Wall clock time and date at job start Tue Mar 31 2020 21:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.58295 * 2 1 4 4 C 1.53188 * 109.58581 * 120.28323 * 2 1 3 5 5 C 1.53041 * 109.31364 * 174.42095 * 4 2 1 6 6 C 1.53037 * 109.52486 * 298.64140 * 5 4 2 7 7 H 1.09000 * 109.49519 * 181.30931 * 6 5 4 8 8 N 1.46493 * 109.49904 * 301.40525 * 6 5 4 9 9 C 1.34784 * 120.00076 * 204.99862 * 8 6 5 10 10 O 1.21284 * 119.99814 * 0.02562 * 9 8 6 11 11 C 1.50699 * 120.00049 * 179.97438 * 9 8 6 12 12 N 1.46498 * 109.47090 * 180.02562 * 11 9 8 13 13 C 1.47311 * 126.68855 * 90.00122 * 12 11 9 14 14 C 1.51583 * 103.59433 * 179.97438 * 13 12 11 15 15 O 1.21236 * 127.16414 * 180.02562 * 14 13 12 16 16 N 1.34771 * 105.68237 * 0.02562 * 14 13 12 17 17 C 1.46500 * 124.17797 * 180.02562 * 16 14 13 18 18 C 1.33791 * 111.64573 * 359.75911 * 16 14 13 19 19 O 1.21537 * 123.77708 * 180.24754 * 18 16 14 20 20 C 1.53169 * 109.32793 * 61.37282 * 6 5 4 21 21 N 1.46923 * 109.58498 * 239.57268 * 2 1 3 22 22 C 1.36937 * 120.63132 * 6.57860 * 21 2 1 23 23 H 1.08001 * 120.00565 * 330.17498 * 22 21 2 24 24 C 1.38814 * 119.99887 * 150.16356 * 22 21 2 25 25 N 1.31627 * 119.99987 * 344.51489 * 24 22 21 26 26 Si 1.86799 * 119.99883 * 164.50881 * 24 22 21 27 27 H 1.48489 * 109.47406 * 0.02562 * 26 24 22 28 28 H 1.48509 * 109.46874 * 120.00550 * 26 24 22 29 29 H 1.48499 * 109.47144 * 240.00045 * 26 24 22 30 30 H 1.09001 * 109.47160 * 299.72007 * 1 2 3 31 31 H 1.09003 * 109.47197 * 59.71306 * 1 2 3 32 32 H 1.08999 * 109.47242 * 179.71882 * 1 2 3 33 33 H 1.09007 * 109.49830 * 54.46825 * 4 2 1 34 34 H 1.09007 * 109.52409 * 294.38831 * 4 2 1 35 35 H 1.08997 * 109.45854 * 58.65500 * 5 4 2 36 36 H 1.09001 * 109.46071 * 178.62626 * 5 4 2 37 37 H 0.97000 * 119.99965 * 25.00106 * 8 6 5 38 38 H 1.09003 * 109.47520 * 300.00600 * 11 9 8 39 39 H 1.08999 * 109.47062 * 59.99835 * 11 9 8 40 40 H 1.09000 * 110.60252 * 298.49139 * 13 12 11 41 41 H 1.09005 * 110.60157 * 61.43992 * 13 12 11 42 42 H 1.09000 * 109.47064 * 359.97320 * 17 16 14 43 43 H 1.09004 * 109.47399 * 119.96902 * 17 16 14 44 44 H 1.08999 * 109.47349 * 239.97109 * 17 16 14 45 45 H 1.09001 * 109.58739 * 185.56876 * 20 6 5 46 46 H 1.09002 * 109.70624 * 65.20944 * 20 6 5 47 47 H 0.96996 * 119.99377 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7278 1.2463 5 6 3.5675 -0.8465 1.1712 6 6 3.9566 -1.6657 -0.0615 7 1 5.0408 -1.7697 -0.1018 8 7 3.3402 -2.9923 0.0184 9 6 3.8965 -4.0342 -0.6309 10 8 4.9077 -3.8735 -1.2810 11 6 3.2628 -5.3989 -0.5482 12 7 4.0514 -6.3519 -1.3330 13 6 5.1778 -7.1697 -0.8508 14 6 5.5996 -7.9539 -2.0776 15 8 6.4981 -8.7640 -2.1559 16 7 4.7679 -7.5631 -3.0635 17 6 4.8199 -8.0747 -4.4352 18 6 3.8851 -6.6544 -2.6332 19 8 3.0303 -6.1558 -3.3388 20 6 3.4650 -0.9486 -1.3226 21 7 2.0225 -0.7010 -1.1936 22 6 1.1536 -1.1163 -2.1671 23 1 0.1397 -1.3833 -1.9079 24 6 1.5758 -1.1938 -3.4872 25 7 2.6864 -0.5932 -3.8593 26 14 0.5679 -2.1505 -4.7355 27 1 -0.6273 -2.7271 -4.0693 28 1 0.1352 -1.2391 -5.8253 29 1 1.3944 -3.2451 -5.3046 30 1 -0.3633 0.5095 0.8925 31 1 -0.3634 0.5183 -0.8874 32 1 -0.3634 -1.0276 -0.0050 33 1 1.6029 -1.7237 1.2935 34 1 1.7660 -0.1646 2.1374 35 1 4.0061 0.1487 1.0991 36 1 3.9378 -1.3424 2.0685 37 1 2.5316 -3.1208 0.5387 38 1 3.2321 -5.7229 0.4922 39 1 2.2484 -5.3530 -0.9443 40 1 5.9923 -6.5341 -0.5035 41 1 4.8512 -7.8434 -0.0586 42 1 5.6245 -8.8051 -4.5203 43 1 3.8704 -8.5497 -4.6822 44 1 5.0035 -7.2500 -5.1239 45 1 3.6518 -1.5746 -2.1952 46 1 3.9901 0.0000 -1.4342 47 1 2.9816 -0.6478 -4.7816 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071989472.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:29 Heat of formation + Delta-G solvation = -39.649048 kcal Electronic energy + Delta-G solvation = -31395.917026 eV Core-core repulsion = 27195.006591 eV Total energy + Delta-G solvation = -4200.910435 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.30602 -39.56175 -38.61421 -37.61034 -36.07590 -35.15979 -34.10247 -32.71730 -31.22681 -30.02380 -29.73748 -27.22152 -26.80332 -25.90063 -24.88191 -22.66380 -22.17177 -21.21768 -20.42216 -20.03107 -18.75632 -17.72190 -17.51475 -16.73329 -16.66917 -16.21221 -15.67406 -15.55556 -15.14288 -14.64687 -14.36107 -14.24983 -14.13605 -14.06821 -13.88463 -13.69687 -13.32692 -13.06290 -12.89886 -12.79311 -12.69376 -12.49458 -12.16433 -11.76698 -11.23584 -11.15680 -10.94846 -10.92104 -10.87007 -10.64111 -10.36348 -10.28274 -10.27348 -9.93850 -9.87713 -9.84163 -9.51507 -9.44091 -8.83872 -8.40780 -8.39060 -6.56307 -5.70594 -3.15582 1.55050 1.96140 2.80720 3.00677 3.07149 3.46920 3.53928 3.60583 3.74462 3.93483 4.56633 4.57570 4.82861 4.97976 5.06105 5.11986 5.23202 5.26504 5.31271 5.36357 5.43236 5.45414 5.51067 5.53065 5.60588 5.77781 5.99092 6.09425 6.13733 6.26800 6.31334 6.34902 6.43077 6.50069 6.59260 6.67201 6.87813 7.05498 7.06523 7.11716 7.24420 7.38108 7.70724 7.88718 8.00433 8.12118 8.53372 8.70274 9.28000 9.92673 10.48030 11.37324 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012350 B = 0.004308 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.714000 B = 6497.519031 C = 8000.056158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.023 0.977 4 C -0.130 4.130 5 C -0.118 4.118 6 C 0.120 3.880 7 H 0.074 0.926 8 N -0.697 5.697 9 C 0.492 3.508 10 O -0.537 6.537 11 C 0.134 3.866 12 N -0.608 5.608 13 C 0.067 3.933 14 C 0.527 3.473 15 O -0.481 6.481 16 N -0.578 5.578 17 C 0.089 3.911 18 C 0.701 3.299 19 O -0.523 6.523 20 C 0.162 3.838 21 N -0.582 5.582 22 C -0.254 4.254 23 H 0.068 0.932 24 C 0.011 3.989 25 N -0.898 5.898 26 Si 0.893 3.107 27 H -0.279 1.279 28 H -0.293 1.293 29 H -0.285 1.285 30 H 0.036 0.964 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.395 0.605 38 H 0.113 0.887 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.092 0.908 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.095 0.905 46 H 0.024 0.976 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.313 -11.616 11.670 16.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.041 0.959 4 C -0.169 4.169 5 C -0.156 4.156 6 C 0.014 3.986 7 H 0.092 0.908 8 N -0.348 5.348 9 C 0.276 3.724 10 O -0.414 6.414 11 C 0.008 3.992 12 N -0.346 5.346 13 C -0.059 4.059 14 C 0.315 3.685 15 O -0.352 6.352 16 N -0.324 5.324 17 C -0.052 4.052 18 C 0.403 3.597 19 O -0.395 6.395 20 C 0.036 3.964 21 N -0.305 5.305 22 C -0.383 4.383 23 H 0.085 0.915 24 C -0.189 4.189 25 N -0.542 5.542 26 Si 0.723 3.277 27 H -0.204 1.204 28 H -0.220 1.220 29 H -0.211 1.211 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.230 0.770 38 H 0.131 0.869 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.111 0.889 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.113 0.887 46 H 0.042 0.958 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.038 -11.575 10.565 15.964 hybrid contribution -0.794 -0.357 -0.590 1.052 sum 2.244 -11.932 9.975 15.713 Atomic orbital electron populations 1.21790 0.96124 1.01238 1.00103 1.20455 0.92894 0.93596 0.87244 0.95911 1.22067 0.95082 1.00665 0.99104 1.21683 0.97060 1.00137 0.96685 1.21758 0.96814 0.81733 0.98282 0.90787 1.45790 1.29306 1.08552 1.51139 1.20817 0.85245 0.86518 0.79835 1.90700 1.25390 1.85005 1.40292 1.21165 0.95632 0.85894 0.96460 1.46907 1.34980 1.42991 1.09751 1.22479 0.91819 0.94957 0.96664 1.20851 0.80632 0.81213 0.85826 1.90794 1.28457 1.32381 1.83547 1.46225 1.32355 1.40525 1.13337 1.21809 1.03913 1.00567 0.78894 1.15799 0.81809 0.79426 0.82683 1.91077 1.35472 1.55030 1.57875 1.21147 0.83864 0.97010 0.94419 1.44036 1.02634 1.64662 1.19206 1.19068 0.95027 1.38218 0.85994 0.91454 1.25050 0.97664 0.99106 0.97040 1.69997 1.24000 1.43535 1.16642 0.86374 0.79724 0.79826 0.81730 1.20376 1.21992 1.21099 0.94504 0.92087 0.92932 0.92659 0.92912 0.91181 0.93069 0.76989 0.86897 0.86127 0.85803 0.86031 0.88929 0.90411 0.90244 0.88728 0.95818 0.93784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 7.95 37.16 0.30 -2.09 16 2 C 0.16 3.15 3.50 -67.60 -0.24 2.92 16 3 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 4 C -0.13 -1.93 5.20 -26.61 -0.14 -2.07 16 5 C -0.12 -1.73 5.59 -26.69 -0.15 -1.88 16 6 C 0.12 2.16 2.81 -67.83 -0.19 1.97 16 7 H 0.07 1.39 7.58 -51.93 -0.39 0.99 16 8 N -0.70 -11.17 4.91 -53.70 -0.26 -11.43 16 9 C 0.49 8.31 7.87 -10.98 -0.09 8.22 16 10 O -0.54 -11.41 16.09 5.55 0.09 -11.32 16 11 C 0.13 1.64 6.63 -5.20 -0.03 1.61 16 12 N -0.61 -8.07 2.51 -181.40 -0.45 -8.53 16 13 C 0.07 0.65 7.66 -4.32 -0.03 0.61 16 14 C 0.53 6.46 8.32 -10.55 -0.09 6.37 16 15 O -0.48 -6.71 17.51 5.60 0.10 -6.61 16 16 N -0.58 -7.90 3.00 -128.16 -0.39 -8.29 16 17 C 0.09 1.00 10.76 59.85 0.64 1.64 16 18 C 0.70 11.53 8.31 -88.02 -0.73 10.80 16 19 O -0.52 -11.06 17.34 5.33 0.09 -10.96 16 20 C 0.16 3.82 4.88 -3.72 -0.02 3.80 16 21 N -0.58 -13.62 2.90 -164.79 -0.48 -14.10 16 22 C -0.25 -6.69 8.58 -15.06 -0.13 -6.82 16 23 H 0.07 1.74 6.23 -52.49 -0.33 1.41 16 24 C 0.01 0.31 4.94 -17.43 -0.09 0.22 16 25 N -0.90 -26.95 11.23 55.49 0.62 -26.32 16 26 Si 0.89 23.01 29.58 -169.99 -5.03 17.98 16 27 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 29 H -0.28 -7.76 7.11 56.52 0.40 -7.36 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 1.20 7.67 -51.93 -0.40 0.80 16 32 H 0.05 0.93 7.40 -51.93 -0.38 0.54 16 33 H 0.05 0.78 6.40 -51.93 -0.33 0.45 16 34 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.40 5.39 6.77 -40.82 -0.28 5.12 16 38 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.12 1.56 8.03 -51.93 -0.42 1.14 16 40 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 0.86 7.64 -51.93 -0.40 0.47 16 43 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.09 2.69 6.15 -51.93 -0.32 2.37 16 46 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 381.13 15.07 5.74 5.74 Total: -1.00 -37.45 381.13 -7.98 -45.43 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -7.03 Total: 3.10 kcal Atomic # 6 Polarization: 26.29 SS G_CDS: -0.98 Total: 25.31 kcal Atomic # 7 Polarization: -67.72 SS G_CDS: -0.96 Total: -68.67 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: 0.28 Total: -28.89 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.03 Total: 17.98 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.45 -7.98 -45.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071989472.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.778 kcal (2) G-P(sol) polarization free energy of solvation -37.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds