Wall clock time and date at job start Tue Mar 31 2020 22:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 110.64086 * 2 1 4 4 C 1.54320 * 110.87471 * 236.75355 * 2 1 3 5 5 N 1.47024 * 107.27517 * 219.37700 * 4 2 1 6 6 C 1.36936 * 125.65462 * 178.98548 * 5 4 2 7 7 H 1.08004 * 119.99839 * 349.94417 * 6 5 4 8 8 C 1.38811 * 120.00263 * 169.93586 * 6 5 4 9 9 N 1.31616 * 120.00146 * 350.42582 * 8 6 5 10 10 Si 1.86796 * 119.99857 * 170.42080 * 8 6 5 11 11 H 1.48502 * 109.47412 * 94.14480 * 10 8 6 12 12 H 1.48504 * 109.46831 * 214.14541 * 10 8 6 13 13 H 1.48496 * 109.47172 * 334.14358 * 10 8 6 14 14 C 1.47428 * 108.69703 * 358.93706 * 5 4 2 15 15 C 1.54901 * 104.83648 * 24.13249 * 14 5 4 16 16 H 1.08997 * 111.03809 * 81.07581 * 15 14 5 17 17 N 1.46500 * 111.00702 * 204.91535 * 15 14 5 18 18 C 1.34768 * 120.00029 * 267.19488 * 17 15 14 19 19 O 1.21284 * 120.00318 * 0.02562 * 18 17 15 20 20 C 1.50702 * 120.00228 * 179.97438 * 18 17 15 21 21 N 1.46505 * 109.47301 * 180.02562 * 20 18 17 22 22 C 1.33783 * 124.17627 * 90.02443 * 21 20 18 23 23 O 1.21545 * 123.77368 * 359.96702 * 22 21 20 24 24 N 1.34522 * 112.45972 * 179.97438 * 22 21 20 25 25 C 1.47314 * 106.61658 * 0.02562 * 24 22 21 26 26 C 1.52998 * 110.59820 * 118.52592 * 25 24 22 27 27 C 1.53001 * 110.59863 * 241.31697 * 25 24 22 28 28 C 1.34767 * 124.17437 * 269.72386 * 21 20 18 29 29 O 1.21229 * 127.16208 * 0.02562 * 28 21 20 30 30 H 1.08994 * 109.47209 * 296.85595 * 1 2 3 31 31 H 1.08999 * 109.46517 * 56.85952 * 1 2 3 32 32 H 1.08998 * 109.46780 * 176.85077 * 1 2 3 33 33 H 1.09007 * 109.88342 * 338.79074 * 4 2 1 34 34 H 1.08993 * 109.88822 * 99.95555 * 4 2 1 35 35 H 0.96996 * 120.00476 * 179.97438 * 9 8 6 36 36 H 1.09004 * 110.36905 * 265.29134 * 14 5 4 37 37 H 1.09002 * 110.36312 * 142.97346 * 14 5 4 38 38 H 0.96997 * 119.99756 * 87.19358 * 17 15 14 39 39 H 1.09004 * 109.47159 * 60.00137 * 20 18 17 40 40 H 1.08995 * 109.47434 * 300.00382 * 20 18 17 41 41 H 0.97002 * 126.69622 * 180.02562 * 24 22 21 42 42 H 1.09005 * 109.47283 * 61.45481 * 26 25 24 43 43 H 1.09003 * 109.47155 * 181.45443 * 26 25 24 44 44 H 1.08991 * 109.47209 * 301.45367 * 26 25 24 45 45 H 1.08998 * 109.47099 * 58.54827 * 27 25 24 46 46 H 1.09004 * 109.47104 * 178.54556 * 27 25 24 47 47 H 1.08996 * 109.47460 * 298.54391 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0799 -0.7905 -1.2059 5 7 3.2495 -1.5471 -0.7354 6 6 4.0127 -2.3917 -1.4964 7 1 3.6830 -2.6738 -2.4855 8 6 5.2100 -2.8853 -0.9968 9 7 5.7060 -2.4006 0.1218 10 14 6.1173 -4.2375 -1.9121 11 1 7.1311 -3.6317 -2.8124 12 1 6.7924 -5.1294 -0.9354 13 1 5.1496 -5.0263 -2.7162 14 6 3.4652 -1.2447 0.6914 15 6 2.0790 -0.7935 1.2151 16 1 1.4466 -1.6526 1.4387 17 7 2.2175 0.0726 2.3886 18 6 2.1826 -0.4591 3.6264 19 8 2.0370 -1.6547 3.7690 20 6 2.3256 0.4317 4.8336 21 7 2.2556 -0.3804 6.0509 22 6 3.3176 -0.9341 6.6470 23 8 4.4569 -0.8212 6.2387 24 7 2.9838 -1.6300 7.7488 25 6 1.5218 -1.5181 7.8908 26 6 0.8658 -2.8979 7.8087 27 6 1.1601 -0.8294 9.2083 28 6 1.1141 -0.6571 6.7117 29 8 -0.0060 -0.2952 6.4219 30 1 -0.3633 0.4642 0.9168 31 1 -0.3632 0.5618 -0.8605 32 1 -0.3633 -1.0261 -0.0565 33 1 1.3191 -1.4773 -1.5771 34 1 2.3776 -0.1016 -1.9963 35 1 6.5425 -2.7457 0.4712 36 1 4.1929 -0.4409 0.8030 37 1 3.7992 -2.1364 1.2218 38 1 2.3343 1.0288 2.2745 39 1 1.5208 1.1668 4.8400 40 1 3.2863 0.9451 4.7945 41 1 3.5879 -2.1116 8.3354 42 1 1.2315 -3.5231 8.6234 43 1 -0.2159 -2.7913 7.8899 44 1 1.1145 -3.3622 6.8546 45 1 1.6157 0.1603 9.2380 46 1 0.0769 -0.7331 9.2826 47 1 1.5299 -1.4248 10.0430 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080890222.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:14 Heat of formation + Delta-G solvation = -47.921284 kcal Electronic energy + Delta-G solvation = -30624.350868 eV Core-core repulsion = 26423.081721 eV Total energy + Delta-G solvation = -4201.269146 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.71851 -39.53840 -38.74194 -37.61121 -36.71048 -35.27241 -33.94178 -32.66313 -31.73144 -30.37132 -29.35616 -27.92465 -27.31485 -25.63090 -24.42613 -23.61481 -22.32851 -21.05066 -20.38347 -20.13999 -19.52596 -18.13941 -17.56891 -16.89006 -16.58590 -16.16151 -16.01700 -15.89572 -15.34795 -14.95438 -14.67721 -14.63439 -14.28393 -13.99822 -13.77784 -13.47089 -13.04465 -13.02005 -12.90002 -12.68457 -12.64301 -12.58605 -12.45271 -12.09682 -11.97307 -11.63826 -11.32580 -10.99786 -10.92025 -10.77461 -10.66033 -10.47288 -10.38493 -10.29562 -9.94854 -9.88048 -9.73466 -9.71573 -9.37789 -8.58345 -8.48234 -6.77396 -5.69148 -3.03498 1.47232 1.91897 2.78229 2.86439 2.90791 3.43007 3.47289 3.49509 3.51996 3.67728 4.17465 4.38924 4.53603 4.73174 4.79488 5.00368 5.05519 5.11133 5.12341 5.17966 5.27072 5.29903 5.31373 5.44252 5.51709 5.54407 5.56203 5.75624 5.76417 5.95629 6.03116 6.15476 6.21607 6.38527 6.46327 6.60755 6.69075 6.75928 6.87377 6.94831 7.17975 7.44986 7.62192 7.78670 7.84894 8.01183 8.29423 8.45645 9.22386 9.85048 10.50933 11.43089 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013816 B = 0.003179 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.089269 B = 8804.859978 C =10065.995277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 H 0.075 0.925 4 C 0.141 3.859 5 N -0.602 5.602 6 C -0.234 4.234 7 H 0.077 0.923 8 C -0.005 4.005 9 N -0.913 5.913 10 Si 0.910 3.090 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.280 1.280 14 C 0.171 3.829 15 C 0.118 3.882 16 H 0.092 0.908 17 N -0.707 5.707 18 C 0.500 3.500 19 O -0.528 6.528 20 C 0.098 3.902 21 N -0.559 5.559 22 C 0.707 3.293 23 O -0.531 6.531 24 N -0.721 5.721 25 C 0.120 3.880 26 C -0.148 4.148 27 C -0.145 4.145 28 C 0.536 3.464 29 O -0.465 6.465 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.027 0.973 34 H 0.024 0.976 35 H 0.254 0.746 36 H 0.029 0.971 37 H 0.072 0.928 38 H 0.397 0.603 39 H 0.123 0.877 40 H 0.128 0.872 41 H 0.439 0.561 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.084 0.916 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.611 7.645 18.711 23.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.129 4.129 3 H 0.093 0.907 4 C 0.015 3.985 5 N -0.328 5.328 6 C -0.362 4.362 7 H 0.095 0.905 8 C -0.202 4.202 9 N -0.560 5.560 10 Si 0.741 3.259 11 H -0.216 1.216 12 H -0.216 1.216 13 H -0.206 1.206 14 C 0.044 3.956 15 C 0.013 3.987 16 H 0.110 0.890 17 N -0.357 5.357 18 C 0.284 3.716 19 O -0.403 6.403 20 C -0.027 4.027 21 N -0.304 5.304 22 C 0.408 3.592 23 O -0.403 6.403 24 N -0.386 5.386 25 C 0.030 3.970 26 C -0.206 4.206 27 C -0.204 4.204 28 C 0.323 3.677 29 O -0.333 6.333 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.045 0.955 34 H 0.042 0.958 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.091 0.909 38 H 0.231 0.769 39 H 0.141 0.859 40 H 0.145 0.855 41 H 0.283 0.717 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.103 0.897 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.524 6.972 18.343 22.757 hybrid contribution 1.017 -0.401 -0.389 1.160 sum -10.508 6.571 17.954 21.816 Atomic orbital electron populations 1.21737 0.94900 1.01891 1.00939 1.22417 0.95233 0.99249 0.96043 0.90653 1.21345 0.90363 0.93116 0.93681 1.44354 1.31069 1.50938 1.06479 1.18987 0.99593 1.19221 0.98392 0.90514 1.24851 0.96926 1.00471 0.97995 1.69946 1.20643 1.43497 1.21881 0.86136 0.79579 0.81682 0.78539 1.21606 1.21595 1.20565 1.21668 0.89377 0.99932 0.84589 1.22699 1.01014 0.92548 0.82416 0.88970 1.45740 1.73516 1.11111 1.05376 1.20537 0.77206 0.89240 0.84643 1.90735 1.48421 1.15224 1.85963 1.21501 1.06992 0.92890 0.81328 1.45807 1.09331 1.49524 1.25744 1.15775 0.84212 0.78650 0.80580 1.91070 1.18500 1.63418 1.67320 1.45610 1.07847 1.56116 1.29056 1.21444 0.81957 0.97848 0.95775 1.22007 1.01618 0.92697 1.04315 1.22000 1.03559 1.00925 0.93875 1.20761 0.84162 0.79057 0.83722 1.90780 1.20269 1.52323 1.69970 0.93071 0.92793 0.92528 0.95501 0.95765 0.93619 0.95305 0.90937 0.76922 0.85923 0.85452 0.71657 0.90255 0.89849 0.90747 0.91431 0.89745 0.90208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.17 37.16 0.34 -1.54 16 2 C -0.11 -1.84 3.19 -88.78 -0.28 -2.13 16 3 H 0.08 1.14 8.00 -51.93 -0.42 0.73 16 4 C 0.14 2.95 6.84 -3.07 -0.02 2.93 16 5 N -0.60 -15.83 3.39 -170.07 -0.58 -16.40 16 6 C -0.23 -6.72 10.24 -15.06 -0.15 -6.87 16 7 H 0.08 2.12 7.85 -52.48 -0.41 1.71 16 8 C -0.01 -0.15 5.40 -17.43 -0.09 -0.25 16 9 N -0.91 -28.06 10.68 55.49 0.59 -27.47 16 10 Si 0.91 22.84 29.56 -169.99 -5.03 17.81 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 14 C 0.17 4.31 5.11 -2.53 -0.01 4.29 16 15 C 0.12 2.30 2.87 -65.78 -0.19 2.12 16 16 H 0.09 1.99 7.45 -51.93 -0.39 1.61 16 17 N -0.71 -11.14 5.20 -51.73 -0.27 -11.41 16 18 C 0.50 8.47 7.90 -10.99 -0.09 8.38 16 19 O -0.53 -11.36 16.07 5.55 0.09 -11.28 16 20 C 0.10 1.22 6.18 -5.19 -0.03 1.19 16 21 N -0.56 -7.46 2.09 -122.02 -0.26 -7.71 16 22 C 0.71 10.00 8.62 -88.03 -0.76 9.24 16 23 O -0.53 -9.62 17.48 5.33 0.09 -9.52 16 24 N -0.72 -6.96 5.90 -52.94 -0.31 -7.27 16 25 C 0.12 1.04 1.37 -132.09 -0.18 0.86 16 26 C -0.15 -1.15 8.99 37.16 0.33 -0.81 16 27 C -0.15 -0.79 8.98 37.16 0.33 -0.46 16 28 C 0.54 6.56 6.99 -10.56 -0.07 6.49 16 29 O -0.46 -6.50 17.75 5.60 0.10 -6.40 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.82 8.07 -51.93 -0.42 0.40 16 33 H 0.03 0.55 7.78 -51.93 -0.40 0.15 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 36 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 37 H 0.07 2.16 6.94 -51.93 -0.36 1.80 16 38 H 0.40 4.74 8.57 -40.82 -0.35 4.39 16 39 H 0.12 1.12 8.00 -51.93 -0.42 0.70 16 40 H 0.13 1.40 7.86 -51.93 -0.41 0.99 16 41 H 0.44 3.09 8.96 -40.82 -0.37 2.72 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 390.44 15.07 5.88 5.88 Total: -1.00 -38.96 390.44 -7.85 -46.82 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -7.30 Total: 3.52 kcal Atomic # 6 Polarization: 24.31 SS G_CDS: -0.88 Total: 23.43 kcal Atomic # 7 Polarization: -69.45 SS G_CDS: -0.82 Total: -70.27 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: 0.28 Total: -27.20 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.03 Total: 17.81 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -38.96 -7.85 -46.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080890222.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.103 kcal (2) G-P(sol) polarization free energy of solvation -38.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds