2.39 -0.02 1.45 16 34 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.41 9.80 6.77 -92.71 -0.63 9.17 16 38 H 0.13 2.73 7.27 -2.38 -0.02 2.72 16 39 H 0.14 2.72 8.06 -2.38 -0.02 2.70 16 40 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 41 H 0.10 2.29 8.01 -2.39 -0.02 2.27 16 42 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 43 H 0.15 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.43 8.90 8.86 -92.71 -0.82 8.08 16 45 H 0.04 2.07 4.62 -2.39 -0.01 2.06 16 46 H 0.02 0.95 7.02 -2.39 -0.02 0.93 16 47 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -76.45 369.50 -0.08 -76.52 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: -0.52 Total: 22.62 kcal Atomic # 6 Polarization: 42.78 SS G_CDS: 6.82 Total: 49.60 kcal Atomic # 7 Polarization: -130.42 SS G_CDS: -7.88 Total: -138.31 kcal Atomic # 8 Polarization: -58.64 SS G_CDS: -0.16 Total: -58.81 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 1.67 Total: 48.37 kcal Total: -76.45 -0.08 -76.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071968106.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.032 kcal (2) G-P(sol) polarization free energy of solvation -76.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds