Wall clock time and date at job start Tue Mar 31 2020 21:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.70342 * 2 1 4 4 C 1.53194 * 109.58433 * 239.64862 * 2 1 3 5 5 C 1.53044 * 109.31373 * 185.57617 * 4 2 1 6 6 C 1.53040 * 109.53661 * 61.36456 * 5 4 2 7 7 H 1.09000 * 109.49629 * 178.68427 * 6 5 4 8 8 N 1.46500 * 109.49718 * 58.58921 * 6 5 4 9 9 C 1.34772 * 120.00186 * 155.00217 * 8 6 5 10 10 O 1.21284 * 119.99649 * 359.97438 * 9 8 6 11 11 C 1.50695 * 120.00037 * 180.02562 * 9 8 6 12 12 N 1.46506 * 109.47129 * 179.97438 * 11 9 8 13 13 C 1.47312 * 126.68812 * 89.99896 * 12 11 9 14 14 C 1.51586 * 103.59421 * 179.97438 * 13 12 11 15 15 O 1.21228 * 127.16040 * 179.97438 * 14 13 12 16 16 N 1.34770 * 105.67940 * 0.02562 * 14 13 12 17 17 C 1.46505 * 124.17429 * 180.02562 * 16 14 13 18 18 C 1.33793 * 111.65014 * 359.76324 * 16 14 13 19 19 O 1.21532 * 123.77323 * 180.25064 * 18 16 14 20 20 C 1.53195 * 109.31143 * 298.63822 * 6 5 4 21 21 N 1.46922 * 108.77740 * 54.63568 * 20 6 5 22 22 C 1.36936 * 120.63068 * 126.41221 * 21 20 6 23 23 H 1.07993 * 120.00038 * 209.00557 * 22 21 20 24 24 C 1.38812 * 119.99785 * 29.01081 * 22 21 20 25 25 N 1.31617 * 120.00378 * 15.01823 * 24 22 21 26 26 Si 1.86807 * 119.99569 * 195.01873 * 24 22 21 27 27 H 1.48498 * 109.47223 * 60.00170 * 26 24 22 28 28 H 1.48507 * 109.46987 * 179.97438 * 26 24 22 29 29 H 1.48507 * 109.47060 * 299.99503 * 26 24 22 30 30 H 1.09002 * 109.47321 * 180.35585 * 1 2 3 31 31 H 1.09005 * 109.46837 * 300.35122 * 1 2 3 32 32 H 1.09001 * 109.47185 * 60.35084 * 1 2 3 33 33 H 1.09003 * 109.49954 * 65.62825 * 4 2 1 34 34 H 1.09000 * 109.49823 * 305.53029 * 4 2 1 35 35 H 1.08997 * 109.45967 * 181.38714 * 5 4 2 36 36 H 1.09003 * 109.45879 * 301.34729 * 5 4 2 37 37 H 0.96998 * 119.99688 * 334.99402 * 8 6 5 38 38 H 1.08996 * 109.47087 * 299.99593 * 11 9 8 39 39 H 1.08997 * 109.47302 * 59.99757 * 11 9 8 40 40 H 1.08998 * 110.60151 * 298.49305 * 13 12 11 41 41 H 1.08999 * 110.60289 * 61.28549 * 13 12 11 42 42 H 1.09003 * 109.46940 * 359.97096 * 17 16 14 43 43 H 1.09005 * 109.47040 * 119.97306 * 17 16 14 44 44 H 1.08992 * 109.46932 * 239.97410 * 17 16 14 45 45 H 1.09005 * 109.58411 * 174.42169 * 20 6 5 46 46 H 1.08999 * 109.58420 * 294.69924 * 20 6 5 47 47 H 0.96999 * 120.00020 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2455 5 6 3.5675 -0.8479 -1.1703 6 6 3.9569 -1.6657 0.0632 7 1 5.0412 -1.7696 0.1034 8 7 3.3405 -2.9924 -0.0151 9 6 3.8970 -4.0335 0.6351 10 8 4.9084 -3.8721 1.2848 11 6 3.2633 -5.3983 0.5541 12 7 4.0522 -6.3505 1.3398 13 6 3.8738 -6.6763 2.7653 14 6 4.9526 -7.7070 3.0330 15 8 5.1873 -8.2655 4.0830 16 7 5.5972 -7.8724 1.8610 17 6 6.7236 -8.7880 1.6635 18 6 5.0777 -7.1013 0.8989 19 8 5.4882 -7.0797 -0.2448 20 6 3.4650 -0.9470 1.3235 21 7 2.0225 -0.6996 1.1944 22 6 1.1538 -1.1129 2.1688 23 1 0.1360 -1.3673 1.9124 24 6 1.5813 -1.2047 3.4863 25 7 2.7046 -0.6266 3.8555 26 14 0.5623 -2.1489 4.7352 27 1 0.4326 -3.5629 4.3007 28 1 1.2314 -2.0980 6.0600 29 1 -0.7868 -1.5366 4.8377 30 1 -0.3634 -1.0277 0.0064 31 1 -0.3633 0.5193 0.8869 32 1 -0.3633 0.5084 -0.8931 33 1 1.7660 -0.1667 -2.1369 34 1 1.6029 -1.7252 -1.2915 35 1 3.9377 -1.3447 -2.0671 36 1 4.0061 0.1474 -1.0994 37 1 2.5318 -3.1215 -0.5349 38 1 2.2490 -5.3521 0.9505 39 1 3.2325 -5.7234 -0.4858 40 1 4.0272 -5.7915 3.3830 41 1 2.8844 -7.0985 2.9413 42 1 6.9457 -9.2984 2.6007 43 1 6.4648 -9.5235 0.9017 44 1 7.5984 -8.2235 1.3411 45 1 3.6518 -1.5719 2.1969 46 1 3.9922 0.0007 1.4329 47 1 3.0035 -0.6911 4.7761 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071989469.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:20 Heat of formation + Delta-G solvation = -41.448935 kcal Electronic energy + Delta-G solvation = -31238.767331 eV Core-core repulsion = 27037.778847 eV Total energy + Delta-G solvation = -4200.988484 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.34369 -39.56641 -38.64784 -37.63691 -36.13201 -35.19668 -34.12872 -32.78822 -31.24405 -30.06460 -29.77325 -27.22154 -26.83883 -25.94748 -24.94011 -22.70037 -22.20706 -21.23005 -20.46192 -20.03709 -18.78637 -17.73956 -17.55438 -16.73653 -16.68970 -16.27412 -15.72756 -15.59606 -15.10724 -14.78296 -14.37339 -14.27421 -14.18436 -14.03939 -13.91827 -13.74812 -13.35712 -13.11333 -12.90315 -12.78992 -12.77310 -12.54566 -12.20773 -11.79031 -11.26874 -11.20669 -11.00810 -10.97480 -10.92508 -10.75792 -10.43724 -10.38223 -10.32957 -10.01100 -9.93845 -9.88156 -9.56132 -9.49297 -8.84971 -8.49712 -8.41650 -6.64752 -5.79230 -3.23870 1.54696 1.93569 2.79077 2.93618 3.05904 3.31247 3.37591 3.41137 3.73960 3.97448 4.44347 4.57699 4.92499 4.99684 5.10562 5.13762 5.20831 5.25732 5.27423 5.32153 5.37618 5.42290 5.44632 5.47469 5.56495 5.71945 5.98015 6.08033 6.11951 6.23753 6.30201 6.31221 6.41303 6.49537 6.57232 6.65598 6.85928 7.00524 7.00721 7.08331 7.23787 7.35038 7.65655 7.78125 7.96017 8.05794 8.44422 8.70474 9.18967 9.83487 10.40168 11.28452 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012248 B = 0.004107 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.563474 B = 6815.569748 C = 8353.783141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.129 4.129 5 C -0.119 4.119 6 C 0.120 3.880 7 H 0.074 0.926 8 N -0.696 5.696 9 C 0.494 3.506 10 O -0.537 6.537 11 C 0.133 3.867 12 N -0.604 5.604 13 C 0.063 3.937 14 C 0.528 3.472 15 O -0.476 6.476 16 N -0.580 5.580 17 C 0.090 3.910 18 C 0.707 3.293 19 O -0.543 6.543 20 C 0.163 3.837 21 N -0.583 5.583 22 C -0.252 4.252 23 H 0.068 0.932 24 C 0.006 3.994 25 N -0.899 5.899 26 Si 0.896 3.104 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.284 1.284 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.037 0.963 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.070 0.930 37 H 0.395 0.605 38 H 0.120 0.880 39 H 0.115 0.885 40 H 0.130 0.870 41 H 0.125 0.875 42 H 0.092 0.908 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.097 0.903 46 H 0.024 0.976 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.344 -10.747 -8.761 13.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.169 4.169 5 C -0.157 4.157 6 C 0.014 3.986 7 H 0.092 0.908 8 N -0.348 5.348 9 C 0.277 3.723 10 O -0.414 6.414 11 C 0.007 3.993 12 N -0.341 5.341 13 C -0.063 4.063 14 C 0.316 3.684 15 O -0.346 6.346 16 N -0.326 5.326 17 C -0.051 4.051 18 C 0.409 3.591 19 O -0.417 6.417 20 C 0.036 3.964 21 N -0.306 5.306 22 C -0.381 4.381 23 H 0.086 0.914 24 C -0.193 4.193 25 N -0.543 5.543 26 Si 0.726 3.274 27 H -0.212 1.212 28 H -0.217 1.217 29 H -0.210 1.210 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.230 0.770 38 H 0.138 0.862 39 H 0.133 0.867 40 H 0.148 0.852 41 H 0.143 0.857 42 H 0.111 0.889 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.115 0.885 46 H 0.042 0.958 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.491 -10.856 -8.235 13.707 hybrid contribution -0.841 -0.331 0.576 1.072 sum 0.650 -11.187 -7.659 13.573 Atomic orbital electron populations 1.21791 0.96105 1.01225 1.00146 1.20468 0.92865 0.93654 0.87228 0.95839 1.22060 0.95116 1.00651 0.99054 1.21691 0.97013 1.00153 0.96838 1.21776 0.96923 0.81673 0.98236 0.90776 1.45775 1.29310 1.08576 1.51098 1.20777 0.85210 0.86347 0.79978 1.90702 1.24985 1.84857 1.40854 1.21189 0.94569 0.85978 0.97524 1.46923 1.34608 1.42019 1.10528 1.22570 1.00057 0.99835 0.83842 1.20875 0.82621 0.81982 0.82928 1.90801 1.67735 1.49906 1.26165 1.46222 1.33412 1.41026 1.11947 1.21787 0.87039 0.92538 1.03702 1.15717 0.80090 0.78923 0.84358 1.90957 1.64267 1.69609 1.16870 1.21167 0.83686 0.97069 0.94453 1.44048 1.02692 1.64824 1.19053 1.19047 0.94629 1.38272 0.86180 0.91429 1.25066 0.97640 0.99701 0.96926 1.69973 1.23120 1.44198 1.16975 0.86483 0.79709 0.80066 0.81101 1.21190 1.21697 1.20994 0.92922 0.92117 0.94439 0.92885 0.92632 0.92990 0.91176 0.76984 0.86242 0.86672 0.85234 0.85697 0.88913 0.90497 0.90410 0.88513 0.95834 0.93582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 7.94 37.16 0.30 -1.99 16 2 C 0.16 3.05 3.50 -67.60 -0.24 2.81 16 3 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 4 C -0.13 -1.91 5.21 -26.61 -0.14 -2.05 16 5 C -0.12 -1.78 5.59 -26.69 -0.15 -1.93 16 6 C 0.12 2.16 2.81 -67.81 -0.19 1.97 16 7 H 0.07 1.43 7.58 -51.93 -0.39 1.04 16 8 N -0.70 -11.21 4.92 -53.69 -0.26 -11.48 16 9 C 0.49 8.38 7.87 -10.99 -0.09 8.29 16 10 O -0.54 -11.44 16.09 5.55 0.09 -11.35 16 11 C 0.13 1.65 6.63 -5.19 -0.03 1.61 16 12 N -0.60 -8.09 2.51 -181.40 -0.45 -8.55 16 13 C 0.06 0.74 7.66 -4.31 -0.03 0.71 16 14 C 0.53 6.83 8.32 -10.55 -0.09 6.74 16 15 O -0.48 -7.09 17.51 5.60 0.10 -6.99 16 16 N -0.58 -7.43 3.01 -128.16 -0.39 -7.82 16 17 C 0.09 0.87 10.76 59.85 0.64 1.52 16 18 C 0.71 10.47 8.31 -88.02 -0.73 9.73 16 19 O -0.54 -9.46 17.34 5.34 0.09 -9.37 16 20 C 0.16 3.69 4.89 -3.71 -0.02 3.67 16 21 N -0.58 -13.01 2.91 -164.78 -0.48 -13.49 16 22 C -0.25 -6.21 8.61 -15.06 -0.13 -6.34 16 23 H 0.07 1.62 6.20 -52.49 -0.33 1.30 16 24 C 0.01 0.15 4.96 -17.43 -0.09 0.07 16 25 N -0.90 -25.34 11.14 55.49 0.62 -24.73 16 26 Si 0.90 20.63 29.58 -169.99 -5.03 15.60 16 27 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 30 H 0.05 0.88 7.40 -51.93 -0.38 0.49 16 31 H 0.06 1.14 7.66 -51.93 -0.40 0.75 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.78 6.40 -51.93 -0.33 0.45 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.40 5.42 6.77 -40.82 -0.28 5.14 16 38 H 0.12 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.12 1.21 8.02 -51.93 -0.42 0.79 16 40 H 0.13 1.68 8.14 -51.93 -0.42 1.26 16 41 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.09 0.78 7.64 -51.93 -0.40 0.39 16 43 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.10 2.59 6.06 -51.93 -0.31 2.27 16 46 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 380.97 15.07 5.74 5.74 Total: -1.00 -34.14 380.97 -7.98 -42.12 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -7.02 Total: 5.50 kcal Atomic # 6 Polarization: 25.80 SS G_CDS: -0.98 Total: 24.82 kcal Atomic # 7 Polarization: -65.10 SS G_CDS: -0.96 Total: -66.06 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: 0.28 Total: -27.71 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.14 -7.98 -42.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071989469.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.668 kcal (2) G-P(sol) polarization free energy of solvation -34.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds